Lsi04G009260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G009260
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEncodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich).
Locationchr04: 9516938 .. 9518875 (+)
RNA-Seq ExpressionLsi04G009260
SyntenyLsi04G009260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTGTGTGTCTGAAATCTTCACGTGGGTCTGCTCCATCTCTTTCTGTTTCTGTCTGCATATTATCTGTTTGTTTTTTAGTCTGACTGGAAAACCTTATCGAGTTTTCTCTTCTTTTGTTTTGTTTTGTTTTTCTTTTTCTTTATATGGGTCTGGGCCGTTAAGAGATAACTATCAGGTTTAGGGAGTAGTTTTGTTCGTTGGCTGACAGAGAAAGCTCCCACTGTTAGGTACTATGGAGAACAAGAAGCAAGTGGCTACCTCTTCATCTTCAAGTTTGGATCATATTTTTGGTCCCATGGACTCAAATTCAGCTTCTTCAACATCCACAACTGGTTATTTTGGCTCTATTTTCCCACCACCGGTTGGTACTTCAATTCATTTTTAATATCTCCCTTTCATGCTCTATCTCTCTCTTTTTCTCTTTAGATGTGGGTTTCCTGAACTAGGTCATTTTCATTGAGTTGCTTGTTGATTTTGCATGTTTCAAGTTGATGATATGACAGCTTAACATTAGGCAGAATTGGAATAAGAAAGCTTCTTAGTTAGGGAATCAAAGTAATGGAAGCTTAGTTTCTTTCTAATGGAGATACAAAGTACTTGTTAAAGGGAAGTAGGGAACCCAAAAATGGTCCTGTTTTGTGCTGTTCTATATGAAAATTTTTGTGGGATTTAAAAGCGTACATTGAACTTTTTCTCTGATTTTAGGTGGTGGAGAGAGAGAGAAAAAAGGATGTTGGAAATCAAGTTAGCACTGGCGAAGTTGGGAATCCAGGTTTTTCTATCCTTCTAAAACTTGAACTTGAACACACCTACCTCATAAAGGATAAGAAGCCTATGTCTAACCTACCTAATCTCTCATGATTTTCACTATTGAATAGTTTTTCAAATGATATAAACTTCTCCATTTATGTAAAACTGGCTTTTTTTCCTCTCAGCTAATGCTTCTGTAAATGGCAAAAAAGAAACTGGTGGTGGAAATGGGAAAGATGAAAGCTCCATTTATCAGAATGAAACTATGGAACCAAGTTACTTTAGTTCTTCCATCTTTTATGGTGGCCAAGAAAATTACTCCCCAAGAACCAATGCCTCACAATCCCATCATAATGTAAGCATTTTAAAATGTTCATGTGCCACCTTTCTTGTAGTTTTCTTTAGTCCCTATACTTATGAGATCGAAGAAAAACAAATATAATCACACAAAACGGGGCTACAAATCTATAGGAAAAAGATAAACATGTTCCTATCAAGATGTGAAAAAAAAATTGTTTTTTGTTCAATCATAGCATCATCGGTCACCGCTCTTGAGTTATAATCTACTTCAAATGTCGAGATTTAGCCTTCATACTTTCAATAAATCTTAAAGCCAGTCCCTACCTTTGGTTCATGACTAATTTTTCCAAAAACATAATTAGTCTCCGTCAACCTTCCTTCTCTAAATTTTGAAATCATATTCGCACTGTGTCTTTTCTGAAATGTTGGAATGAAAATTTGATTACTATTTTCCCAAGTTAGATCAAAATTAACTTTAAACTAACCATGATGACTAAATTTAAGATTTGTTGAAAGTGCAGACTAAATTTATGTTCAAAAGTATAGGGACTAAAATGAAACTAATCTCAAGGTGTATTTTAGCAAAGGGTATTTTTTTTCTTTGGGGATCTTAATAGACATATGAAAAGATCTGATAATGATGCGATATTGCTTTGGAAAGTGATACTGTTGTGTTCATTACTTGATGATACATACTGATGTTATGAAAACCTTCATCAGTTTAAGAAAGAAGGGAAAGACAACGATGCAAATGAAAGCAATTCAAACTCTGCTTCAAGAGGAAACTGGTGGAAAGGTATGACAACTTCCATGGATTTATTGTTTGACAAAGAAGAGTTGCTGATGATGTTAAGACAATTTTTTTTAAACTCACAATCTGTTTTC

mRNA sequence

GTCTTGTGTGTCTGAAATCTTCACGTGGGTCTGCTCCATCTCTTTCTGTTTCTGTCTGCATATTATCTAGAAAGCTCCCACTGTTAGGTACTATGGAGAACAAGAAGCAAGTGGCTACCTCTTCATCTTCAAGTTTGGATCATATTTTTGGTCCCATGGACTCAAATTCAGCTTCTTCAACATCCACAACTGGTTATTTTGGCTCTATTTTCCCACCACCGGTGGTGGAGAGAGAGAGAAAAAAGGATGTTGGAAATCAAGTTAGCACTGGCGAAGTTGGGAATCCAGCTAATGCTTCTGTAAATGGCAAAAAAGAAACTGGTGGTGGAAATGGGAAAGATGAAAGCTCCATTTATCAGAATGAAACTATGGAACCAAGTTACTTTAGTTCTTCCATCTTTTATGGTGGCCAAGAAAATTACTCCCCAAGAACCAATGCCTCACAATCCCATCATAATTTTAAGAAAGAAGGGAAAGACAACGATGCAAATGAAAGCAATTCAAACTCTGCTTCAAGAGGAAACTGGTGGAAAGGTATGACAACTTCCATGGATTTATTGTTTGACAAAGAAGAGTTGCTGATGATGTTAAGACAATTTTTTTTAAACTCACAATCTGTTTTC

Coding sequence (CDS)

ATGGAGAACAAGAAGCAAGTGGCTACCTCTTCATCTTCAAGTTTGGATCATATTTTTGGTCCCATGGACTCAAATTCAGCTTCTTCAACATCCACAACTGGTTATTTTGGCTCTATTTTCCCACCACCGGTGGTGGAGAGAGAGAGAAAAAAGGATGTTGGAAATCAAGTTAGCACTGGCGAAGTTGGGAATCCAGCTAATGCTTCTGTAAATGGCAAAAAAGAAACTGGTGGTGGAAATGGGAAAGATGAAAGCTCCATTTATCAGAATGAAACTATGGAACCAAGTTACTTTAGTTCTTCCATCTTTTATGGTGGCCAAGAAAATTACTCCCCAAGAACCAATGCCTCACAATCCCATCATAATTTTAAGAAAGAAGGGAAAGACAACGATGCAAATGAAAGCAATTCAAACTCTGCTTCAAGAGGAAACTGGTGGAAAGGTATGACAACTTCCATGGATTTATTGTTTGACAAAGAAGAGTTGCTGATGATGTTAAGACAATTTTTTTTAAACTCACAATCTGTTTTC

Protein sequence

MENKKQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVSTGEVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQSHHNFKKEGKDNDANESNSNSASRGNWWKGMTTSMDLLFDKEELLMMLRQFFLNSQSVF
Homology
[Close]
BLAST of Lsi04G009260 vs. ExPASy TrEMBL
Match: A0A5A7U8T9 (TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00020 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.5e-66
Identity = 137/151 (90.73%), Postives = 143/151 (94.70%), Query Frame = 0 

Query: 1   MENKK-QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVST 60
           ME+KK QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGS+FPPPVVERERKKDVGNQVST
Sbjct: 1   MESKKLQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSMFPPPVVERERKKDVGNQVST 60

Query: 61  GEVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120
            EVGNP NA++NGKK TG  +GKDESS+YQNETMEPSYFSSSIFYGGQENYSPRTNASQS
Sbjct: 61  AEVGNPDNATINGKKGTGDASGKDESSMYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHNFKKEGKDNDANESNSNSASRGNWWKGMT 151
           H NFKKEGKDNDANESNSN ASRGNWWKGMT
Sbjct: 121 HPNFKKEGKDNDANESNSNPASRGNWWKGMT 151

[Close]
BLAST of Lsi04G009260 vs. ExPASy TrEMBL
Match: A0A1S4E4X0 (uncharacterized protein LOC103502653 OS=Cucumis melo OX=3656 GN=LOC103502653 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.1e-65
Identity = 135/149 (90.60%), Postives = 141/149 (94.63%), Query Frame = 0 

Query: 1   MENKK-QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVST 60
           ME+KK QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGS+FPPPVVERERKKDVGNQVST
Sbjct: 1   MESKKLQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSMFPPPVVERERKKDVGNQVST 60

