Lsi04G009660 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G009660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Gag-pro-like protein
Location	chr04: 10144222 .. 10144443 (+)
RNA-Seq Expression	Lsi04G009660
Synteny	Lsi04G009660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGAGCCATTAATCGTCCATTATGAGCAGAAGCCGAGTATTATTCCATGTATCCAGATGCCTAAGATAATGATCGTTGAAGTACCAAGTCCTTTTGCTTATAAGGATAGTCGAGATGTACCAAGGAGGTACGAGTGCCAATTCATTACAAATAGTGTTAATTCTGCAGCGACTGGAGGGATGACTCGTAGTGGAGATGTTATACACCGGATAATCTGA

mRNA sequence

ATGCGAGAGCCATTAATCGTCCATTATGAGCAGAAGCCGAGTATTATTCCATGTATCCAGATGCCTAAGATAATGATCGTTGAAGTACCAAGTCCTTTTGCTTATAAGGATAGTCGAGATGTACCAAGGAGGTACGAGTGCCAATTCATTACAAATAGTGTTAATTCTGCAGCGACTGGAGGGATGACTCGTAGTGGAGATGTTATACACCGGATAATCTGA

Coding sequence (CDS)

ATGCGAGAGCCATTAATCGTCCATTATGAGCAGAAGCCGAGTATTATTCCATGTATCCAGATGCCTAAGATAATGATCGTTGAAGTACCAAGTCCTTTTGCTTATAAGGATAGTCGAGATGTACCAAGGAGGTACGAGTGCCAATTCATTACAAATAGTGTTAATTCTGCAGCGACTGGAGGGATGACTCGTAGTGGAGATGTTATACACCGGATAATCTGA

Protein sequence

MREPLIVHYEQKPSIIPCIQMPKIMIVEVPSPFAYKDSRDVPRRYECQFITNSVNSAATGGMTRSGDVIHRII

Homology

[Close]

BLAST of Lsi04G009660 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1   MREPLIVHYEQKPSIIPCIQMPKIMIVEVPSPFAYKDSRDVPRRYECQFITNSVNSAATG 60
           M +P ++HYE+KPSI+  IQ PK M VE+P PFAYKD+  VP +YECQFIT++V SA  G
Sbjct: 604 MWKPFVIHYEEKPSIMSYIQKPKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVG 663

Query: 61  GMTRSG 67
           G+TRSG
Sbjct: 664 GITRSG 669

[Close]

BLAST of Lsi04G009660 vs. ExPASy TrEMBL
Match: A0A5D3C1I2 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003070 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MREPLIVHYEQKPSIIPCIQMPKIMIVEVPSPFAYKDSRDVPRRYECQFITNSVNSAATG 60
           M +PL++HYE+KPSI+  +Q PK M VE+P PFAYKD+  +P +YECQFIT++V SA  G
Sbjct: 207 MWKPLVIHYEEKPSIMSYMQKPKTMTVEIPGPFAYKDNHAIPWKYECQFITDNVVSATVG 266

Query: 61  GMTRSG 67
           G+TRSG
Sbjct: 267 GITRSG 272

[Close]

BLAST of Lsi04G009660 vs. ExPASy TrEMBL
Match: A0A5A7TW53 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00640 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.1e-15
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 3   EPLIVHYEQKPSIIPCIQMPKIMIVEVPSPFAYKDSRDVPRRYECQFITNSVNSAATGGM 62
           +PL++HYE+KPSI+  IQ PK M +E+PSPFAYKD+  VP +YECQFITN+V S    G+
Sbjct: 209 KPLVIHYEEKPSIMSYIQKPKAMTIEIPSPFAYKDNHVVPWKYECQFITNNVVSTTVEGL 268

Query: 63  TRSG 67
           TRSG
Sbjct: 269 TRSG 272

[Close]

BLAST of Lsi04G009660 vs. ExPASy TrEMBL
Match: A0A5A7TUT4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001540 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-15
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1   MREPLIVHYEQKPSIIPCIQMPKIMIVEVPSPFAYKDSRDVPRRYECQFITNSVNSAATG 60
           M +PL++HYE+K SI+  IQ PK M VE+P PFAYKD+  VP +YECQFIT++V SA  G
Sbjct: 358 MWKPLVIHYEEKSSIMSYIQKPKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVG 417

Query: 61  GMTRSG 67
           G+TRSG
Sbjct: 418 GITRSG 423

[Close]

