Lsi04G009290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G009290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Thioredoxin
Location	chr04: 9608199 .. 9609758 (-)
RNA-Seq Expression	Lsi04G009290
Synteny	Lsi04G009290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAAGTAATTTCATGTCACACTGTTGGCTCATGGAAGCAGCAGCTACTCAAAGCCAAACTATACAACAAGCTGGTATTAATCTTTACTTCAAACTTATCTCTGTCTTTAAATTTGATTAAATAATTGTCTTTTAATTTACATGAAAACCAATTCAAATTTGAATCCAATTTCTTCCACCTACAACCCTTGGCTATTCACTTTTTAAATGTGTTTTAAATTAAAATTAAATCCAAAATTTTGAAAAATTAAGGAACTGTTTGATAATATCTTTAGTTTTGATTTTTTATTTTTGAAATTAAACTTATAATCTCCACTTTTATTTCTAGTTTTCTATTTTTTAAATATGTTTGCCTCTCTTGAATTTTTTAGTCAGATTCGAAAAAACAAAAACTATCTTTTTTTTACTTTTCTAACATTTATCTAGCTTGATTTTTGAAAATATAAATAGTATTCAAATAACAAAATAAAAAAAACTTATGAGTGGAAGTAGTGTTTATAATTTAGCTTAATTTTCAAAAACAAAAAATCAAGTTTATAAAAACTACATCCACCTATAAGTTTTGTTATCCACTTTATACCAATATTTTAAAAAATCAAACCAAATAGTATGAAATTCTTGTTGTTTTTAAATTTTGACTAAAAATTCAAGTGTTTCTTCAGAAAGAAAGAAAGAAAAAAAAAAAAAAAAAACCATAGTATGTGTTGATGCAAAATATGAGTAGGGGAAACACACCTGACTCTCACGTGACATCATCATTTAAATTTTTAATTCAGGGAAGAGAGTACTTGCAAAACAAAGAAAAACGACTCTGATGCCTAAGTCAGTTAGAGAATTATAGAATAGGAAAGAAATCAGAAGTTTTAAGTTACTTTTAATGGAGTCATGATAATCTATTTTGTAGGGGATTTGACCTAGGGTTTTATTCTAACTCTACTGGGATTAGGATATGGGTTTCCTAATCCTTAGTAAGCTAGGATCAAATCTCATATTATTTTATATTATCTTATATTATCTCGATTTTTTACTTTATTCCATTAGGCTAAAATCCATTCCTCGAAGATATAAAATTTAAGAGAAAACAAGCCTATAAATTTAAAAAAAAAAAATAAAGAAGATAAAAAAACATAATGCTACCAAACGGAGCCAAAATTATTATTATTATGAAAGGAGACTAACAATTGTAGTATTCTGTATTTTGGTAGGTGGTTGTGAACTTTACAGCAGCATGGTGTGGCCCATGTCGTGCCATGGCTCCAATTCTTCAAGAGCTGTCGAAGAAAATGAGTAATGTTATATTCTTGAAAGTGGATATTGATGAACTCATGGTAAGTTAAAAAAATAAATAAATAAATAAATTATTCGATCATATGCTTTTGCAACCAGTGAAGTAATTTTGTTAAAATTGTGGTTTAGTTTTACAGAGTATTGCAAATGAGTATGGAGTAAGTTCCATTCCTTCATTTCAATTCATGAAGAATGGGAAGTTGGTGGACAAGTTCGTAGGTGCAAACAAAGATTTACTCCAAAACACTCTTTCCAAACATGTAGCCTAA

mRNA sequence

ATGGGCAAAGTGGTTGTGAACTTTACAGCAGCATGGTGTGGCCCATGTCGTGCCATGGCTCCAATTCTTCAAGAGCTGTCGAAGAAAATGAGTAATGTTATATTCTTGAAAGTGGATATTGATGAACTCATGAGTATTGCAAATGAGTATGGAGTAAGTTCCATTCCTTCATTTCAATTCATGAAGAATGGGAAGTTGGTGGACAAGTTCGTAGGTGCAAACAAAGATTTACTCCAAAACACTCTTTCCAAACATGTAGCCTAA

Coding sequence (CDS)

