Lsi04G009820 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G009820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PHD finger protein ALFIN-LIKE 2-like
Location	chr04: 10500418 .. 10503521 (+)
RNA-Seq Expression	Lsi04G009820
Synteny	Lsi04G009820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCCTTAAATTTATATTACCAGATGAAGCCTATTGTAAGCAAAATGAAAGGCTTCCAGCATAACCATCTTGTGAACTGGCACTATGAAAATAAATGAGGTGCCGATTCTTCTTCCACCTACAGAAAGTATGCCCGTTGGAAATGTTTTTTTCCCTCTGATCATTGCTTTTATCAATATCTTGTTGGACATTTGCAACAATAAAATCTTTTCTTGGGACCTTCGATCTCCAAATCAACATAAGAGAAATGTGAATAATATCCAGCCTGCCCACTAGATTTCTCTATCCAGCAAGCTTAAGCACAAACTTCAACACCAAAAAATCCTTGTCTGACACCAACCATGTCGTGACATTTGAAGTCTTCAACAACGTCCCTGTGATGACCATGACTGAATGTAGGCAAGGATTAGTTGGTAAGGTTACTGAAATGAAAAATAAGAAAATATAAAACATCATCATATAGAAACATATCTATGATGTTCATAAAAAAAGGAAAAGGAAACATATCTATGATAATAGTGTTTTGTTGTTCCTCAATACTTCTTTTCCACAATAAAACTCTGCCTAGATGTCCATCAATGTCTTATTCACTTTACCTTTTGTCAAAGGTTCAAAAAACATAAAATTTGCTCTTACTATTGACTTTCTACCTAGTTGCCTCCCTGTTCCTGGGCTACTCCCGGTATTTCCTACACCAACATATTATACAAGAAAGCCTTTCCCTGAAGTTTATATTTATATTAATTATTATTTTTGTCTTAGATGGATAACTACTATTCTGAAAATTTTGATTACTGTTAATTGTAGGAACATTTTTATTTAGTGGATATTAAGTATAGCAATTAGCAGTAGACCAGGACCTTTTCTACAATGTGGGTCTATCCTGATTAAGTTTAATTATCTTTCATTGTTTGGGTTGTCATATTAAACTTCTAGTGAGAATGAAGGGTGAAAAACTATAGTTGACTTGTTGCTTCTCTCAATGTTTTTTTTTTCTATATGTTCCATGCAACACACACACACACACACATATAGAAACCTTTTAGTGACAGATGAAGAAATACCGATGAATACAAAACAACTCTCATTGATTGAATAGAAACAATTTTCCATGCATGATCAAATACAAAACATCTCATTGAATAATGAAATATAGAAAGGGGGAGGTGCCTTTTTTGTTAAATAAATTTAAAAAACAATCCAAGACGAGAGGACAATAATTATGTTTTTAGTATGTTATCATTTATGTTTCAAAAGATTTTCCTTATAAAACCAGATAAATTTTGTAAGCATCCTTTCTAAGAAAAGACGAAGAACGACGTACTAGGGCTAGAACTGCATTTGTGTTCCACTCAGGGTTTAGACAAGGTAGAATTAGCGCATCTCAGCTTGATGCAAATAACACATTGTTTCTAATAGGGAAGGTGAATTTTGACAATAAGAAGTGTGAATCTAGAGAGCACGTTTAGGATGAGAGTAGACGTATAAATAAGAAAGGGAAAATAGGTGGTGTGTGCACGTGGGAGTGACATGGGAGAAAAAGAATGAGGAAGGTAAGAACATAGTCGAGTGTCTTGGGAGAAAAGTAGACCACTTAAACATTTTTTATGGTTTGTGATTGTCCTTTCCTCTGTATTTGAATTTAATATTTAATACAAGAATTCGATCAGTTTGAAACTCTGCTTTGTGTTTATGAGAGAAGGTTCATTTTGTTTAGTTCAAGCATCATTTAAAAGCATAGATTTTTCTCAAGTGTCCAGCACATTTTTGGTTTGCCCTGTTTTACACTTTTGTACTATAGCAGGGGTTCAACAGCAATATTTGAACTCATTATCTGATTCATTGTGCTCTCTCATTGCTGTGATTATTGTACCCATTTCATTAAGTTTAACAAAATAGTTCCAACTTTTGGTGCCTTTTATTTTTGTGGGTAAAAAAAATGTTTCATTTAACCATCAACTAAAGATCTGTCTGTAAACTAGCATAGAGCCTCGTGCATATTTTTAGGCAATTTATCATTATCCTTGGTCTATGTGACGTGTTAGCACAAGATAACATGAACTTCGTTGTTACTTTCTTTTGCCATCCATGTGACTAGAACAGAACAATTGCTTTGATCTGATCTAATAGTACAAAACTTGTGCTGTCTTTCCACAGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAAGCTGTTAAAGACAAGCCCAGTATGGATACCGGAAGTAAATCCAGAAACAGCACAAAGGTGAAGTGGTCTAAGTTTTCCCCCCACTTTTATCCCCATTCTTTAAATCAAAGAAAACTTCAATTTTTATTTTATACTTTTTCCTTAACTGAGAATTTTAGGATAGCAACCAATTTTTTTTTAATCTTTGCAGAGGTCACTAGATGGGTCGATTAGAAACAGCAATCCGAAGCTACTTGAAGAGAGTTATGGAGAGGACGAGGATGAGCACGGTGATACGCTCTGTGGGAGTTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACCGTAGCGCGCGGAAACACCTTAATGTAAAGCACATTTTGTGGCAGTTAACCTTTATGTGTCTTGGGAAAACTCTTGGTAAGGACCAAAAGAAGTGAAGGTACATGTTAGGGGATTTACTTGTGAGGGGTTTATAGGGGGTTATAAAGTTAACACTCTAACGGATAAGCAAGCATGAGTTGAAGCTAGTTTTCTTTTCGTTTTATTCATACATGTTCGTGTCGTATAGTGTTCGGTGTTTAAAGATTGAATCTCGTCTTCTTCGTTTATAATATGAAATGATCTGATCCTTCATGTTAGGCTATATTTCTTGTGGGGTTTTGGCCTTTTGGGGCATCATTATTTGGCAGTTATTATTTAGCATACAAGTAAGCTTGTGTTGACTCTACTGTCTAAAGATTGCTCTTTTGGAGTGGTTAAATTTCAGATATGTTTGAATTC