BLAST of Lsi04G009660 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-14
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MREPLIVHYEQKPSIIPCIQMPKIMIVEVPSPFAYKDSRDVPRRYECQFITNSVNSAATG 60
           M +PL++HYE+KPSI+  IQ PK M VE+P PFAYKD+  VP +YECQFIT++V  A   
Sbjct: 604 MWKPLVIHYEEKPSIMSYIQKPKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVFATVE 663

Query: 61  GMTRSG 67
           G+TRSG
Sbjct: 664 GITRSG 669

[Close]

BLAST of Lsi04G009660 vs. NCBI nr
Match: TYK05801.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 3.8e-15
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1   MREPLIVHYEQKPSIIPCIQMPKIMIVEVPSPFAYKDSRDVPRRYECQFITNSVNSAATG 60
           M +PL++HYE+KPSI+  +Q PK M VE+P PFAYKD+  +P +YECQFIT++V SA  G
Sbjct: 207 MWKPLVIHYEEKPSIMSYMQKPKTMTVEIPGPFAYKDNHAIPWKYECQFITDNVVSATVG 266

Query: 61  GMTRSG 67
           G+TRSG
Sbjct: 267 GITRSG 272

[Close]

BLAST of Lsi04G009660 vs. NCBI nr
Match: KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 3.8e-15
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1   MREPLIVHYEQKPSIIPCIQMPKIMIVEVPSPFAYKDSRDVPRRYECQFITNSVNSAATG 60
           M +P ++HYE+KPSI+  IQ PK M VE+P PFAYKD+  VP +YECQFIT++V SA  G
Sbjct: 604 MWKPFVIHYEEKPSIMSYIQKPKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVG 663

Query: 61  GMTRSG 67
           G+TRSG
Sbjct: 664 GITRSG 669

[Close]

BLAST of Lsi04G009660 vs. NCBI nr
Match: KAA0045605.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYK02652.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 6.4e-15
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 3   EPLIVHYEQKPSIIPCIQMPKIMIVEVPSPFAYKDSRDVPRRYECQFITNSVNSAATGGM 62
           +PL++HYE+KPSI+  IQ PK M +E+PSPFAYKD+  VP +YECQFITN+V S    G+
Sbjct: 209 KPLVIHYEEKPSIMSYIQKPKAMTIEIPSPFAYKDNHVVPWKYECQFITNNVVSTTVEGL 268

Query: 63  TRSG 67
           TRSG
Sbjct: 269 TRSG 272

[Close]

BLAST of Lsi04G009660 vs. NCBI nr
Match: KAA0046608.1 (uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-14
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1   MREPLIVHYEQKPSIIPCIQMPKIMIVEVPSPFAYKDSRDVPRRYECQFITNSVNSAATG 60
           M +PL++HYE+K SI+  IQ PK M VE+P PFAYKD+  VP +YECQFIT++V SA  G
Sbjct: 358 MWKPLVIHYEEKSSIMSYIQKPKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVSATVG 417

Query: 61  GMTRSG 67
           G+TRSG
Sbjct: 418 GITRSG 423

[Close]

BLAST of Lsi04G009660 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 5.5e-14
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 1   MREPLIVHYEQKPSIIPCIQMPKIMIVEVPSPFAYKDSRDVPRRYECQFITNSVNSAATG 60
           M +PL++HYE+KPSI+  IQ PK M VE+P PFAYKD+  VP +YECQFIT++V  A   
Sbjct: 604 MWKPLVIHYEEKPSIMSYIQKPKAMTVEIPGPFAYKDNHAVPWKYECQFITDNVVFATVE 663

Query: 61  GMTRSG 67
           G+TRSG
Sbjct: 664 GITRSG 669

The following BLAST results are available for this feature:

BLAST of Lsi04G009660 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G009660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V681	1.8e-15	62.12	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C1I2	1.8e-15	60.61	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G...	[more]
A0A5A7TW53	3.1e-15	62.50	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280...	[more]
A0A5A7TUT4	5.3e-15	62.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VAU5	2.6e-14	60.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lsi04G009660 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05801.1	3.8e-15	60.61	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0061241.1	3.8e-15	62.12	uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]	[more]
KAA0045605.1	6.4e-15	62.50	Gag-pro-like protein [Cucumis melo var. makuwa] >TYK02652.1 Gag-pro-like protein...	[more]
KAA0046608.1	1.1e-14	62.12	uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa]	[more]
KAA0065293.1	5.5e-14	60.61	uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi04G009660 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G009660.1	Lsi04G009660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity