Lsi04G009300 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G009300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	thioredoxin H1-like
Location	chr04: 9612602 .. 9613442 (-)
RNA-Seq Expression	Lsi04G009300
Synteny	Lsi04G009300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTATATTTTATTTCCTTCTAAAATAAACAAAACCCTTTAGCTCATTTTTCCCTTTGCCTTTTCTTCTAATAAGGTATTGGAAAAATGGGTGATATGGGGAAAGTAGTTTCATGCCACAGTGTTAGTTCATGGAAGCAACAGCTCCTCAAAGCCAAACAATACAATAAATTGGTACTTTTCATCATCTCCTTCTAATTATTTCCCTCTCTCCCTTTCATATGCAAACAAATCTTGATAGCTTTTTACAACAATATTTGCAAATATTTTGTCCACAGGTCGTCGTGAATTTTACCGCAACATGGTGCGGCCCGTGTCGTGCCATGGCTCCAATTCTTGAAGACATAGCAAGTAAAATGAGTAATAACAATGTTATATTTTTAAAAGTGGACGTTGATGAACTCATGGTACTGTTAACAACTTAACGTAACTTATCTTAATTACTATTTAAAACTTCTTTATTATTAATTAGAGGCAGTCATATTGTGACGACTATATACTGTTTTTTTTTTTAGGGTGTTGCCAATGAGTTGGGAGTGGGAGCTCTGCCCTCGTTTCAATTCTTCAAGAATGGAAAGTTAGTGGACAAGTTCGTGGGGGCAAGAAAAGATATATTACACAACACTGTATCCAAACATGTTGCATGAAGCTGCTTTTTGGATCCAAAGTAATATTTGGATGCAGTTTACATTGCGTCAATTTTCATGCTTTCTTTTTAATCATAAAGGAAAATATATTTTTTTCAAAAAAAAAATTGTCATGTTGTAACCTGTGATTATGCACTTGGATGGTCTTAAAGATGCACCCAAGTATTTTTCAATTAAGCAAAATCAAATGTTGAGT

mRNA sequence

CGTATATTTTATTTCCTTCTAAAATAAACAAAACCCTTTAGCTCATTTTTCCCTTTGCCTTTTCTTCTAATAAGGTATTGGAAAAATGGGTGATATGGGGAAAGTAGTTTCATGCCACAGTGTTAGTTCATGGAAGCAACAGCTCCTCAAAGCCAAACAATACAATAAATTGGTCGTCGTGAATTTTACCGCAACATGGTGCGGCCCGTGTCGTGCCATGGCTCCAATTCTTGAAGACATAGCAAGTAAAATGAGTAATAACAATGTTATATTTTTAAAAGTGGACGTTGATGAACTCATGGGTGTTGCCAATGAGTTGGGAGTGGGAGCTCTGCCCTCGTTTCAATTCTTCAAGAATGGAAAGTTAGTGGACAAGTTCGTGGGGGCAAGAAAAGATATATTACACAACACTGTATCCAAACATGTTGCATGAAGCTGCTTTTTGGATCCAAAGTAATATTTGGATGCAGTTTACATTGCGTCAATTTTCATGCTTTCTTTTTAATCATAAAGGAAAATATATTTTTTTCAAAAAAAAAATTGTCATGTTGTAACCTGTGATTATGCACTTGGATGGTCTTAAAGATGCACCCAAGTATTTTTCAATTAAGCAAAATCAAATGTTGAGT

Coding sequence (CDS)

ATGGGTGATATGGGGAAAGTAGTTTCATGCCACAGTGTTAGTTCATGGAAGCAACAGCTCCTCAAAGCCAAACAATACAATAAATTGGTCGTCGTGAATTTTACCGCAACATGGTGCGGCCCGTGTCGTGCCATGGCTCCAATTCTTGAAGACATAGCAAGTAAAATGAGTAATAACAATGTTATATTTTTAAAAGTGGACGTTGATGAACTCATGGGTGTTGCCAATGAGTTGGGAGTGGGAGCTCTGCCCTCGTTTCAATTCTTCAAGAATGGAAAGTTAGTGGACAAGTTCGTGGGGGCAAGAAAAGATATATTACACAACACTGTATCCAAACATGTTGCATGA

Protein sequence

MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNNVIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA

Homology

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BLAST of Lsi04G009300 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.2e-31
Identity = 59/111 (53.15%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 5   GKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNNVIFL 64
           G+V++CH+V +W +QL KA +   LVVV+FTA+WCGPCR +AP   D+A K+   NV+FL
Sbjct: 6   GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFL 65

Query: 65  KVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA 116
           KVD DEL  VA++  + A+P+F F K GK++DK VGA+KD L +T++KH+A
Sbjct: 66  KVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Lsi04G009300 vs. ExPASy Swiss-Prot
Match: Q43636 (Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.9e-30
Identity = 59/111 (53.15%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 5   GKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNNVIFL 64
           G+V+ CH+V +W +QL K      L+VV+FTA+WCGPCR +AP L ++A K+   NV FL
Sbjct: 6   GQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLP--NVTFL 65

Query: 65  KVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA 116
           KVDVDEL  VA+E  V ++P+F F K GK++DK VGA+KD L  T++KH+A
Sbjct: 66  KVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMA 114

[Close]

BLAST of Lsi04G009300 vs. ExPASy Swiss-Prot
Match: Q39362 (Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-29
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 5   GKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNNVIFL 64
           G+V+ CH +  W  QL  AKQ NKL+V++FTA+WC PCR +AP+  D+A K   ++ IF 
Sbjct: 6   GQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFM-SSAIFF 65

Query: 65  KVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKH 114
           KVDVDEL  VA E GV A+P+F   K+G +VDK VGARK+ LH T++KH
Sbjct: 66  KVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKH 113

[Close]

BLAST of Lsi04G009300 vs. ExPASy Swiss-Prot
Match: P29449 (Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-28
Identity = 62/111 (55.86%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 5   GKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNNVIFL 64
           G+V  CH V  W +   K  +  KLVVV+FTA+WCGPCR +APIL DIA KM   +VIFL
Sbjct: 12  GQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMP--HVIFL 71

Query: 65  KVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA 116
           KVDVDEL  V+ E  V A+P+F F K+GK VD+ VGA+K+ L  T+ KH A
Sbjct: 72  KVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAA 120

[Close]

BLAST of Lsi04G009300 vs. ExPASy Swiss-Prot
Match: Q39239 (Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-27
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 5   GKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNNVIFL 64
           G+V+ CH+   W  QL KAK+ NKL+V++FTA+WC PCR +API  D+A K   ++ IF 
Sbjct: 6   GQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFM-SSAIFF 65

Query: 65  KVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKH 114
           KVDVDEL  VA E GV A+P+F F K G++VDK VGA K+ L   + KH
Sbjct: 66  KVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113

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BLAST of Lsi04G009300 vs. ExPASy TrEMBL
Match: A0A5D3DCH1 (Thioredoxin H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00270 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M DMGKVVSCH+V SWKQQLLKAKQYNKLVVVNFTATWC PCR MAP+L+D+A+KMS NN
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMS-NN 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA 116
           VI LKVDVDELM VANE GVGALPSFQFFKNGKLVDKFVGARKD+LH TVSKHVA
Sbjct: 61  VIVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]

BLAST of Lsi04G009300 vs. ExPASy TrEMBL
Match: A0A1S3CMM6 (thioredoxin H1-like OS=Cucumis melo OX=3656 GN=LOC103502660 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.1e-50
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M DMGKVVSCH+V SWKQQLLKAKQYNKLVVVNFTATWC PCR MAP+L+D+A+KMS NN
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMS-NN 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA 116
           VI LKVDVDELM VANE GVGALPSFQFFKNGKLVDKFVGARKD+LH TVSKHVA
Sbjct: 61  VIVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]

BLAST of Lsi04G009300 vs. ExPASy TrEMBL
Match: A0A5A7U8S0 (Thioredoxin H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00820 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.1e-50
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M DMGKVVSCH+V SWKQQLLKAKQYNKLVVVNFTATWC PCR MAP+L+D+A+KMS NN
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMS-NN 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHV 115
           VI LKVDVDELM VANE GVGALPSFQFFKNGKLVDKFVGARKD+LH TVSKHV
Sbjct: 61  VIVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHV 113

[Close]

BLAST of Lsi04G009300 vs. ExPASy TrEMBL
Match: A0A0A0KSB1 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G190500 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.3e-49
Identity = 99/115 (86.09%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M DMGKVVSCH+V SWKQQLLKAKQ NKLVVVNFTATWC PCR MAP+LED+A+KMS NN
Sbjct: 1   MNDMGKVVSCHTVRSWKQQLLKAKQCNKLVVVNFTATWCAPCRGMAPVLEDLANKMS-NN 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA 116
           V FLKVDVDELM VA+E GVGALPSFQFFKNGKLVDKFVGARKD+LH TVSKHVA
Sbjct: 61  VTFLKVDVDELMSVASEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]

BLAST of Lsi04G009300 vs. ExPASy TrEMBL
Match: A0A6J1CDG5 (thioredoxin H1-like OS=Momordica charantia OX=3673 GN=LOC111010214 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.7e-47
Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M +MGKVVSC SV SWKQQLLKAK+YNKLVVV FTATWCGPCRAMAP+LED+A K S  N
Sbjct: 1   MAEMGKVVSCRSVGSWKQQLLKAKKYNKLVVVKFTATWCGPCRAMAPVLEDLAKKTS--N 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA 116
           VIFLKVDVDELM VANELGVGA+PSFQFFKNGKLVDKFVGA KD+L NT+SKH A
Sbjct: 61  VIFLKVDVDELMRVANELGVGAIPSFQFFKNGKLVDKFVGANKDLLTNTLSKHAA 113

[Close]

BLAST of Lsi04G009300 vs. NCBI nr
Match: XP_038893273.1 (thioredoxin H1-like [Benincasa hispida])

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 102/114 (89.47%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M DMGKVVSCH+V SWKQQLLKAKQYNKLVVVNFTATWCGPCR MAP+LED+ASKM NN+
Sbjct: 1   MADMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCGPCRTMAPVLEDLASKMRNND 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHV 115
           V+FLKVDVDELM VANELGVGALPSFQFFKNGKLVDKFVGARKD+LH+TVSKHV
Sbjct: 61  VLFLKVDVDELMSVANELGVGALPSFQFFKNGKLVDKFVGARKDVLHSTVSKHV 114

[Close]

BLAST of Lsi04G009300 vs. NCBI nr
Match: XP_008464900.1 (PREDICTED: thioredoxin H1-like [Cucumis melo] >TYK21273.1 thioredoxin H1-like [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 4.4e-50
Identity = 100/115 (86.96%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M DMGKVVSCH+V SWKQQLLKAKQYNKLVVVNFTATWC PCR MAP+L+D+A+KMS NN
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMS-NN 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA 116
           VI LKVDVDELM VANE GVGALPSFQFFKNGKLVDKFVGARKD+LH TVSKHVA
Sbjct: 61  VIVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]

BLAST of Lsi04G009300 vs. NCBI nr
Match: KAA0051550.1 (thioredoxin H1-like [Cucumis melo var. makuwa])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M DMGKVVSCH+V SWKQQLLKAKQYNKLVVVNFTATWC PCR MAP+L+D+A+KMS NN
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMS-NN 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHV 115
           VI LKVDVDELM VANE GVGALPSFQFFKNGKLVDKFVGARKD+LH TVSKHV
Sbjct: 61  VIVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHV 113

[Close]

BLAST of Lsi04G009300 vs. NCBI nr
Match: XP_004149943.1 (thioredoxin H1 [Cucumis sativus] >KGN50606.1 hypothetical protein Csa_021443 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 4.8e-49
Identity = 99/115 (86.09%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M DMGKVVSCH+V SWKQQLLKAKQ NKLVVVNFTATWC PCR MAP+LED+A+KMS NN
Sbjct: 1   MNDMGKVVSCHTVRSWKQQLLKAKQCNKLVVVNFTATWCAPCRGMAPVLEDLANKMS-NN 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA 116
           V FLKVDVDELM VA+E GVGALPSFQFFKNGKLVDKFVGARKD+LH TVSKHVA
Sbjct: 61  VTFLKVDVDELMSVASEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

[Close]

BLAST of Lsi04G009300 vs. NCBI nr
Match: XP_022139257.1 (thioredoxin H1-like [Momordica charantia])

HSP 1 Score: 197.2 bits (500), Expect = 7.7e-47
Identity = 96/115 (83.48%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M +MGKVVSC SV SWKQQLLKAK+YNKLVVV FTATWCGPCRAMAP+LED+A K S  N
Sbjct: 1   MAEMGKVVSCRSVGSWKQQLLKAKKYNKLVVVKFTATWCGPCRAMAPVLEDLAKKTS--N 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA 116
           VIFLKVDVDELM VANELGVGA+PSFQFFKNGKLVDKFVGA KD+L NT+SKH A
Sbjct: 61  VIFLKVDVDELMRVANELGVGAIPSFQFFKNGKLVDKFVGANKDLLTNTLSKHAA 113

[Close]

BLAST of Lsi04G009300 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 134.8 bits (338), Expect = 4.4e-32
Identity = 59/111 (53.15%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 5   GKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNNVIFL 64
           G+V++CH+V +W +QL KA +   LVVV+FTA+WCGPCR +AP   D+A K+   NV+FL
Sbjct: 6   GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFL 65

Query: 65  KVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKHVA 116
           KVD DEL  VA++  + A+P+F F K GK++DK VGA+KD L +T++KH+A
Sbjct: 66  KVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Lsi04G009300 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 7.7e-29
Identity = 58/109 (53.21%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 5   GKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNNVIFL 64
           G+V+ CH+   W  QL KAK+ NKL+V++FTA+WC PCR +API  D+A K   ++ IF 
Sbjct: 6   GQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFM-SSAIFF 65

Query: 65  KVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKH 114
           KVDVDEL  VA E GV A+P+F F K G++VDK VGA K+ L   + KH
Sbjct: 66  KVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113

[Close]

BLAST of Lsi04G009300 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 )

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-26
Identity = 49/113 (43.36%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M   G+V++CH++  W +++  A +  KL+V++FTA+WC PCR +AP+  ++A K +  N
Sbjct: 1   MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFT--N 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKH 114
           V+F K+DVDEL  VA E  V A+P+F F K G ++D+ VGA KD ++  + KH
Sbjct: 61  VVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111

[Close]

BLAST of Lsi04G009300 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 )

HSP 1 Score: 110.5 bits (275), Expect = 8.8e-25
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 1   MGDMGKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNN 60
           M   G+V++CH+V  W ++L  A +  KL+V++FTATWC PCR +AP+  D+A K  + +
Sbjct: 1   MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKK--HLD 60

Query: 61  VIFLKVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKH 114
           V+F KVDVDEL  VA E  V A+P+F F K G++ +  VGA K+ +   + KH
Sbjct: 61  VVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111

[Close]

BLAST of Lsi04G009300 vs. TAIR 10
Match: AT3G17880.1 (tetraticopeptide domain-containing thioredoxin )

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-21
Identity = 45/109 (41.28%), Postives = 75/109 (68.81%), Query Frame = 0


Query: 5   GKVVSCHSVSSWKQQLLKAKQYNKLVVVNFTATWCGPCRAMAPILEDIASKMSNNNVIFL 64
           G+V+S HS S  + +   AK+ ++L+++ FTATWCGPCR M+P+  ++A++  ++ V+FL
Sbjct: 270 GEVISIHSTSELEAKTKAAKKASRLLILYFTATWCGPCRYMSPLYSNLATQ--HSRVVFL 329

Query: 65  KVDVDELMGVANELGVGALPSFQFFKNGKLVDKFVGARKDILHNTVSKH 114
           KVD+D+   VA    + ++P+F F ++GK VDK VGA K  L   +++H
Sbjct: 330 KVDIDKANDVAASWNISSVPTFCFIRDGKEVDKVVGADKGSLEQKIAQH 376

The following BLAST results are available for this feature:

BLAST of Lsi04G009300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29448	6.2e-31	53.15	Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1	[more]
Q43636	8.9e-30	53.15	Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1	[more]
Q39362	1.2e-29	54.13	Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1	[more]
P29449	2.2e-28	55.86	Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
Q39239	1.1e-27	53.21	Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2	[more]

BLAST of Lsi04G009300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DCH1	2.1e-50	86.96	Thioredoxin H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G...	[more]
A0A1S3CMM6	2.1e-50	86.96	thioredoxin H1-like OS=Cucumis melo OX=3656 GN=LOC103502660 PE=4 SV=1	[more]
A0A5A7U8S0	6.1e-50	86.84	Thioredoxin H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G...	[more]
A0A0A0KSB1	2.3e-49	86.09	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G190500...	[more]
A0A6J1CDG5	3.7e-47	83.48	thioredoxin H1-like OS=Momordica charantia OX=3673 GN=LOC111010214 PE=4 SV=1	[more]

BLAST of Lsi04G009300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893273.1	2.5e-53	89.47	thioredoxin H1-like [Benincasa hispida]	[more]
XP_008464900.1	4.4e-50	86.96	PREDICTED: thioredoxin H1-like [Cucumis melo] >TYK21273.1 thioredoxin H1-like [C...	[more]
KAA0051550.1	1.3e-49	86.84	thioredoxin H1-like [Cucumis melo var. makuwa]	[more]
XP_004149943.1	4.8e-49	86.09	thioredoxin H1 [Cucumis sativus] >KGN50606.1 hypothetical protein Csa_021443 [Cu...	[more]
XP_022139257.1	7.7e-47	83.48	thioredoxin H1-like [Momordica charantia]	[more]

BLAST of Lsi04G009300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51030.1	4.4e-32	53.15	thioredoxin H-type 1	[more]
AT1G19730.1	7.7e-29	53.21	Thioredoxin superfamily protein	[more]
AT1G45145.1	1.2e-26	43.36	thioredoxin H-type 5	[more]
AT5G42980.1	8.8e-25	45.13	thioredoxin 3	[more]
AT3G17880.1	1.2e-21	41.28	tetraticopeptide domain-containing thioredoxin	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 38..47 score: 64.83 coord: 79..90 score: 35.09 coord: 30..38 score: 53.52
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 2..115 e-value: 2.1E-36 score: 126.5
None	No IPR available	PANTHER	PTHR10438:SF431	THIOREDOXIN	coord: 1..113
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 1..113
None	No IPR available	CDD	cd02947	TRX_family	coord: 18..103 e-value: 6.82124E-34 score: 111.111
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 10..110 e-value: 2.2E-27 score: 95.1
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 1..115 score: 12.61434
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 31..49
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 4..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G009300.1	Lsi04G009300.1	mRNA