mRNA sequence

ATGAGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAAGCTGTTAAAGACAAGCCCAGTATGGATACCGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTAGAAACAGCAATCCGAAGCTACTTGAAGAGAGTTATGGAGAGGACGAGGATGAGCACGGTGATACGCTCTGTGGGAGTTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACCGTAGCGCGCGGAAACACCTTAATGTAAAGCACATTTTGTGGCAGTTAACCTTTATGTGTCTTGGGAAAACTCTTGGTAAGGACCAAAAGAAGTGAAGGTACATGTTAGGGGATTTACTTGTGAGGGGTTTATAGGGGGTTATAAAGTTAACACTCTAACGGATAAGCAAGCATGAGTTGAAGCTAGTTTTCTTTTCGTTTTATTCATACATGTTCGTGTCGTATAGTGTTCGGTGTTTAAAGATTGAATCTCGTCTTCTTCGTTTATAATATGAAATGATCTGATCCTTCATGTTAGGCTATATTTCTTGTGGGGTTTTGGCCTTTTGGGGCATCATTATTTGGCAGTTATTATTTAGCATACAAGTAAGCTTGTGTTGACTCTACTGTCTAAAGATTGCTCTTTTGGAGTGGTTAAATTTCAGATATGTTTGAATTC

Coding sequence (CDS)

ATGAGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCATCTGGAAGGAAAGCTGTTAAAGACAAGCCCAGTATGGATACCGGAAGTAAATCCAGAAACAGCACAAAGAGGTCACTAGATGGGTCGATTAGAAACAGCAATCCGAAGCTACTTGAAGAGAGTTATGGAGAGGACGAGGATGAGCACGGTGATACGCTCTGTGGGAGTTGTGGTGGGAACTACAACGCAGACGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGAGGATAACACCTGCCAAGGCTGAGAATATCAAGCAATACAAATGCCCCTCTTGCAGCACAAAGAGAGGAAGACCGTAG

Protein sequence

MRKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRP

Homology

[Close]

BLAST of Lsi04G009820 vs. ExPASy Swiss-Prot
Match: Q9FFF5 (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.3e-52
Identity = 95/125 (76.00%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEES 61
           RKRLFS+INDLPTLFEV +GRK +KD KPSMD GSKSRN  KRS++G  + S PKL+EES
Sbjct: 117 RKRLFSLINDLPTLFEVVTGRKPIKDGKPSMDLGSKSRNGVKRSIEGQTK-STPKLMEES 176

Query: 62  YGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCS 121
           Y +++DEHGDTLCGSCGGNY  DEFWI CD+CERW+HGKCV+ITPAKAE+IKQYKCPSC 
Sbjct: 177 YEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPSCC 236

Query: 122 TKRGR 126
           TK+GR
Sbjct: 237 TKKGR 240

[Close]

BLAST of Lsi04G009820 vs. ExPASy Swiss-Prot
Match: Q9SRM4 (PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=AL2 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.9e-51
Identity = 94/127 (74.02%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEES 61
           RKRLFS+INDLPTLF+V +GRKA+KD KPS D+GSKSRN TKRS+DG  ++S PKL+EES
Sbjct: 119 RKRLFSLINDLPTLFDVVTGRKAMKDNKPSSDSGSKSRNGTKRSIDGQTKSSTPKLMEES 178

Query: 62  Y--GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPS 121
           Y   E+EDEHGDTLCGSCGG+Y  +EFWI CD+CERW+HGKCV+ITPAKAE+IKQYKCP 
Sbjct: 179 YEEEEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPP 238

Query: 122 CSTKRGR 126
           C  K+GR
Sbjct: 239 CCAKKGR 245

[Close]

BLAST of Lsi04G009820 vs. ExPASy Swiss-Prot
Match: B8AMA8 (PHD finger protein ALFIN-LIKE 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_14081 PE=3 SV=2)

HSP 1 Score: 167.5 bits (423), Expect = 9.4e-41
Identity = 74/124 (59.68%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLF+MINDLPT++E    RK V+D+  +D+  KS++STKR+ +G ++ S  +++ E Y
Sbjct: 122 RKRLFNMINDLPTVYEALVDRKHVRDRSGVDSSGKSKHSTKRTGEGQVKRS--RVVAEEY 181

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
            +D++EH +T CG+CGG YNA+EFWIGCDICERWFHGKCVRITPAKAE+IK YKCP CS+
Sbjct: 182 EDDDEEHNETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCSS 241

Query: 122 KRGR 126
              +
Sbjct: 242 SSSK 243

[Close]

BLAST of Lsi04G009820 vs. ExPASy Swiss-Prot
Match: Q84TV4 (PHD finger protein ALFIN-LIKE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0818300 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 9.4e-41
Identity = 74/124 (59.68%), Postives = 99/124 (79.84%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLF+MINDLPT++E    RK V+D+  +D+  KS++STKR+ +G ++ S  +++ E Y
Sbjct: 122 RKRLFNMINDLPTVYEALVDRKHVRDRSGVDSSGKSKHSTKRTGEGQVKRS--RVVAEEY 181

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
            +D++EH +T CG+CGG YNA+EFWIGCDICERWFHGKCVRITPAKAE+IK YKCP CS+
Sbjct: 182 EDDDEEHNETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCSS 241