Query: 61  GEVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120
            EVGNP NA++NGKK TG  +GKDESS+YQNETMEPSYFSSSIFYGGQENYSPRTNASQS
Sbjct: 61  AEVGNPDNATINGKKGTGDASGKDESSMYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHNFKKEGKDNDANESNSNSASRGNWWKG 149
           H NFKKEGKDNDANESNSN ASRGNWWKG
Sbjct: 121 HPNFKKEGKDNDANESNSNPASRGNWWKG 149

[Close]
BLAST of Lsi04G009260 vs. ExPASy TrEMBL
Match: A0A0A0KNZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G188900 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.3e-64
Identity = 134/148 (90.54%), Postives = 139/148 (93.92%), Query Frame = 0 

Query: 1   MENKK-QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVST 60
           MENKK QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGS+FPPPVVERERKKDVGNQVS 
Sbjct: 1   MENKKLQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSMFPPPVVERERKKDVGNQVSI 60

Query: 61  GEVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120
            EVGNP NA++NGKK TGG +GKDESS+YQNETMEPSYFSSSIFYGGQENYSPRTNASQS
Sbjct: 61  AEVGNPDNATINGKKGTGGASGKDESSMYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHNFKKEGKDNDANESNSNSASRGNWWK 148
           H NFKKE KDNDANESNSN ASRGNWWK
Sbjct: 121 HPNFKKEVKDNDANESNSNPASRGNWWK 148

[Close]
BLAST of Lsi04G009260 vs. ExPASy TrEMBL
Match: A0A6J1CC52 (uncharacterized protein LOC111010132 OS=Momordica charantia OX=3673 GN=LOC111010132 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.6e-57
Identity = 119/148 (80.41%), Postives = 128/148 (86.49%), Query Frame = 0 

Query: 1   MENKKQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVSTG 60
           ME KKQVA SSSSSLDH+FGPMDSNSASSTST GYFGSIFPPPVVERERK+DVGN+  T 
Sbjct: 1   MEXKKQVAASSSSSLDHLFGPMDSNSASSTSTAGYFGSIFPPPVVERERKQDVGNRXGTC 60

Query: 61  EVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQSH 120
            VGNP NAS+NGK  TGG  GKD SS+YQNETM PSYFSSSI YGGQENYSPRT AS+SH
Sbjct: 61  NVGNPDNASLNGKNGTGGATGKDASSMYQNETMGPSYFSSSILYGGQENYSPRTKASESH 120

Query: 121 HNFKKEGKDNDANESNSNSASRGNWWKG 149
           HNFKKEGKD++ N  N NSASRGNWW+G
Sbjct: 121 HNFKKEGKDDEVNGGNPNSASRGNWWEG 148

[Close]
BLAST of Lsi04G009260 vs. ExPASy TrEMBL
Match: A0A6J1FNY5 (uncharacterized protein LOC111447180 OS=Cucurbita moschata OX=3662 GN=LOC111447180 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 9.5e-50
Identity = 116/151 (76.82%), Postives = 125/151 (82.78%), Query Frame = 0 

Query: 1   MENKKQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVSTG 60
           MENKKQVA SSSS+ D +FGPMDSNSASSTSTTGYFGSIFP  VVERE+ +DVG     G
Sbjct: 1   MENKKQVAASSSSTSDLLFGPMDSNSASSTSTTGYFGSIFPQLVVEREKNQDVG----PG 60

Query: 61  EVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQSH 120
           +VGNP NASVNG   TGG NGK ESSIY NETMEPSYFSSSIFYGGQENYSPRT  S+SH
Sbjct: 61  KVGNPVNASVNGMNGTGGANGKGESSIYLNETMEPSYFSSSIFYGGQENYSPRTKLSESH 120

Query: 121 HNFKKEGKDNDANESNSNSASRGNWWKGMTT 152
           HNFKKE +DNDA  SNSNSASRGNW+  + T
Sbjct: 121 HNFKKE-EDNDAIGSNSNSASRGNWFSLLLT 146

[Close]
BLAST of Lsi04G009260 vs. NCBI nr
Match: XP_038892195.1 (uncharacterized protein LOC120081420 isoform X1 [Benincasa hispida])

HSP 1 Score: 295.0 bits (754), Expect = 4.2e-76
Identity = 154/170 (90.59%), Postives = 160/170 (94.12%), Query Frame = 0 

Query: 1   MENKK-QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVST 60
           MENKK QVATSSSSSLDHIFGP+DSNSASSTSTTGYFGSIFPPPVVER RKKDVGNQVS+
Sbjct: 1   MENKKLQVATSSSSSLDHIFGPVDSNSASSTSTTGYFGSIFPPPVVERARKKDVGNQVSS 60

Query: 61  GEVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120
           GE+GNP NAS+NGKK T G NGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS
Sbjct: 61  GELGNPDNASINGKKGTAGANGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHNFKKEGKDNDANESNSNSASRGNWWKGMTTSMDLLFDKEELLMMLRQF 170
           HHNFKKEGKDNDANESNSNS SRGNWWKGMTTSMDLLFDKEE+LM+   F
Sbjct: 121 HHNFKKEGKDNDANESNSNSVSRGNWWKGMTTSMDLLFDKEEVLMVKTNF 170

[Close]
BLAST of Lsi04G009260 vs. NCBI nr
Match: XP_038892196.1 (uncharacterized protein LOC120081420 isoform X2 [Benincasa hispida])

HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67
Identity = 138/149 (92.62%), Postives = 142/149 (95.30%), Query Frame = 0 

Query: 1   MENKK-QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVST 60
           MENKK QVATSSSSSLDHIFGP+DSNSASSTSTTGYFGSIFPPPVVER RKKDVGNQVS+
Sbjct: 1   MENKKLQVATSSSSSLDHIFGPVDSNSASSTSTTGYFGSIFPPPVVERARKKDVGNQVSS 60

Query: 61  GEVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120
           GE+GNP NAS+NGKK T G NGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS
Sbjct: 61  GELGNPDNASINGKKGTAGANGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHNFKKEGKDNDANESNSNSASRGNWWKG 149
           HHNFKKEGKDNDANESNSNS SRGNWWKG
Sbjct: 121 HHNFKKEGKDNDANESNSNSVSRGNWWKG 149

[Close]
BLAST of Lsi04G009260 vs. NCBI nr
Match: KAA0051570.1 (TPRXL protein [Cucumis melo var. makuwa] >TYK21253.1 TPRXL protein [Cucumis melo var. makuwa])

HSP 1 Score: 262.3 bits (669), Expect = 3.0e-66
Identity = 137/151 (90.73%), Postives = 143/151 (94.70%), Query Frame = 0 

Query: 1   MENKK-QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVST 60
           ME+KK QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGS+FPPPVVERERKKDVGNQVST
Sbjct: 1   MESKKLQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSMFPPPVVERERKKDVGNQVST 60

Query: 61  GEVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120
            EVGNP NA++NGKK TG  +GKDESS+YQNETMEPSYFSSSIFYGGQENYSPRTNASQS
Sbjct: 61  AEVGNPDNATINGKKGTGDASGKDESSMYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHNFKKEGKDNDANESNSNSASRGNWWKGMT 151
           H NFKKEGKDNDANESNSN ASRGNWWKGMT
Sbjct: 121 HPNFKKEGKDNDANESNSNPASRGNWWKGMT 151

[Close]
BLAST of Lsi04G009260 vs. NCBI nr
Match: XP_008464894.1 (PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903275.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903276.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903277.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903278.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 4.3e-65
Identity = 135/149 (90.60%), Postives = 141/149 (94.63%), Query Frame = 0 

Query: 1   MENKK-QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVST 60
           ME+KK QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGS+FPPPVVERERKKDVGNQVST
Sbjct: 1   MESKKLQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSMFPPPVVERERKKDVGNQVST 60

Query: 61  GEVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120
            EVGNP NA++NGKK TG  +GKDESS+YQNETMEPSYFSSSIFYGGQENYSPRTNASQS
Sbjct: 61  AEVGNPDNATINGKKGTGDASGKDESSMYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHNFKKEGKDNDANESNSNSASRGNWWKG 149
           H NFKKEGKDNDANESNSN ASRGNWWKG
Sbjct: 121 HPNFKKEGKDNDANESNSNPASRGNWWKG 149