ATGGGCAAAGTGGTTGTGAACTTTACAGCAGCATGGTGTGGCCCATGTCGTGCCATGGCTCCAATTCTTCAAGAGCTGTCGAAGAAAATGAGTAATGTTATATTCTTGAAAGTGGATATTGATGAACTCATGAGTATTGCAAATGAGTATGGAGTAAGTTCCATTCCTTCATTTCAATTCATGAAGAATGGGAAGTTGGTGGACAAGTTCGTAGGTGCAAACAAAGATTTACTCCAAAACACTCTTTCCAAACATGTAGCCTAA

Protein sequence

MGKVVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKNGKLVDKFVGANKDLLQNTLSKHVA

Homology

[Close]

BLAST of Lsi04G009290 vs. ExPASy Swiss-Prot
Match: Q43636 (Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-26
Identity = 52/86 (60.47%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 2   GKVVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFM 61
           G +VV+FTA+WCGPCR +AP L EL+KK+ NV FLKVD+DEL ++A+E+ V S+P+F F+
Sbjct: 29  GLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFL 88

Query: 62  KNGKLVDKFVGANKDLLQNTLSKHVA 88
           K GK++DK VGA KD LQ T++KH+A
Sbjct: 89  KEGKIMDKVVGAKKDELQQTIAKHMA 114

[Close]

BLAST of Lsi04G009290 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.5e-25
Identity = 48/84 (57.14%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           VVV+FTA+WCGPCR +AP   +L+KK+ NV+FLKVD DEL S+A+++ + ++P+F F+K 
Sbjct: 31  VVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKE 90

Query: 64  GKLVDKFVGANKDLLQNTLSKHVA 88
           GK++DK VGA KD LQ+T++KH+A
Sbjct: 91  GKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Lsi04G009290 vs. ExPASy Swiss-Prot
Match: P29449 (Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-23
Identity = 49/84 (58.33%), Postives = 69/84 (82.14%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           VVV+FTA+WCGPCR +APIL +++KKM +VIFLKVD+DEL +++ E+ V ++P+F F+K+
Sbjct: 37  VVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKD 96

Query: 64  GKLVDKFVGANKDLLQNTLSKHVA 88
           GK VD+ VGA K+ LQ T+ KH A
Sbjct: 97  GKEVDRVVGAKKEELQQTIVKHAA 120

[Close]

BLAST of Lsi04G009290 vs. ExPASy Swiss-Prot
Match: Q07090 (Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-23
Identity = 47/84 (55.95%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           +VV+FTA+WCGPC+ +A    EL+KKM  V FLKVD+DEL S+A ++ V ++P+F F+K 
Sbjct: 30  IVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKE 89

Query: 64  GKLVDKFVGANKDLLQNTLSKHVA 88
           GK+VDK VGA KD LQ T++KH++
Sbjct: 90  GKIVDKVVGAKKDELQQTIAKHIS 113

[Close]

BLAST of Lsi04G009290 vs. ExPASy Swiss-Prot
Match: Q0D840 (Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.0e-22
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           V+++FTA+WCGPCR +AP+  E +KK    +FLKVD+DEL  +A +Y V ++P+F F+K+
Sbjct: 31  VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKD 90

Query: 64  GKLVDKFVGANKDLLQNTLSKHV 87
           G   DK VGA KD LQNT+ KHV
Sbjct: 91  GAEADKVVGARKDDLQNTIVKHV 113

[Close]

BLAST of Lsi04G009290 vs. ExPASy TrEMBL
Match: A0A6J1CBX5 (thioredoxin H1-like OS=Momordica charantia OX=3673 GN=LOC111010155 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 69/84 (82.14%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           VVV FTA WCGPCRAMAP+L++L+KK SNVIFLKVD+DELMS+ANE GV +IPSFQF KN
Sbjct: 65  VVVKFTATWCGPCRAMAPVLEDLAKKTSNVIFLKVDVDELMSVANELGVGAIPSFQFFKN 124

Query: 64  GKLVDKFVGANKDLLQNTLSKHVA 88
           GKLVDKFVGANKDLL+NTLSKH A
Sbjct: 125 GKLVDKFVGANKDLLRNTLSKHAA 148

[Close]