Query: 122 KRGR 126
              +
Sbjct: 242 SSSK 243

[Close]

BLAST of Lsi04G009820 vs. ExPASy Swiss-Prot
Match: A2Y0Q2 (PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18576 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.0e-40
Identity = 76/126 (60.32%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVK--DKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEE 61
           RKRLF M+NDLPT++EV SG +  K  D+  MD  S+++ S+K + D +   +N K  +E
Sbjct: 132 RKRLFGMMNDLPTVYEVVSGSRQSKERDRSGMDNSSRNKISSKHTSDVARVENNIKEEDE 191

Query: 62  SYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSC 121
            Y ED+ +H +TLCG+CGG Y+ADEFWIGCD+CERW+HGKCV+ITPAKAE+IKQYKCPSC
Sbjct: 192 GYDEDDGDHSETLCGTCGGIYSADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSC 251

Query: 122 STKRGR 126
           S+KR R
Sbjct: 252 SSKRPR 257

[Close]

BLAST of Lsi04G009820 vs. ExPASy TrEMBL
Match: A0A5D3DUV1 (PHD finger protein ALFIN-LIKE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00130 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.4e-65
Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGS RNSNPKLLEESY
Sbjct: 117 RKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSTRNSNPKLLEESY 176

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
           GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERW+HGKCVRITPAKAENIKQYKCPSCST
Sbjct: 177 GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAENIKQYKCPSCST 236

Query: 122 KRGR 126
           KRGR
Sbjct: 237 KRGR 240

[Close]

BLAST of Lsi04G009820 vs. ExPASy TrEMBL
Match: A0A1S3CJ59 (PHD finger protein ALFIN-LIKE 2-like OS=Cucumis melo OX=3656 GN=LOC103501445 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.4e-65
Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGS RNSNPKLLEESY
Sbjct: 117 RKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSTRNSNPKLLEESY 176

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
           GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERW+HGKCVRITPAKAENIKQYKCPSCST
Sbjct: 177 GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAENIKQYKCPSCST 236

Query: 122 KRGR 126
           KRGR
Sbjct: 237 KRGR 240

[Close]

BLAST of Lsi04G009820 vs. ExPASy TrEMBL
Match: A0A6J1J9S6 (PHD finger protein ALFIN-LIKE 2-like OS=Cucurbita maxima OX=3661 GN=LOC111484838 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64
Identity = 120/124 (96.77%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGSIRNSNPKLL+ESY
Sbjct: 117 RKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLDESY 176

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
           GE+EDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKA+NIKQYKCPSCST
Sbjct: 177 GEEEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKADNIKQYKCPSCST 236

Query: 122 KRGR 126
           KRGR
Sbjct: 237 KRGR 240

[Close]

BLAST of Lsi04G009820 vs. ExPASy TrEMBL
Match: A0A6J1GZB1 (PHD finger protein ALFIN-LIKE 2-like OS=Cucurbita moschata OX=3662 GN=LOC111458509 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64
Identity = 120/124 (96.77%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGSIRNSNPKLL+ESY
Sbjct: 117 RKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLDESY 176

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
           GE+EDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKA+NIKQYKCPSCST
Sbjct: 177 GEEEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKADNIKQYKCPSCST 236

Query: 122 KRGR 126
           KRGR
Sbjct: 237 KRGR 240

[Close]

BLAST of Lsi04G009820 vs. ExPASy TrEMBL
Match: A0A6J1DRX5 (PHD finger protein ALFIN-LIKE 2-like OS=Momordica charantia OX=3673 GN=LOC111023751 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.3e-64
Identity = 119/125 (95.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLFS+INDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRS+DGSIR+SN KLL+ESY
Sbjct: 117 RKRLFSLINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSIDGSIRSSNLKLLDESY 176

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
           GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST
Sbjct: 177 GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 236

Query: 122 KRGRP 127
           KRGRP
Sbjct: 237 KRGRP 241

[Close]

BLAST of Lsi04G009820 vs. NCBI nr
Match: XP_038893084.1 (PHD finger protein ALFIN-LIKE 2-like [Benincasa hispida])

HSP 1 Score: 258.1 bits (658), Expect = 4.0e-65
Identity = 122/124 (98.39%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRS+DGSIRNSNPKLLEESY
Sbjct: 117 RKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSVDGSIRNSNPKLLEESY 176

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
           GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST
Sbjct: 177 GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 236

Query: 122 KRGR 126
           KRGR
Sbjct: 237 KRGR 240

[Close]

BLAST of Lsi04G009820 vs. NCBI nr
Match: XP_008463243.1 (PREDICTED: PHD finger protein ALFIN-LIKE 2-like [Cucumis melo] >KAA0057678.1 PHD finger protein ALFIN-LIKE 2-like [Cucumis melo var. makuwa] >TYK27463.1 PHD finger protein ALFIN-LIKE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 256.1 bits (653), Expect = 1.5e-64
Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGS RNSNPKLLEESY
Sbjct: 117 RKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSTRNSNPKLLEESY 176

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
           GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERW+HGKCVRITPAKAENIKQYKCPSCST
Sbjct: 177 GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAENIKQYKCPSCST 236

Query: 122 KRGR 126
           KRGR
Sbjct: 237 KRGR 240

[Close]

BLAST of Lsi04G009820 vs. NCBI nr
Match: XP_022957000.1 (PHD finger protein ALFIN-LIKE 2-like [Cucurbita moschata] >XP_022987222.1 PHD finger protein ALFIN-LIKE 2-like [Cucurbita maxima] >KAG6600924.1 PHD finger protein ALFIN-LIKE 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255.4 bits (651), Expect = 2.6e-64
Identity = 120/124 (96.77%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRSLDGSIRNSNPKLL+ESY
Sbjct: 117 RKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLDESY 176

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
           GE+EDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKA+NIKQYKCPSCST
Sbjct: 177 GEEEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKADNIKQYKCPSCST 236

Query: 122 KRGR 126
           KRGR
Sbjct: 237 KRGR 240

[Close]

BLAST of Lsi04G009820 vs. NCBI nr
Match: XP_011654991.1 (PHD finger protein ALFIN-LIKE 2 [Cucumis sativus] >KAE8648026.1 hypothetical protein Csa_005878 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 3.4e-64
Identity = 120/124 (96.77%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLFSMINDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKR+LDGS RNSNPKLLEESY
Sbjct: 117 RKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRTLDGSTRNSNPKLLEESY 176

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
           GEDEDEHGDTLCGSCGGNYNADEFWIGCDICE+WFHGKCVRITPAKAENIKQYKCPSCST
Sbjct: 177 GEDEDEHGDTLCGSCGGNYNADEFWIGCDICEKWFHGKCVRITPAKAENIKQYKCPSCST 236

Query: 122 KRGR 126
           KRGR
Sbjct: 237 KRGR 240

[Close]

BLAST of Lsi04G009820 vs. NCBI nr
Match: XP_022156923.1 (PHD finger protein ALFIN-LIKE 2-like [Momordica charantia])

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 119/125 (95.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEESY 61
           RKRLFS+INDLPTLFEVASGRKAVKDKPSMD+GSKSRNSTKRS+DGSIR+SN KLL+ESY
Sbjct: 117 RKRLFSLINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSIDGSIRSSNLKLLDESY 176

Query: 62  GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 121
           GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST
Sbjct: 177 GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCST 236

Query: 122 KRGRP 127
           KRGRP
Sbjct: 237 KRGRP 241

[Close]

BLAST of Lsi04G009820 vs. TAIR 10
Match: AT5G05610.1 (alfin-like 1 )

HSP 1 Score: 204.9 bits (520), Expect = 3.8e-53
Identity = 95/125 (76.00%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEES 61
           RKRLFS+INDLPTLFEV +GRK +KD KPSMD GSKSRN  KRS++G  + S PKL+EES
Sbjct: 117 RKRLFSLINDLPTLFEVVTGRKPIKDGKPSMDLGSKSRNGVKRSIEGQTK-STPKLMEES 176