[Close]
BLAST of Lsi04G009260 vs. NCBI nr
Match: XP_011654971.1 (uncharacterized protein LOC105435461 [Cucumis sativus] >XP_011654972.1 uncharacterized protein LOC105435461 [Cucumis sativus] >XP_031740891.1 uncharacterized protein LOC105435461 [Cucumis sativus] >KGN50124.2 hypothetical protein Csa_021414 [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 9.7e-65
Identity = 135/149 (90.60%), Postives = 140/149 (93.96%), Query Frame = 0 

Query: 1   MENKK-QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVST 60
           MENKK QVATSSSSSLDHIFGPMDSNSASSTSTTGYFGS+FPPPVVERERKKDVGNQVS 
Sbjct: 1   MENKKLQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSMFPPPVVERERKKDVGNQVSI 60

Query: 61  GEVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120
            EVGNP NA++NGKK TGG +GKDESS+YQNETMEPSYFSSSIFYGGQENYSPRTNASQS
Sbjct: 61  AEVGNPDNATINGKKGTGGASGKDESSMYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHNFKKEGKDNDANESNSNSASRGNWWKG 149
           H NFKKE KDNDANESNSN ASRGNWWKG
Sbjct: 121 HPNFKKEVKDNDANESNSNPASRGNWWKG 149

[Close]
BLAST of Lsi04G009260 vs. TAIR 10
Match: AT3G55646.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39855.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-19
Identity = 67/153 (43.79%), Postives = 91/153 (59.48%), Query Frame = 0 

Query: 2   ENKKQVATSSS-----SSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQ 61
           +NKK++ ++SS     SS DHIFGP  S S+SS+S TG F SIFPPP  ++     +G Q
Sbjct: 5   KNKKKIVSASSSSSSLSSFDHIFGPRVS-SSSSSSATGLFKSIFPPPSADQ-----LGRQ 64

Query: 62  VS-TGEVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTN 121
           V    + G+    S N K E    N K++ S Y  ET  P + SSS++YGGQE YS  T 
Sbjct: 65  VDFASQGGHVKYQSPNAKGER--SNKKEKKSYYNEETEPPCHLSSSLYYGGQETYSSTT- 124

Query: 122 ASQSHHNFKKEGKDNDANESNSNSASRGNWWKG 149
            + +H  +KK+G++ D     S  ASRGNWW+G
Sbjct: 125 -TTTHDTYKKDGEEGD-----SKRASRGNWWEG 142

[Close]
BLAST of Lsi04G009260 vs. TAIR 10
Match: AT2G39855.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55646.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-17
Identity = 68/152 (44.74%), Postives = 84/152 (55.26%), Query Frame = 0 

Query: 1   MENKKQV---ATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQV 60
           M+ KK V   ++SSSSSLDHIFGP  S+S SS STTG F SIFPPP    +     GN  
Sbjct: 1   MDKKKSVSGSSSSSSSSLDHIFGPRVSHSYSS-STTGLFKSIFPPPSAVTQ-----GNLT 60

Query: 61  STGEVGNPANASVNGKKETGGGNGKDESSIYQN-ETMEPSYFSSSIFYGGQENYSPRTNA 120
           S          +     E G  +   E   YQ+ ET  P   SSSI+YGGQ+NYS  T  
Sbjct: 61  SRNGAAKYQPTNFETPNERGERSKNKERKSYQSEETQPPCNLSSSIYYGGQDNYSSSTTN 120

Query: 121 SQSHHNFKKEGKDNDANESNSNSASRGNWWKG 149
             +   +KK+G++ D     S SASRGNWW+G
Sbjct: 121 PDA---YKKDGEEGD-----SESASRGNWWEG 138

[Close]
BLAST of Lsi04G009260 vs. TAIR 10
Match: AT5G05965.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39855.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 72.0 bits (175), Expect = 5.4e-13
Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 0 

Query: 1   MENKKQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQVSTG 60
           ++  K  ++S SSS D++FGP  S SASS ST     SIFPPPV    RKK  G+  +  
Sbjct: 3   IKKTKAASSSHSSSFDNLFGPKGSASASSCST--ILDSIFPPPVA---RKK--GSHTAPE 62

Query: 61  EVGNPANASVNGKKETGGGNGKDESSIYQNETMEPSYFSSSIFYGGQENYS-PRTNASQS 120
             GN + A+             DE S   +E  E SY+SSSI+YGGQ++YS PRT+ S +
Sbjct: 63  VQGNISQAT-------------DERS--SHEKRESSYYSSSIYYGGQQHYSPPRTDGSST 122

Query: 121 HHNFKKEGKDNDANESNSNSASRGNWWKG 149
             +   + K+ +     + S SRGNWWKG
Sbjct: 123 SPS--HQPKETNDRTDITTSTSRGNWWKG 127

[Close]
BLAST of Lsi04G009260 vs. TAIR 10
Match: AT2G39855.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55646.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-12
Identity = 54/118 (45.76%), Postives = 64/118 (54.24%), Query Frame = 0 

Query: 1   MENKKQV---ATSSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPPVVERERKKDVGNQV 60
           M+ KK V   ++SSSSSLDHIFGP  S+S SS STTG F SIFPPP    +     GN  
Sbjct: 1   MDKKKSVSGSSSSSSSSLDHIFGPRVSHSYSS-STTGLFKSIFPPPSAVTQ-----GNLT 60

Query: 61  STGEVGNPANASVNGKKETGGGNGKDESSIYQN-ETMEPSYFSSSIFYGGQENYSPRT 115
           S          +     E G  +   E   YQ+ ET  P   SSSI+YGGQ+NYS  T
Sbjct: 61  SRNGAAKYQPTNFETPNERGERSKNKERKSYQSEETQPPCNLSSSIYYGGQDNYSSST 112

[Close]
BLAST of Lsi04G009260 vs. TAIR 10
Match: AT5G02020.1 (Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich). )

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-11
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 0 

Query: 1   MENKKQVAT-----SSSSSLDHIFGPMDSNSASSTSTTGYFGSIFPPP--VVERERKKDV 60
           ME +K+ A+     SSSS    +FG  +  + SS S++G  GSIFPPP  V+ RE    V
Sbjct: 1   MEGRKKKASSSSPCSSSSLTSELFGSRE--NPSSPSSSGILGSIFPPPSKVLGRE---SV 60

Query: 61  GNQVSTGEVGNPANASVNGKKETGGGNGKDESSIY-QNETMEPSYFSSSIFYGGQENYSP 120
             +  TG   N   +   G  +      ++  S Y Q++ ++P + SSSI+YGG + Y  
Sbjct: 61  RQETVTGGCWNEKTSKTGGNVDRNREQQENHGSGYQQDQRVQPCHLSSSIYYGGPDVYFQ 120

Query: 121 RTNASQSHHNFKKEGKDNDANESNSNSASRGNWWKG 149
             N++ +  N K      D  E +S SASRGNWW+G
Sbjct: 121 PQNSTSNSTNKK------DGGEDDSGSASRGNWWQG 145

The following BLAST results are available for this feature:
BLAST of Lsi04G009260 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G009260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U8T91.5e-6690.73TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00020 ... [more]
A0A1S4E4X02.1e-6590.60uncharacterized protein LOC103502653 OS=Cucumis melo OX=3656 GN=LOC103502653 PE=... [more]
A0A0A0KNZ92.3e-6490.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G188900 PE=4 SV=1[more]
A0A6J1CC521.6e-5780.41uncharacterized protein LOC111010132 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A6J1FNY59.5e-5076.82uncharacterized protein LOC111447180 OS=Cucurbita moschata OX=3662 GN=LOC1114471... [more]
BLAST of Lsi04G009260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038892195.14.2e-7690.59uncharacterized protein LOC120081420 isoform X1 [Benincasa hispida][more]
XP_038892196.12.1e-6792.62uncharacterized protein LOC120081420 isoform X2 [Benincasa hispida][more]
KAA0051570.13.0e-6690.73TPRXL protein [Cucumis melo var. makuwa] >TYK21253.1 TPRXL protein [Cucumis melo... [more]
XP_008464894.14.3e-6590.60PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903275.1 P... [more]
XP_011654971.19.7e-6590.60uncharacterized protein LOC105435461 [Cucumis sativus] >XP_011654972.1 uncharact... [more]
BLAST of Lsi04G009260 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G55646.12.9e-1943.79unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G39855.21.2e-1744.74unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G05965.15.4e-1340.94unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G39855.14.5e-1245.76unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G02020.15.0e-1135.90Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine ric... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availablePANTHERPTHR33738:SF21PLANT/PROTEIN-RELATEDcoord: 1..149
NoneNo IPR availablePANTHERPTHR33738EMB|CAB82975.1coord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G009260.1Lsi04G009260.1mRNA