Lsi04G008810 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G008810
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 8667275 .. 8668243 (-)
RNA-Seq ExpressionLsi04G008810
SyntenyLsi04G008810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGAAAACCGGGAGGTGGTGTGGTTAAGAGGCACAACGGACGCGTTCTCGTGGATCCAGTCTGTGTTGCCTTCCTTCAACATCCAACGGTCCAAATTCAATCTCCCTTCCTTCTTCCATTCCGTCTTCTTCGTTTCCTCCTTTATATGCTTCTCTCTTTCTCTCTCTCTTTCCCTCGCTTTCTTTCTCTCCTTCAATCAATCCTCCATTGCCTCCTATTGCATTGCCAAAAGGTTCAATTCTCATTCTCTTGATCCATCTCCCTTTCATTTCTTCTCTATCTGTTGCTTCGTTTTGTTGATTCATATCTGTTTTGTTTGTTCTTTTGTTGTGCATTGTGATGATTTCGTTTTGTTTGATGTTTGGAACGGATGAAAGAAATGAGAAGAGGAATGGCAACGTGAGGGATTTTTATTTCTGTTTTTGGACGTGAAGATGCCTGCGTTTTAAGATTTTGATTTGATTTGATTGATCGTCCATGCGTAATCATACCATTTCGGATTTGTTTGAATCGAAGGATCACATTGATTTCTTGATCGTTTTCTTTTCTTTTTGTTAATTTTGTATAATGAAGCATCTAGTGGATCATTTCATTGCTCCTCTTGAAAATCTTTAAGAATTGCATTGTGTATATTAAGCTTCTCAAGAATTTATGGCATCTGTTTGAGTGAGAATTGACAAAAGATCAATGGGAGGAAGAAGTTTTTTTTCAGGAGGCCTGGTTCTTATTCAGCTGTTTCTTTTTTGTTGCAATTTGAAGGGACGGGGGATATGTTTTACATCCAAGTATTACTAATTAGATAACTCAATTTGGTTAATTAAGTAGATACATGTAGGAGTCAACAGCTATGAGTGTTTATATTGTTATGACCTTGGCATTTGATGTAATAGTCGAAGTGTATGTAAACTGGCTTGTTGAGAAGTGTATACCCCAGGAAGAAACAATGGATGTGTTTGATGTTTAA

mRNA sequence

ATGACAAGAAAACCGGGAGGTGGTGTGGTTAAGAGGCACAACGGACGCGTTCTCGTGGATCCAGTCTGTGTTGCCTTCCTTCAACATCCAACGGTCCAAATTCAATCTCCCTTCCTTCTTCCATTCCGTCTTCTTCGTTTCCTCCTTTATATGCTTCTCTCTTTCTCTCTCTCTTTCCCTCGCTTTCTTTCTCTCCTTCAATCAATCCTCCATTGCCTCCTATTGCATTGCCAAAAGGAGTCAACAGCTATGAGTGTTTATATTGTTATGACCTTGGCATTTGATGTAATAGTCGAAGTGTATGTAAACTGGCTTGTTGAGAAGTGTATACCCCAGGAAGAAACAATGGATGTGTTTGATGTTTAA

Coding sequence (CDS)

ATGACAAGAAAACCGGGAGGTGGTGTGGTTAAGAGGCACAACGGACGCGTTCTCGTGGATCCAGTCTGTGTTGCCTTCCTTCAACATCCAACGGTCCAAATTCAATCTCCCTTCCTTCTTCCATTCCGTCTTCTTCGTTTCCTCCTTTATATGCTTCTCTCTTTCTCTCTCTCTTTCCCTCGCTTTCTTTCTCTCCTTCAATCAATCCTCCATTGCCTCCTATTGCATTGCCAAAAGGAGTCAACAGCTATGAGTGTTTATATTGTTATGACCTTGGCATTTGATGTAATAGTCGAAGTGTATGTAAACTGGCTTGTTGAGAAGTGTATACCCCAGGAAGAAACAATGGATGTGTTTGATGTTTAA

Protein sequence

MTRKPGGGVVKRHNGRVLVDPVCVAFLQHPTVQIQSPFLLPFRLLRFLLYMLLSFSLSFPRFLSLLQSILHCLLLHCQKESTAMSVYIVMTLAFDVIVEVYVNWLVEKCIPQEETMDVFDV
Homology
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BLAST of Lsi04G008810 vs. ExPASy TrEMBL
Match: A0A0A0KS74 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182020 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 47/76 (61.84%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 1  MTRKPGGGVVKRHNGRVLVDPVCVAFLQHPTVQIQSPFLLPFRLLRFLLYMLLSFSLSFP 60
          MTRK GGGV KR  G V         LQ PTV IQS  LLPFRLLRFLLYML    LSFP
Sbjct: 1  MTRKSGGGVAKRKKGPV---------LQDPTVHIQSHLLLPFRLLRFLLYML----LSFP 60

Query: 61 RFLSLLQSILHCLLLH 77
           FLSL QSI   + LH
Sbjct: 61 PFLSLPQSINPPIPLH 63

The following BLAST results are available for this feature:
BLAST of Lsi04G008810 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G008810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS741.4e-0761.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182020 PE=4 SV=1[more]
BLAST of Lsi04G008810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi04G008810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G008810.1Lsi04G008810.1mRNA