Query: 62  YGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCS 121
           Y +++DEHGDTLCGSCGGNY  DEFWI CD+CERW+HGKCV+ITPAKAE+IKQYKCPSC 
Sbjct: 177 YEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPSCC 236

Query: 122 TKRGR 126
           TK+GR
Sbjct: 237 TKKGR 240

[Close]

BLAST of Lsi04G009820 vs. TAIR 10
Match: AT5G05610.2 (alfin-like 1 )

HSP 1 Score: 204.9 bits (520), Expect = 3.8e-53
Identity = 95/125 (76.00%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEES 61
           RKRLFS+INDLPTLFEV +GRK +KD KPSMD GSKSRN  KRS++G  + S PKL+EES
Sbjct: 117 RKRLFSLINDLPTLFEVVTGRKPIKDGKPSMDLGSKSRNGVKRSIEGQTK-STPKLMEES 176

Query: 62  YGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCS 121
           Y +++DEHGDTLCGSCGGNY  DEFWI CD+CERW+HGKCV+ITPAKAE+IKQYKCPSC 
Sbjct: 177 YEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPSCC 236

Query: 122 TKRGR 126
           TK+GR
Sbjct: 237 TKKGR 240

[Close]

BLAST of Lsi04G009820 vs. TAIR 10
Match: AT3G11200.1 (alfin-like 2 )

HSP 1 Score: 201.4 bits (511), Expect = 4.2e-52
Identity = 94/127 (74.02%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEES 61
           RKRLFS+INDLPTLF+V +GRKA+KD KPS D+GSKSRN TKRS+DG  ++S PKL+EES
Sbjct: 119 RKRLFSLINDLPTLFDVVTGRKAMKDNKPSSDSGSKSRNGTKRSIDGQTKSSTPKLMEES 178

Query: 62  Y--GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPS 121
           Y   E+EDEHGDTLCGSCGG+Y  +EFWI CD+CERW+HGKCV+ITPAKAE+IKQYKCP 
Sbjct: 179 YEEEEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPP 238

Query: 122 CSTKRGR 126
           C  K+GR
Sbjct: 239 CCAKKGR 245

[Close]

BLAST of Lsi04G009820 vs. TAIR 10
Match: AT3G11200.2 (alfin-like 2 )

HSP 1 Score: 201.4 bits (511), Expect = 4.2e-52
Identity = 94/127 (74.02%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKD-KPSMDTGSKSRNSTKRSLDGSIRNSNPKLLEES 61
           RKRLFS+INDLPTLF+V +GRKA+KD KPS D+GSKSRN TKRS+DG  ++S PKL+EES
Sbjct: 106 RKRLFSLINDLPTLFDVVTGRKAMKDNKPSSDSGSKSRNGTKRSIDGQTKSSTPKLMEES 165

Query: 62  Y--GEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPS 121
           Y   E+EDEHGDTLCGSCGG+Y  +EFWI CD+CERW+HGKCV+ITPAKAE+IKQYKCP 
Sbjct: 166 YEEEEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPP 225

Query: 122 CSTKRGR 126
           C  K+GR
Sbjct: 226 CCAKKGR 232

[Close]

BLAST of Lsi04G009820 vs. TAIR 10
Match: AT3G42790.1 (alfin-like 3 )

HSP 1 Score: 154.5 bits (389), Expect = 5.8e-38
Identity = 77/129 (59.69%), Postives = 99/129 (76.74%), Query Frame = 0


Query: 2   RKRLFSMINDLPTLFEVASGRKAVKDKPSM--DTGSKSRNSTK-RSLDG-SIRNSNPKLL 61
           RKRLF+MIND+PT+FEV +G    KDK S     G+KS++++K R+ +G S +   PK  
Sbjct: 121 RKRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKEE 180

Query: 62  EESYGE-DEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKC 121
           +E   E DED+HG+TLCG+CG +  ADEFWI CD+CE+WFHGKCV+ITPA+AE+IKQYKC
Sbjct: 181 DEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKC 240

Query: 122 PSCSTKRGR 126
           PSCS KR R
Sbjct: 241 PSCSNKRAR 249

The following BLAST results are available for this feature:

BLAST of Lsi04G009820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFF5	5.3e-52	76.00	PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1	[more]
Q9SRM4	5.9e-51	74.02	PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=AL2 PE=1 SV=1	[more]
B8AMA8	9.4e-41	59.68	PHD finger protein ALFIN-LIKE 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_14...	[more]
Q84TV4	9.4e-41	59.68	PHD finger protein ALFIN-LIKE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03...	[more]
A2Y0Q2	8.0e-40	60.32	PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18...	[more]

BLAST of Lsi04G009820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUV1	7.4e-65	97.58	PHD finger protein ALFIN-LIKE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3CJ59	7.4e-65	97.58	PHD finger protein ALFIN-LIKE 2-like OS=Cucumis melo OX=3656 GN=LOC103501445 PE=...	[more]
A0A6J1J9S6	1.3e-64	96.77	PHD finger protein ALFIN-LIKE 2-like OS=Cucurbita maxima OX=3661 GN=LOC111484838...	[more]
A0A6J1GZB1	1.3e-64	96.77	PHD finger protein ALFIN-LIKE 2-like OS=Cucurbita moschata OX=3662 GN=LOC1114585...	[more]
A0A6J1DRX5	6.3e-64	95.20	PHD finger protein ALFIN-LIKE 2-like OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Lsi04G009820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893084.1	4.0e-65	98.39	PHD finger protein ALFIN-LIKE 2-like [Benincasa hispida]	[more]
XP_008463243.1	1.5e-64	97.58	PREDICTED: PHD finger protein ALFIN-LIKE 2-like [Cucumis melo] >KAA0057678.1 PHD...	[more]
XP_022957000.1	2.6e-64	96.77	PHD finger protein ALFIN-LIKE 2-like [Cucurbita moschata] >XP_022987222.1 PHD fi...	[more]
XP_011654991.1	3.4e-64	96.77	PHD finger protein ALFIN-LIKE 2 [Cucumis sativus] >KAE8648026.1 hypothetical pro...	[more]
XP_022156923.1	1.3e-63	95.20	PHD finger protein ALFIN-LIKE 2-like [Momordica charantia]	[more]

BLAST of Lsi04G009820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05610.1	3.8e-53	76.00	alfin-like 1	[more]
AT5G05610.2	3.8e-53	76.00	alfin-like 1	[more]
AT3G11200.1	4.2e-52	74.02	alfin-like 2	[more]
AT3G11200.2	4.2e-52	74.02	alfin-like 2	[more]
AT3G42790.1	5.8e-38	59.69	alfin-like 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001965	Zinc finger, PHD-type	SMART	SM00249	PHD_3	coord: 72..120 e-value: 3.4E-10 score: 49.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 62..121 e-value: 1.3E-26 score: 93.8
IPR019787	Zinc finger, PHD-finger	PFAM	PF00628	PHD	coord: 73..121 e-value: 1.9E-11 score: 43.7
IPR019787	Zinc finger, PHD-finger	PROSITE	PS50016	ZF_PHD_2	coord: 70..122 score: 9.445499
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..68
None	No IPR available	PANTHER	PTHR12321:SF122	PHD FINGER PROTEIN ALFIN-LIKE 2	coord: 2..125
IPR045104	Alfin	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 2..125
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 73..119
IPR044104	Alfin1-like, PHD finger	CDD	cd15613	PHD_AL_plant	coord: 72..122 e-value: 6.47435E-30 score: 100.262
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 61..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G009820.1	Lsi04G009820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0042393	histone binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0003712	transcription coregulator activity