BLAST of Lsi04G009290 vs. ExPASy TrEMBL
Match: A0A0A0KLS7 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G190490 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.5e-32
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMS-NVIFLKVDIDELMSIANEYGVSSIPSFQFMK 63
           VVVNFTA+WCGPCR MAPIL+EL+KKMS NVIFLKVDIDELMSIA E+GVSS+PSFQF+K
Sbjct: 30  VVVNFTASWCGPCRFMAPILEELAKKMSNNVIFLKVDIDELMSIAKEFGVSSVPSFQFLK 89

Query: 64  NGKLVDKFVGANKDLLQNTLSKHVA 88
           NGKLVDKFVGA K LLQNT+SKH A
Sbjct: 90  NGKLVDKFVGAKKTLLQNTISKHSA 114

[Close]

BLAST of Lsi04G009290 vs. ExPASy TrEMBL
Match: A0A6J1CDG5 (thioredoxin H1-like OS=Momordica charantia OX=3673 GN=LOC111010214 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.7e-32
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           VVV FTA WCGPCRAMAP+L++L+KK SNVIFLKVD+DELM +ANE GV +IPSFQF KN
Sbjct: 30  VVVKFTATWCGPCRAMAPVLEDLAKKTSNVIFLKVDVDELMRVANELGVGAIPSFQFFKN 89

Query: 64  GKLVDKFVGANKDLLQNTLSKHVA 88
           GKLVDKFVGANKDLL NTLSKH A
Sbjct: 90  GKLVDKFVGANKDLLTNTLSKHAA 113

[Close]

BLAST of Lsi04G009290 vs. ExPASy TrEMBL
Match: A0A5A7U8S0 (Thioredoxin H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00820 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 71/85 (83.53%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMS-NVIFLKVDIDELMSIANEYGVSSIPSFQFMK 63
           VVVNFTA+WCGPCR MAPIL+EL+KKMS NVIFLKVDIDELMSIA E+GVSS+PSFQF+K
Sbjct: 114 VVVNFTASWCGPCRFMAPILEELAKKMSNNVIFLKVDIDELMSIAKEFGVSSVPSFQFLK 173

Query: 64  NGKLVDKFVGANKDLLQNTLSKHVA 88
           NGKLVDKFVGA K+LLQ+T+SKH A
Sbjct: 174 NGKLVDKFVGAKKNLLQSTISKHSA 198

[Close]

BLAST of Lsi04G009290 vs. ExPASy TrEMBL
Match: A0A1S3CMJ1 (thioredoxin H-type-like OS=Cucumis melo OX=3656 GN=LOC103502659 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 71/85 (83.53%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMS-NVIFLKVDIDELMSIANEYGVSSIPSFQFMK 63
           VVVNFTA+WCGPCR MAPIL+EL+KKMS NVIFLKVDIDELMSIA E+GVSS+PSFQF+K
Sbjct: 30  VVVNFTASWCGPCRFMAPILEELAKKMSNNVIFLKVDIDELMSIAKEFGVSSVPSFQFLK 89

Query: 64  NGKLVDKFVGANKDLLQNTLSKHVA 88
           NGKLVDKFVGA K+LLQ+T+SKH A
Sbjct: 90  NGKLVDKFVGAKKNLLQSTISKHSA 114

[Close]

BLAST of Lsi04G009290 vs. NCBI nr
Match: XP_038893093.1 (thioredoxin H1-like [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 3.1e-32
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           VVVNFTA WCGPCRAMAPI++ELSKKMSNVIFLKVDIDELMSIA E GVSSIPSFQF+KN
Sbjct: 30  VVVNFTATWCGPCRAMAPIVEELSKKMSNVIFLKVDIDELMSIAKELGVSSIPSFQFIKN 89

Query: 64  GKLVDKFVGANKDLLQNTLSKHVA 88
           GK+VDKFVGA KDLL++T++KH A
Sbjct: 90  GKVVDKFVGAKKDLLKSTVAKHAA 113

[Close]

BLAST of Lsi04G009290 vs. NCBI nr
Match: XP_022139186.1 (thioredoxin H1-like [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 3.1e-32
Identity = 69/84 (82.14%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           VVV FTA WCGPCRAMAP+L++L+KK SNVIFLKVD+DELMS+ANE GV +IPSFQF KN
Sbjct: 65  VVVKFTATWCGPCRAMAPVLEDLAKKTSNVIFLKVDVDELMSVANELGVGAIPSFQFFKN 124

Query: 64  GKLVDKFVGANKDLLQNTLSKHVA 88
           GKLVDKFVGANKDLL+NTLSKH A
Sbjct: 125 GKLVDKFVGANKDLLRNTLSKHAA 148

[Close]

BLAST of Lsi04G009290 vs. NCBI nr
Match: XP_004149944.1 (thioredoxin H-type [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMS-NVIFLKVDIDELMSIANEYGVSSIPSFQFMK 63
           VVVNFTA+WCGPCR MAPIL+EL+KKMS NVIFLKVDIDELMSIA E+GVSS+PSFQF+K
Sbjct: 30  VVVNFTASWCGPCRFMAPILEELAKKMSNNVIFLKVDIDELMSIAKEFGVSSVPSFQFLK 89

Query: 64  NGKLVDKFVGANKDLLQNTLSKHVA 88
           NGKLVDKFVGA K LLQNT+SKH A
Sbjct: 90  NGKLVDKFVGAKKTLLQNTISKHSA 114

[Close]

BLAST of Lsi04G009290 vs. NCBI nr
Match: KAE8648009.1 (hypothetical protein Csa_021401 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMS-NVIFLKVDIDELMSIANEYGVSSIPSFQFMK 63
           VVVNFTA+WCGPCR MAPIL+EL+KKMS NVIFLKVDIDELMSIA E+GVSS+PSFQF+K
Sbjct: 57  VVVNFTASWCGPCRFMAPILEELAKKMSNNVIFLKVDIDELMSIAKEFGVSSVPSFQFLK 116

Query: 64  NGKLVDKFVGANKDLLQNTLSKHVA 88
           NGKLVDKFVGA K LLQNT+SKH A
Sbjct: 117 NGKLVDKFVGAKKTLLQNTISKHSA 141

[Close]

BLAST of Lsi04G009290 vs. NCBI nr
Match: XP_022139257.1 (thioredoxin H1-like [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-31
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           VVV FTA WCGPCRAMAP+L++L+KK SNVIFLKVD+DELM +ANE GV +IPSFQF KN
Sbjct: 30  VVVKFTATWCGPCRAMAPVLEDLAKKTSNVIFLKVDVDELMRVANELGVGAIPSFQFFKN 89

Query: 64  GKLVDKFVGANKDLLQNTLSKHVA 88
           GKLVDKFVGANKDLL NTLSKH A
Sbjct: 90  GKLVDKFVGANKDLLTNTLSKHAA 113

[Close]

BLAST of Lsi04G009290 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 114.0 bits (284), Expect = 6.0e-26
Identity = 48/84 (57.14%), Postives = 70/84 (83.33%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           VVV+FTA+WCGPCR +AP   +L+KK+ NV+FLKVD DEL S+A+++ + ++P+F F+K 
Sbjct: 31  VVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKE 90

Query: 64  GKLVDKFVGANKDLLQNTLSKHVA 88
           GK++DK VGA KD LQ+T++KH+A
Sbjct: 91  GKILDKVVGAKKDELQSTIAKHLA 114

[Close]

BLAST of Lsi04G009290 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 6.3e-23
Identity = 47/83 (56.63%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKK-MSNVIFLKVDIDELMSIANEYGVSSIPSFQFMK 63
           +V++FTA+WC PCR +API  +L+KK MS+ IF KVD+DEL S+A E+GV ++P+F F+K
Sbjct: 31  IVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIK 90

Query: 64  NGKLVDKFVGANKDLLQNTLSKH 86
            G++VDK VGANK+ LQ  + KH
Sbjct: 91  AGEVVDKLVGANKEDLQAKIVKH 113

[Close]

BLAST of Lsi04G009290 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 )

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-22
Identity = 40/82 (48.78%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           +V++FTA+WC PCR +AP+  E++KK +NV+F K+D+DEL ++A E+ V ++P+F FMK 
Sbjct: 30  IVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKE 89

Query: 64  GKLVDKFVGANKDLLQNTLSKH 86
           G ++D+ VGA KD +   L KH
Sbjct: 90  GNIIDRVVGAAKDEINEKLMKH 111

[Close]

BLAST of Lsi04G009290 vs. TAIR 10
Match: AT3G17880.1 (tetraticopeptide domain-containing thioredoxin )

HSP 1 Score: 90.5 bits (223), Expect = 7.2e-19
Identity = 38/82 (46.34%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           +++ FTA WCGPCR M+P+   L+ + S V+FLKVDID+   +A  + +SS+P+F F+++
Sbjct: 295 LILYFTATWCGPCRYMSPLYSNLATQHSRVVFLKVDIDKANDVAASWNISSVPTFCFIRD 354

Query: 64  GKLVDKFVGANKDLLQNTLSKH 86
           GK VDK VGA+K  L+  +++H
Sbjct: 355 GKEVDKVVGADKGSLEQKIAQH 376

[Close]

BLAST of Lsi04G009290 vs. TAIR 10
Match: AT3G17880.2 (tetraticopeptide domain-containing thioredoxin )

HSP 1 Score: 90.5 bits (223), Expect = 7.2e-19
Identity = 38/82 (46.34%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 4   VVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKN 63
           +++ FTA WCGPCR M+P+   L+ + S V+FLKVDID+   +A  + +SS+P+F F+++
Sbjct: 288 LILYFTATWCGPCRYMSPLYSNLATQHSRVVFLKVDIDKANDVAASWNISSVPTFCFIRD 347

Query: 64  GKLVDKFVGANKDLLQNTLSKH 86
           GK VDK VGA+K  L+  +++H
Sbjct: 348 GKEVDKVVGADKGSLEQKIAQH 369

The following BLAST results are available for this feature:

BLAST of Lsi04G009290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43636	1.6e-26	60.47	Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1	[more]
P29448	8.5e-25	57.14	Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1	[more]
P29449	1.6e-23	58.33	Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
Q07090	1.6e-23	55.95	Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1	[more]
Q0D840	3.0e-22	54.22	Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1	[more]

BLAST of Lsi04G009290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBX5	1.5e-32	82.14	thioredoxin H1-like OS=Momordica charantia OX=3673 GN=LOC111010155 PE=4 SV=1	[more]
A0A0A0KLS7	7.5e-32	84.71	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G190490...	[more]
A0A6J1CDG5	9.7e-32	80.95	thioredoxin H1-like OS=Momordica charantia OX=3673 GN=LOC111010214 PE=4 SV=1	[more]
A0A5A7U8S0	1.7e-31	83.53	Thioredoxin H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G...	[more]
A0A1S3CMJ1	1.7e-31	83.53	thioredoxin H-type-like OS=Cucumis melo OX=3656 GN=LOC103502659 PE=4 SV=1	[more]

BLAST of Lsi04G009290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893093.1	3.1e-32	84.52	thioredoxin H1-like [Benincasa hispida]	[more]
XP_022139186.1	3.1e-32	82.14	thioredoxin H1-like [Momordica charantia]	[more]
XP_004149944.1	1.5e-31	84.71	thioredoxin H-type [Cucumis sativus]	[more]
KAE8648009.1	1.5e-31	84.71	hypothetical protein Csa_021401 [Cucumis sativus]	[more]
XP_022139257.1	2.0e-31	80.95	thioredoxin H1-like [Momordica charantia]	[more]

BLAST of Lsi04G009290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51030.1	6.0e-26	57.14	thioredoxin H-type 1	[more]
AT1G19730.1	6.3e-23	56.63	Thioredoxin superfamily protein	[more]
AT1G45145.1	3.1e-22	48.78	thioredoxin H-type 5	[more]
AT3G17880.1	7.2e-19	46.34	tetraticopeptide domain-containing thioredoxin	[more]
AT3G17880.2	7.2e-19	46.34	tetraticopeptide domain-containing thioredoxin	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 4..12 score: 52.22 coord: 51..62 score: 34.03 coord: 12..21 score: 64.83
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 2..87 e-value: 2.4E-32 score: 113.4
None	No IPR available	PANTHER	PTHR10438:SF431	THIOREDOXIN	coord: 4..85
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 4..85
None	No IPR available	CDD	cd02947	TRX_family	coord: 2..75 e-value: 7.57179E-36 score: 114.963
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 3..83 e-value: 3.3E-26 score: 91.2
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 1..87 score: 11.416391
IPR005746	Thioredoxin	PIRSF	PIRSF000077	Thioredoxin	coord: 1..86 e-value: 6.7E-28 score: 94.7
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 5..23
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 4..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G009290.1	Lsi04G009290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006662	glycerol ether metabolic process
molecular_function	GO:0015035	protein-disulfide reductase activity