Lsi04G008760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G008760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RRM domain-containing protein
Location	chr04: 8595103 .. 8610613 (-)
RNA-Seq Expression	Lsi04G008760
Synteny	Lsi04G008760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAAGGACGTTATCTTCTTGAACGCCAAATTGACGTGAGAAACAAAACCCTCCGATTCCAACAAAGCTTCTCAACGATGATTGCCATTTCAATGGCGCTCATTCACCAAGTTTGCTCGCCGTCCGTCGCACGTGCATTCCGGCCTCGATGCGTCGCTGCCGTGCCTTCTCGGAACCTCTCCACCTCCATATCCCCTCCCGCTCGGGCCTCTCCTGAAGCTCCCAAAGTGCTCATCGGCTTGTCGGACCAGGAGCTACAACAGCTTGCCGTGGACTTCGGCCAGGTAACGAATAACAATCACTTTCTTACACTCTAAAAACCTGTTGTGGATTGCTTGCATTTGTTTAGCTAAATTTGATGGAGGTTTTTGCTTATGTATCGTTAAAATTATCCGTTGAGATGGATTAGGAAAAGTATAGAGGGAAGCAACTCCATCAGCTTATTTACAAGAGGAAGGTCAAGGAAATTGAAGAGTTTACCAACTGTCAGCGTTCTTTCTTTTTCTTTACTTAATTTCGCCGGTTTGTTCATTATCTTGTCATAGTGATTCGGGTTGATTGCAGTGCCACTGGCATTCAGGAATGATCTTCAAGAAGCTGGATGGAGAGTGGGCCGTTCGCCTGTTTACCAGTCTGTTACTGCTTCTGATGGGACCGTGAAGGTAGTTTGATATAAAGAATTTTCCGATTACATTCTTGTTGAATTGTTAAGATTTTATCAGAAAATGTTAATGGTTTATTTATCAGAAAATGTTAATGGTTTAGGGTTTAGGGTATCAATCCATTTTTAATACGAGTTCGTTTGACTTAAGGTATCAATGTGTCCAAATTTGCAGTTATTGCTTAAGTTGGATGATAACAGGCTGATTGAAACAGTTGGCATACCTGTGGAAGACAAAAACAATAAAGGTTCAGTTCGCCTCACTGCTTGCATCTCATCACAGGTAATATTCACATTTGGTCAATCTAAGACATGAACTTTGTGATATCTTCTTTCATGATTTGGGCAAATGGTCTAACACCATGTCAACTCAAAAAGTAAACACATTGCCTATTAGATGAAAGTATGGCATATCTATGTCTTTGAAAGCACTTGCAGTGGTTTCTAAACCTCTGGGACAGCAGACATGGTATCTGCAATTCATTATGGTATCCATTCTTTAATTAAATTTTTACTGAATTTCAAACATCAAGGTTGGCTGCCCATTGCGCTGTTCTTTTTGTGCCACTGGAAAAGGAGGATTTTCTAGGAATCTTCAGAGACATGAAATTGTCGAGCAGGTATTTTGTCTCTCTCACATGTTGTCTTCATGTTCCATTACGAACTTGAACTGTTCTGCTATCTTGTTGTTGCAGAAATTTGGAAAAAAAAAATGTAACTATGTCACGTATAACCCATTGTGATTAGTTGTATCTTATGTACACAGGTATTTGCAATTGAGGATATTTTCAACCGTAGGGTGACAAATGTAGTATTCATGGGAATGGGTGAACCAATGTTAAATATGAAACCAATGCTTGAAGCGCATCGGTGCTTGAACAAGGTTTACTTTTCTAGACTTATCTTGTCCTAATACTTTGTGGGATAATTTTTAGTTTACTATTTGATTTTTCCGCGTAACATTTTTTCTGTACTTCCTGATCTTTACCCCGTTACATATATTGCAAGAGAGGACTTCGAGAGGTAAAACTTGCATTTGGTCGTTTTAATGGTCCAGACTATTAGGAAAGGTAACTCTAGTAAGCTGGAGAGGACTTGGAGGCCTGTGCGACTGTGCCTTCACACTCTAGCAAAAACTTTCATTGAGAGTGAAATATACCGGAGGGCTTACTGCATTACAAGCATACAGGAGTAAAATATACAGGGGAAAGCCCTCCAGAGCATTCTGCATTACAAGAAGCCTCTCAAATTGGTAAAAGTCGTATATATTGATGAGAAGCCTCACTAAAGAACTTTGAAAGGAGAAAAAAGCAACAATCTTCAAGAACTGCCCCGAAAATATATTCACCAGGCACCTCATGAAACCATTCTCTACAAATGTCTCATAAAATTCTAATAGCATTGAGCCATTGGATATTAAATTTTCTTTTGAAAGGGTGATTGTGCTTCACACATCTAGGAGCAAACAATCAAAAGAGCTAGATGACACAACAAAAGTATGGATTTTTTGAAGAATAAAATAACTCTTAAATTCATTTGGATTGCAAGTTACAGGTTTTCTATTTATGTCATCCCCCTTTTATGCCAAAGAACAAATCCAGGAGATTAAGGAGACATTAGGAGGCCTAGCTTGGCTTTTTTCCCGATTATTCAAACTGCCCAGGAGGAGTGTCCAAATGTAAATTGTAAACCTATCTTGACTTTGTGTATCCATACATCCGAAGCTTCTGGTTTGGTGCATGTAGGCATAATACTATCTTTTCGATCATTCCCAAGCAACCCCTTAGAATTTTGAGGATCTTTCAGCGTCCTGCATGTTCACTTTGAGATATAGGTTTTTTATGCTATACCTTTTTTTTTTTCTCGCTAAATTATAAAATTTGATCACATCCAATTGTCATGGCCTCGTGGGAACTTGGGAAGGCTGGCCTTAAAGTTCAACCAGGTTTACTACATGCTAATTTTTTGTTGCTGAGTGTACAATTTCTCATCAATTCTTTATATTTTTTCAAGGATGTTCAAATTGGACAAAGAATGATTACAATTTCTACGGTGGGGGTTCCTAACACAATTAAAAGGCTGGCTTCTCACAAGCTTCAGTCAACATTGGCTGTCAGGTAACATATATTCTACAGGAAAAGCATTCTTTTAGATTGTTTGATTATTTATTTATGATTATTATTTTTTGAAAAAAGAGAACCATTGTCAGTGATATCTTGCCGAGGGAAAAGTTTGCTAGTTTCCGTATGGCATATACTAGTGACAGATAAATTATATGTACGGTTTAGAAGTGTAGGATTCTTTTTTTCTTCAGTTAATGTTTATTGGCTGGTTATATGTTCTCATCCCTAAATTTTTAATCGGTAGCAGTTAGTTGAACCTGATCTAAGAACTGTGCTAATTGGAGAATTTTGGCACCCCAAATATCTGAGTAGAGAGGTTCATGTATAAAGTGATCGATTGCTTTCTTGCAGTTATCTCATTAAATTCTGTTAAATTTAGGAGTTAAATAACTGATATCTCTCTGATTCTAACTTTCATTTGAAGAGTTTATATATAAATAATTTAAGAAATAAAATTGAGTAATAAAGAAGACATGCAAAAGAGGGAGAGGAGAAATCCTCCCAAATCCCCAAGAGCTTGCACAAAGCTTTCCCAGGTGGTATGAATTATAACCACAGAATGACTACAGAATCGTTAAGAAATTATACTAGGCAGACCCGTTCTTGAAGAGTTTTATCTTGCATCTCAAAATTTTCCTCTCCCAATCCGTAAGTTCCAAAGGTTAGCATAGGTTGTTTTGAAGAGGTGATCCATGGGAATTTGTAGGACGAGGTCCTTAGATTTTGGCTCTCTTTTATATTTTAGTTTGATTAACTCTTCATTTTATGCCCATCAGCTTACATGCACCAAACCAGAAGCTTCGGGAGACTATTGTGCCCAGTGCAAAAGCATATCCTCTTGAAGCAATTATGAAAGATTGTCGTGATTATTTCCTCCAAACTAATCGGAGAGTATCGTTCGAGTATGCACTTTTAGGTACTGGCATCACTTTAGCAATACAATCCTCATCTCTCCTTTCATTGTGTTTCTCACTGTAGTTCGGGCATCGTACATCTGACAAATTGTTTTCCCCCCAATTTTTCGGTTTATCATTTGAACAGCTGGAGTCAATGATGCAGTAGAGCATGCTGTAGAACTTGCAAAGCTTCTTCATGAATGGGGAGGTGGCTATCACGTGAACCTGATACCTTTCAATCCCGTAGAAGGCTCTGAGTATCAGCGTCCATACAAGAAAGCTGTATGTTCTCGACAGACGTGCTAATGTTTCGTATTATAAACGTATATTGTTGTCTTCACTAATCCATAATCTTTTCTTCTATTTTCAGGTGATGGCATTTGTAGCTGCTCTAGAGTCCCATAAAATCACTGTAAGCGTTCGTCAAACAAGAGGTCTCGATGCAAATGCAGCTTGTGGTCAGCTAAGAAACCAATTTCAAAAGAACCCTTTGCTTCTCGATTCCGACATCAGTCAGTCTGAATCAGCTGTAGCTGTGGCATGTTGATGCAGAAGTTCCTTACTATTTCCTATTCTACCAACTTCATTATGTTGCATCCACCTGGAGGCTGGAAGAGCCAATTTTTTGTGGGGGCAAAGGCACCTCAAGGAAGCTTGATAGTGATGGATATGAAGAATGGAGGGGCAGCCATCACATCCAGGTCTGCTTGTTCTATACTCTAAATTCACAAGTTGATGTACATTGTTGCGAAGCTAAATTTGAGATACAGTGGAGCATTGAGGGGGGATCGGATCGTGCATTTATCGAGGTAGTATAGTAGGGTATACCAATGGTCTCTTGGCTCTTAATCTAAATCATTAGTTTCTGAGAGGGAGGAGAAATCTGAAGGCCCATGTTTAACTACTTATCCACTAGCTGAAAATGAAATTCTGCTTGGTAAGTGATTTTATTGCATATCTATCCCTGTTTACTGATAGAACATATGGTTAAAATTTTCAATGAGATGTCAATTTAGAGTTGTTTTATTTTCCCATGTACTGATAACTTTAGGATGATTTATTTGTTGCTAATTGGTTGCATCAATCTGGCTCCCTTCAATGACCCTTTATGATTGTAATGTATAAACATATATGTATCATGTATATCTCAAACTCCTCACTTCAGGTCTATTGTTGTGTTTACAATTTTTGTCCCCCCCCCCCCCCAAAAAAATGTGGTGTTTACAAAATTTTTACATCCGCATTGTTTTTCCCTTAATTTTTGCATTCTTTATAAATAATATTTTTTTTTTTGAACAGTTCTTTATAAATAATATTGATATTCAACAGAGATAGAAACAACAGTTATGGTTTGTTTGATATTTTTTTATTTTAAAATTTTTTATGGATACCCTTTTCTTAATTCTTGAAATCATCTGTTTCAAAAAAAAAAAAAAAAAATTATCACCAACTATGGCATATACTTTTCTGAATATATGAGAATTTTATCAAATAAGGAAACAGAATCAATTGCCCTGAACTTGTCAAGTTGTATAAATTTCAACTTTAAATTTTCAATTTTATCAAATTACTCCTCAAATTTTGTTGAGAGTGACAATTTTAACCTTAAACTTTAAAGAGTGTTGAAATATTATCTTGTAATAAACTTTTGTTTTAAATATTGTTAAAAAAAATTCTCTTTTGCATTTCAATGAATTATAGACTTATATGAAATTTATATTGGACTATATATAAAAAAAATGCATTGGCAAATTTTATTTGGTTGAAAATTTTGAACTTTCAATTATGTGTGTTAGGTCAAGACATATTCAAATTAGGCTAAATTATACATTAAACAAAATTTTCTAAATCTTGTCATTTGTTTAAAAAATATCTTTACTCTTTTAAAAATTGCAATATTACCATTAACTTTTAAATGTTTTAAAACTATTATTGAAGTATAAATCTTTTATGAGTCGTTTGATTTAAGGTTTTATACATGTCTAGGAATAAAAATCCTGAAAATCAAGAATGATTGTATTTGGTTGTGCACGAGAATGTCTATCAGAATTTTATGAGAACAAATTATCTTTGTATTTAATTTATAAAATTAATCATGGACACTTATGTAAAGTTCTTATAGATTAATTGATAAATAATAAATTCAATTTAAAGTTTTGAGCAAAATTAATTATTTAACAATCAAGTAATAATATTAATTACAAGTATTTGTAAAATGAGTAATTTATAATTAAAGTTACTTGATTACATAATTGATGTATCAATTTGATGAATTTATATAATTATGATGTATTAATTAATAAAACAATCAAAATTAATCTGAATAAATAAATATAACATTTTGTGATTAAAAATTAAAGAATTATAATTAATCAATGATAAAATAATTATAATTATTACAAAATAATCTCATAAAATATTAATCATAATGATAATTAATTAGCTACATATATAATTTAGGTTTAAATACTATTTTAGTCCCTGTATTTTTTTGCTTTGGTTCATTTTGGTCCCTGTACTTTTAAAATATTAATTCTAGTCTCTATACTTTCAACTCTGGTTCATTTTAGTTCATGTACTTTCAAAATATTCATTTTGGTCCTTAAACTTTTAACTTTGGTTCATTTTGGTCCTTAAACTTTCAAAAAGTGACCATTTTGATACTTTATGAAAATGGAGGGACCAAAATGATCACTTTTTGAAAGTATAAGGACAAAAATGAACATTATGAAAGTATAAGGACAAAAATGAACAAAAGTTGAAAGTAAAGGAACCAAAATAAACATTTTAAAAGTAGGACCAAATTGAACCAAAACCAAATGTACAATGACCAAAATAGTATTTAAACATATAATTTAGAGTATTAATTTAGAGTATTAATGCATCAATTCTTTACAATTTACTGAAAAATCTGTGTGTATATATATGTGACTAATTAATTAATTAATTAATTAAACTGGAGTATCTAAATTCAAATATTATAATTTAAATTTTAATATAATTTTCTAAATTATAAATTTAATATTCATTTATTAATTAATTTTAGAAATATATAAAATAAAAGAATAGGTTCATGTATTAAAAGAAGAGAGAAAGTGGGCATCAAGAAAACCCACACTTTTGGATAGGTATCATTCATGGGTATAAAAAATGCATGAGAATAGCTTATTCTCATGCCTAAAGCTTCAAGACTTGTACCAAACAATGGGATGTGTATTCTTTACCCATTCCCACACTTATTCCCACCTCAATTCCCTCAATCCAAACGCCTCCTTAGGGGGTGTTTGGGGTAAGGAGTGGAGCTGTGAAGTCTTGAAAGTTGATGTTTTTAGCAGTCGGACCTACGAATTCCTTAAGTCAAACAAGGAGTGTAGTTCACAACTCCACACTTCCCAACTCGTTGGTCTGAACACCCCAAATTTTTGTTCAAGATCAGAACCTGAATTGATTTAGCGTCATTCAAGATCACTGTCGACACACTGTTCATGGTCCCACCATCTAATGATCTAAAAGATTTCTACTCCAAAAGTAGATTTGAAATGTTTATGAAAAGTAAAAAATAATATTACAACTTTTGAGAGAATAAATATATATTTTTTCAAAAAATACATAACGAAGTATGGGTATTTTTTTATAGAATAAATTTAAAAAAATACCCTTAAAATTTATACTTTGTGTAAAAAATACCCTTAAATTTTGAAAGAGAGTTCAAAAATAGTTTTACATTGAAACCATTAGTGTTTTATTTCATGATTATTCTTAAATTTTAATACCCTTATATTTAAATAAAAGTTTAAAAATACCCTTACGATTAACATATAAATAGAAACTATTAACACCTCGCTGGAAAAATATATTTAAATTTTCAAAAGGTGCATTAGTTCCATTATCTTAAAAAAAATAAAAGGTTCTAACTATTTATCTATACCCCTTACCACACCCCTTTTCCATTTCATCTCTTTCTTCTATTTCAATACATGGCCGCTTTTCTATTTTCTTTATTTTTTTCTCCTTCTTACTTTTCTTCTAGTTAACTATTTGACCTCTTTTTTATTTTCACAAAAAGAAGAAAAGACTACCCCTCTCAACTAAGGTATATAAATTTAATAATAATAATAATAATAATAATAATAATAGAAGCACCAAAGGCAACATTAAGACGTAATTTTAATAAGGTTGTACGTTAGTAGATGTGTGCGCGTTAATAGCCAAATACATTCTTTTTAAATATGAATGTTTATCGTTTTGGTAAGTTTTAAAGAGAGGTTTTGATTTTGGAATTTTGTGAGATTCGGTAGGATTTTATGCTTTAACTTGAAGTTTTGGTTTATATTTTGTTGTAAGAGAATTAGTGTAAGAACTGAACAAATGAGAGAAAAATGAGAGTAATTAAATGAAAAAATAATATCTACAAAATTCATTTTAAAACTGGTGCCTTTTGGACTCAAGAAAGCTTCAAACAAATTGATCAACACTATACTTACTATAGGAGCATCTTTTAACTCTTTTTTTTGTAGGGCTAAGAGTATTAATGCACTTTTGAATGTTGAATGAGTATTAACGGTATGTTTTCATATACTAATAATAAGTGTATTTTTTAAGTTCAAGAGTATTTTTTATACTTTTGAAAGTTCACATGTACTTTTGAACAAAACATTAACAACTTCCATCTAAAACTAACGAAAGATTATTTTTGATTTTTTTTTCAAAATTTATGTATATTTTTTAAACTTTTAAAAGTTGAATGATATTTTTGACACAAAGTACAAAATTAGAGGTATTTTGTATAACACAACTTTTTTTAAAAAAAATAATTCAATGGTCAAAATATTTTAAAAATTAAGTGATCTGTTGAACCATATATGTTGAGGGTGGTGCCCTAGGCAAGGCCTAAAGTCCACAAGCAAGCCCAAGCTTAAGAAAAATCGAGAGGTGGCATGGAAAATGTGCACCTAAAAAGGGAGAAGTCAAAGTCTTGGGTTTTGGGCTGATCAGTCGAGCCGGTAAATATATACCGATCGAGAAATAATCGAGTTGCACTTGGTCTGGCACGCTGCAGCCTCGAGTGTTGTAAACTACCTTTACATCGCCAGAGTTATGTGTAACCTCATGTGACTATAAGAGGAAGGACATTATAAAATAACCTCATGGACGATCCCAAATGAACAGAGTAAGTAATCTCCAAATGAGAGTCTGACCTTACTTTTGTATGCAACTATACACTCCTTGTACTAACTTAGACATCAGAGTGTGTAGGCTCGACACCACGTTGGTATGAGGATTTTCACGCAATTCAACTCGAAAAGTAAGACCATACCAGGAGAAGTGGTTTGGAGATCAAGCCCACGACAACGACAGACGCGTGTGAGATCTGAGCGTCAACATCTATCCAAAGATGAATAACCAATAGGGTAGTTGTAAAAAGTAGCAATTTTAGGAATAATAACCAAGTGTATAACAACATTTTAAAAAAATTACAAATATAACAAAATCTATTCATAATACAGTTCTATGACTGATAGACTCTAATGGTCTATGAGTGATAGACCACCTAGACCATAAAAATTTATCAGTGAAGTCTATCACGAATAAATTTTACTATATTTACATTTTTTTTGAATCAATGCTATATTTGCAACTCTTCATAACTAATAACTTATCATCACTATATAAATTAATTATATTATTTTTATTATTATTATTTATTTGTTCTGGTCAAATTCTTAAAACACTCGCATTTGAACACACAGATAAAAATCTAAACCCTACCATCGCATTGCAGTCTTCTTGTTTCGAGAGTTCACAGAAATCAGATCGAGGGAAGATTCTCTCTTCGCATTCTCTCTTCTTCCTTCTCTTTTCTTCAGGTAATTATACCTTCCGATACCTGGATTCACTATTTTGTTTATGGATGTATAGATGATTCTTGATCGAACCCAAACCCACAGCCACTTTCTTTGTTTCGATCATTCCGTAGCTGTTTAGCTTTACTCTTAGTTTGAATTATCTCTTTGCGTTTCTTTAGGTAAAGAATTGGGAAAGGTGAAGAGAGAGCCTTTCCGTCGAACGACTCGAACCCTCTTGATTCCTTTTTAACATACTTAGCTATTTTTGTGCTGTTTCTTGTGTGGTTTTGTGATCTTCAACTTTTTAATATGTATCTTACCGGGCAATTGAGAGGTTTAACAATCGAATCGGGAATTCTGAGCCCGTGAAGTGTAGTTTAGGGTTTAACAGTCAGAACCCAGTTTTCAGTTTAGGATTATGAGTGGGTATCATTGGATTAACTACCGTTCTAATTCTTATTATTTTCCTATTTAGATAGTAATTAGTTTTAATTGGTAGGAAGTTTTGACAATATGCATCTTATTGCAGACCTCACCTGATAATTGTTTTGGACAGGTCAAAACATGAGAAGATACAGTCCACCATACCATAGTCCTCCAAGAAGAGGATACGGTGGTCGTGGAAGAAGCCCCCCGGGTAGGGGTTATGGTGGTGGTGGAGGTGGAGGTGGCGGCGGGTATGGAAGACGAAGGGAACAACCTCATGGTAGCCTTCTGGTTAGAAATATTCCTATGGATTGCAGGTCAGGATTTCACCGCTTTTTTCTACTACTATTCTAATTGATGAATTTGTTGTTTTCTCTCACTGCATTTTAAGAACTTGGCTTCTGGTTGTATTGGTACATTTAGGCCAGAGGAGCTTAGAGCGCCATTTGAGAGGTTTGGACTTGTTCGAGATGTGTATATTCCAAAGGACTATTACACAGGGTGAGCATCTTGTGTTTATTTTTCTTATTTATTTTTCACACCACTCCATCCATGGTATGTGTTGGATTTATTAAACTGTTATTCCACCTGATTCTTGTGTGTTTTTATATGGTTAATATCTGAACTTCTGACCTCCAATTTGCATCAAGTTTTAATCAAATTAACCTCAAACAGGGTTCGGGTGGTAATTTTAGGTTTACTTGTTAAGCATTCAGCCAAGCCTTTTGCGTTAGAAATTGAGCCTGAGTACTTTCTCTTGTTTGATGCTCTCAGCCGTGTGCTAAGCTTCTTATTTAAGGCAATTATGATCATAGTCAAAATGTATAGAGCACATGTAAAGCTTTTCTCTTTTGCATTTCAAGATTCTATTTTCAGAACAATTTTCTTTTTCTTCTTTGTGGAAAGAACTCTCATGTGCCTACATACGCAAGATGATATAAACTCTTAAGCAACTGTGGGGGGACTCTTTTACAACTATTTTTTAACTTGATCAATTCTTGAGGGTGTACGAATGTGCACTGAGTTCTAATTTTTTTAGACAAAATTTTTAGATCGTATGGAACATCCAGTTGAGTTTGTTATTCGTAGTCAGGGAATGAAGAGGATGAACAATGTCAAATGAAATTTCACCGGACCTTATTTTTTCTGGATGGATCTTATTCCCATTTCATAGTGTGTTTTGAACTGCTTTGTCAGGGGGTATATTGGTTTGAACTTTGAAGTTAAAACAAGCCCAAGCCCCTATTAATGAGGGTCTACTACCTTTCACTGCCTAACATATATCTCATCAAGAATGTAAAGAATAATATCGAAATGAGGGTGTCTCTCTCTGAGGAGATATTAGATAACTACACCCATCAATAGAAGTTGATGAGGAAGAAGGTAGATTCTTGAGCAATTGAAGCCAACAAGTTGAAGGTTTTAAAGTTGTGGAATGTTTGTTCAAGTGCTTCATGTCCCAAGTGTTTGAAGAATTTTCAAGTCACGAATTTTTGGTTTCAAGTATTTATATCAAGAAATGTGAAGTTGATGAGGAAGAAGGTATATTCTTGAGCAATTGAAGCCAACAACGTGAAGGTTTTAAGGTTGTGGAATGTTTGTTCAAGTGCTTCATGTGTTCCAAGTGTGTGAAGAGTTTTCAAGTCATGAATTGTTGGTTACTTATATCAAGAAATGTGAAGAATTTTCAAGTCAAGTTACGTTGAATTGAAGTGCTTATAGTTACAAGAATATGAAGATTTTTCAAGTCACTTGCCTCTTTCATGCTTGATTGTAAAGATAAGGTTAGCTACTAAACTTTGAAATTAGCTGTGCTTTATGTAACTCCGGCCAAAGCTTTGAAGAAAGCAGTCTGAAGTTAATATTGGATATGAAAAGAAAGCTATTTAGTTTATGGAATCCCAAATCCTTTTACCATGAAAAAGTATATTAATGTAATCATTCAATCTAGTTACCCAAGATTTGTGTCCAGAAATGCGTTTCTTATTTTTATCACTTTTTTCTTTTGAATTCTTTGTAGTGATCCTCGAGGATTTGCGTTTGTGGAGTTTGTTGATCCTTATGAGGCTTCTGAAGCTCAGTACCATATGAATGGGAAAAAATTTGCTGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGGCAAAGGAGTAGAAGGTAGTTGTTTATTCTCTTTTTCCACTTTTTCTCAATGGTTTCAAGGGACTGCAAATTTACAATCCACACCCCCTTGCATCTGCTTTCAAGTTTAAGTTGCATGCCTGCTTGCTTGAGCCTTGAAGTATATTTATTCTTGTTCATCGGGTAAAAAATGTCACCTTTTTCTGCATTGTTACTGACCTGCAAGCAATCTACCTTATTCTGAGAGGAGGAGGGGAGGGATCAAAAGCAACCTAAAACTCTCAGCTCTTTTCTTTCACTGTGTTCAATGGCCAACAGCCTTTTATGATGATTTTTTAGTTGCAAGTTGCATGTTTTTTTTAATTACTATTCTTTTTTTCCTCTTTGTAGGGGACCATCTGGCTATGGTGGACGCCGTTCTCATTATGGTATGGTACAATTAGTCTCTCTTCAAATTTTACGAATCTTAACTTAAATAACTTTTATACTTAAGTGAAAACCCCAACATAAAAAAGTGAGAATAGTTCATGTTACTTCTGCTTCTTGACTGTTAAAGAAGTCTATAGCATAAGAAGTCTATAGCATTATGTATGGTTGTTCCCCTACAATGTACCTGCAAAGCTTAGTAAAGAGCACAACATAGCAATTCCAAGGGCAATAGCACTGTTCTATTGATAGGAAAAGGTCGAAGACACCAGATTACTAGAATACAACAGAACTTAAAGATAAAGAAAACAGAAAGATAACATCCAGGTACAACCAAGAGAGCTGTTTCTCTCCTACCCAAGCCTCCAGCCACAAAATACCACAATGAGGCTCTTCCTTCCCCCCAAACCCCACATAATCAACCTTGCCCTTCACAAACAAACCAGGCATGTCCCACTAACCCACAAACTAACCGCCAGTGTTTGAATTACCTGATTTTGCCCCTTCTAGAATATGTCTTCACATTGGTGGGCCTTACACATTATTACTTGTTATGGAACTCTTGGACATCACAGCTTGAAGCAGTAGTATATGGGAATTATTTCTAAGATGTTAGATTGCATGAGTATTCTTATTTGACTTTTCTTGAGACTTAAGATTGGTGTATTTATATACCTACCAATGCAACCGAGCTTATTTATAAGCTCTAAGTTAAGTGGTCATATAATATCCTTCTTTAAGATTGGTATATTTATATACCTACCACAAGCTTATTTAGAAGCTTTTAGTTAAATGGTCATCTATATCATTTAGATGGACTTTTTATTTTATTTTTTATGTAATGAGCTGAGAAGTTTCACACATGTCACACACAGACAGATAAATTATGGTATTTGATTGGTCGTTTTACTTGATTTTTCTTTCCTTAGTTTGATGCTTTTGTTAGGAGATACTGCCTCCAAGGCTCTAAACCTCTTGTTTCCACATGTAGCTTCTTTTATTAGGTTCAAATATAAGCATATAATATTTCTTTTTGGGTTAGTTGGGTTCCTAAGTGAGTGTGTTTGTGTTAAATTAGCATAATGACAGCTCTTTTGTTATGAAATTTTGAATGTGCGGTCTTGCAGGATTTGTTGATTGATTAAATTAAAAATACAAACCTCTTCTGTACATTTTATTTGTTTGTGGCATTGTAGTTTTCAGTTTGTTACTAAATTTCAAATATGCATACAAAAGCTTGGAATCAAATCAATCATTAACTATTGTACTAGACAAAATATGTCCATATTGGATTTTTGTATTCAATGATCAACCTGGGCAGTAGTTATCGCTTGATTTATTTATTATTTTTTTTTTGTGTACAATATAGGGCGTTCTAGATCTCGTTCAGTATCCAGATCACGCTCCCCTCGCCATCCGTCGGGTTCAAGAAGTAGATATCGATCAAGGTAATCTAATTATAAAATACATGGTTCATATTTATTAATGCTTTAGGTAGACCTAAATGTGCCATATGAAATTGTCAGGTCCTACTCTCCTGCTCCGAGATGGCGAGGTGACTATTCTGTTTCCCCTGGTAGAAGGCATGCAGATTACCCAGAATCACCCAGAGGTGCTCCTCGTGAGCGAGACGGTGAGAGGAGTCGACAAGTATATTCTCCTGGTTATGATAATGCTGATGACCACGATCGCAATGGAAATGGAAATGGATATCATGAGTAAGTTGAATGATTTACTGATGACTTCTGCTTGACTGTGGGGGTGCTTCATGTTCTTATTGCAACCTGATCTTTTCGCACAATTTCAACTATTTTGCAATTTTGTATTTATTTGCTTTCCGGTAGCATCTTGAATATGAGACTATTTTTGGTGACTGACTTTACTTGAACAAGATCTGTATTATAGGTTGTAGAGACGAGACTAGTTTTGGTGTTTCTGTGTTTTTGCATGCGTTGCTTATTTGATACGCTAGTCTCATGGTTGAGATTTGAGAATGTTCTCTTTCATTTTGTTTAATCTTTAACTTGTCATTTTTGTTTACTATGCTTGTTTAGAGATGTGTTCTGTTCTGTTTTATTTATTCGTCGATCCATTTTCTCTTCTTTAGCAAGTCTGCATTTGAAGGGGAGGATGCACGAGCTAATTGGAGGTCGTCTCCTGGTAGAACATCAAGATCCCCTTCGGGGTCCCGATCCCGCTCTGCTGATGCGTCCCCCAGACATGGTAGATGATTTTTCTTTGAGAAAACATGGTAGTAGATGATATAAACCATCGTTTCTAATATCCAACATTTGTTACTATCCACTATCCAGGCGAAGTTTTTAGATTGTATTTTGTTCGATGTTCTTAGTGTGTTTGGATTTTCTAGACAGGCAATTTTCTTTGCTCTCATTTGAAGTTTAAAATTACTATGGTAGACCATCCAACCTCTTGCTTCTTTTCTGGATTGCCAATGCTCTTCTTCTTCTCCATCTCATTAGCATCATCGACAAGACCACAACCCTTCTCAGCCACATCATGCTATTGACGTGAAATTTGATCTCTACTGTGTAGAGATGATGATGCATCTTCACGATCTTCACTAGTAATTCATCTTCATATTATGTTACTTTTGGCAATGCATCTTCTCACACCAGTCAAATTCACAGAACTTCTGGTTTTAGATCAAACTTTTATTTTATAGTGTTTTACTAATCTTGCATCTCAACTTACTATTCTCTTGGATTTTCTCTGCATGGTCAAAGTGTAGTTTATATTCTCTTTGGTTGAATTTATTTGGGGAGAAAAAAAAAGGCTTCTCTGTTTCCGCATGAACCAGAAATGTTTGCTACAATCCAATCTCATCAAAAAGGCTAAATCACAGAATACTCTTTGCCCTTGTTTGATTTTTTATTTTTGATTTTTTTTTAAATGAATGTTTTAAAACTATCACGAGGAAGAAATTATTAAGATTTAGGATGGAAATTTGGATGGAGTGGTAGTGTT

mRNA sequence

AAAAGAAGGACGTTATCTTCTTGAACGCCAAATTGACGTGAGAAACAAAACCCTCCGATTCCAACAAAGCTTCTCAACGATGATTGCCATTTCAATGGCGCTCATTCACCAAGTTTGCTCGCCGTCCGTCGCACGTGCATTCCGGCCTCGATGCGTCGCTGCCGTGCCTTCTCGGAACCTCTCCACCTCCATATCCCCTCCCGCTCGGGCCTCTCCTGAAGCTCCCAAAGTGCTCATCGGCTTGTCGGACCAGGAGCTACAACAGCTTGCCGTGGACTTCGGCCAGGAAAAGTATAGAGGGAAGCAACTCCATCAGCTTATTTACAAGAGGAAGGTCAAGGAAATTGAAGAGTTTACCAACTTGCCACTGGCATTCAGGAATGATCTTCAAGAAGCTGGATGGAGAGTGGGCCGTTCGCCTGTTTACCAGTCTGTTACTGCTTCTGATGGGACCGTGAAGTTATTGCTTAAGTTGGATGATAACAGGCTGATTGAAACAGTTGGCATACCTGTGGAAGACAAAAACAATAAAGGTTCAGTTCGCCTCACTGCTTGCATCTCATCACAGGTTGGCTGCCCATTGCGCTGTTCTTTTTGTGCCACTGGAAAAGGAGGATTTTCTAGGAATCTTCAGAGACATGAAATTGTCGAGCAGGTATTTGCAATTGAGGATATTTTCAACCGTAGGGTGACAAATGTAGTATTCATGGGAATGGGTGAACCAATGTTAAATATGAAACCAATGCTTGAAGCGCATCGGTGCTTGAACAAGGATGTTCAAATTGGACAAAGAATGATTACAATTTCTACGGTGGGGGTTCCTAACACAATTAAAAGGCTGGCTTCTCACAAGCTTCAGTCAACATTGGCTGTCAGCTTACATGCACCAAACCAGAAGCTTCGGGAGACTATTGTGCCCAGTGCAAAAGCATATCCTCTTGAAGCAATTATGAAAGATTGTCGTGATTATTTCCTCCAAACTAATCGGAGAGTATCGTTCGAGTATGCACTTTTAGCTGGAGTCAATGATGCAGTAGAGCATGCTGTAGAACTTGCAAAGCTTCTTCATGAATGGGGAGGTGGCTATCACGTGAACCTGATACCTTTCAATCCCGTAGAAGGCTCTGAGTATCAGCGTCCATACAAGAAAGCTGTGATGGCATTTGTAGCTGCTCTAGAGTCCCATAAAATCACTGTAAGCGTTCGTCAAACAAGAGGTCTCGATGCAAATGCAGCTTGTGAAGTTCCTTACTATTTCCTATTCTACCAACTTCATTATGTTGCATCCACCTGGAGGCTGGAAGAGCCAATTTTTTGTGGGGGCAAAGGCACCTCAAGGAAGCTTGATAGTGATGGATATGAAGAATGGAGGGGCAGCCATCACATCCAGGTCTGCTTGTTCTATACTCTAAATTCACAAGTTGATGTACATTGTTGCGAAGCTAAATTTGAGATACAGTGGAGCATTGAGGGGGGATCGGATCGTGCATTTATCGAGTCTTCTTGTTTCGAGAGTTCACAGAAATCAGATCGAGGGAAGATTCTCTCTTCGCATTCTCTCTTCTTCCTTCTCTTTTCTTCAGGTCAAAACATGAGAAGATACAGTCCACCATACCATAGTCCTCCAAGAAGAGGATACGGTGGTCGTGGAAGAAGCCCCCCGGGTAGGGGTTATGGTGGTGGTGGAGGTGGAGGTGGCGGCGGGTATGGAAGACGAAGGGAACAACCTCATGGTAGCCTTCTGGTTAGAAATATTCCTATGGATTGCAGGCCAGAGGAGCTTAGAGCGCCATTTGAGAGGTTTGGACTTGTTCGAGATGTGTATATTCCAAAGGACTATTACACAGGTGATCCTCGAGGATTTGCGTTTGTGGAGTTTGTTGATCCTTATGAGGCTTCTGAAGCTCAGTACCATATGAATGGGAAAAAATTTGCTGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGGCAAAGGAGTAGAAGGGGACCATCTGGCTATGGTGGACGCCGTTCTCATTATGGGCGTTCTAGATCTCGTTCAGTATCCAGATCACGCTCCCCTCGCCATCCGTCGGGTTCAAGAAGTAGATATCGATCAAGGTCCTACTCTCCTGCTCCGAGATGGCGAGGTGACTATTCTGTTTCCCCTGGTAGAAGGCATGCAGATTACCCAGAATCACCCAGAGGTGCTCCTCGTGAGCGAGACGGTGAGAGGAGTCGACAAGTATATTCTCCTGGTTATGATAATGCTGATGACCACGATCGCAATGGAAATGGAAATGGATATCATGACAAGTCTGCATTTGAAGGGGAGGATGCACGAGCTAATTGGAGGTCGTCTCCTGGTAGAACATCAAGATCCCCTTCGGGGTCCCGATCCCGCTCTGCTGATGCGTCCCCCAGACATGGTAGATGATTTTTCTTTGAGAAAACATGGTAGTAGATGATATAAACCATCGTTTCTAATATCCAACATTTGTTACTATCCACTATCCAGGCGAAGTTTTTAGATTGTATTTTGTTCGATGTTCTTAGTGTGTTTGGATTTTCTAGACAGGCAATTTTCTTTGCTCTCATTTGAAGTTTAAAATTACTATGGTAGACCATCCAACCTCTTGCTTCTTTTCTGGATTGCCAATGCTCTTCTTCTTCTCCATCTCATTAGCATCATCGACAAGACCACAACCCTTCTCAGCCACATCATGCTATTGACGTGAAATTTGATCTCTACTGTGTAGAGATGATGATGCATCTTCACGATCTTCACTAGTAATTCATCTTCATATTATGTTACTTTTGGCAATGCATCTTCTCACACCAGTCAAATTCACAGAACTTCTGGTTTTAGATCAAACTTTTATTTTATAGTGTTTTACTAATCTTGCATCTCAACTTACTATTCTCTTGGATTTTCTCTGCATGGTCAAAGTGTAGTTTATATTCTCTTTGGTTGAATTTATTTGGGGAGAAAAAAAAAGGCTTCTCTGTTTCCGCATGAACCAGAAATGTTTGCTACAATCCAATCTCATCAAAAAGGCTAAATCACAGAATACTCTTTGCCCTTGTTTGATTTTTTATTTTTGATTTTTTTTTAAATGAATGTTTTAAAACTATCACGAGGAAGAAATTATTAAGATTTAGGATGGAAATTTGGATGGAGTGGTAGTGTT

Coding sequence (CDS)

ATGATTGCCATTTCAATGGCGCTCATTCACCAAGTTTGCTCGCCGTCCGTCGCACGTGCATTCCGGCCTCGATGCGTCGCTGCCGTGCCTTCTCGGAACCTCTCCACCTCCATATCCCCTCCCGCTCGGGCCTCTCCTGAAGCTCCCAAAGTGCTCATCGGCTTGTCGGACCAGGAGCTACAACAGCTTGCCGTGGACTTCGGCCAGGAAAAGTATAGAGGGAAGCAACTCCATCAGCTTATTTACAAGAGGAAGGTCAAGGAAATTGAAGAGTTTACCAACTTGCCACTGGCATTCAGGAATGATCTTCAAGAAGCTGGATGGAGAGTGGGCCGTTCGCCTGTTTACCAGTCTGTTACTGCTTCTGATGGGACCGTGAAGTTATTGCTTAAGTTGGATGATAACAGGCTGATTGAAACAGTTGGCATACCTGTGGAAGACAAAAACAATAAAGGTTCAGTTCGCCTCACTGCTTGCATCTCATCACAGGTTGGCTGCCCATTGCGCTGTTCTTTTTGTGCCACTGGAAAAGGAGGATTTTCTAGGAATCTTCAGAGACATGAAATTGTCGAGCAGGTATTTGCAATTGAGGATATTTTCAACCGTAGGGTGACAAATGTAGTATTCATGGGAATGGGTGAACCAATGTTAAATATGAAACCAATGCTTGAAGCGCATCGGTGCTTGAACAAGGATGTTCAAATTGGACAAAGAATGATTACAATTTCTACGGTGGGGGTTCCTAACACAATTAAAAGGCTGGCTTCTCACAAGCTTCAGTCAACATTGGCTGTCAGCTTACATGCACCAAACCAGAAGCTTCGGGAGACTATTGTGCCCAGTGCAAAAGCATATCCTCTTGAAGCAATTATGAAAGATTGTCGTGATTATTTCCTCCAAACTAATCGGAGAGTATCGTTCGAGTATGCACTTTTAGCTGGAGTCAATGATGCAGTAGAGCATGCTGTAGAACTTGCAAAGCTTCTTCATGAATGGGGAGGTGGCTATCACGTGAACCTGATACCTTTCAATCCCGTAGAAGGCTCTGAGTATCAGCGTCCATACAAGAAAGCTGTGATGGCATTTGTAGCTGCTCTAGAGTCCCATAAAATCACTGTAAGCGTTCGTCAAACAAGAGGTCTCGATGCAAATGCAGCTTGTGAAGTTCCTTACTATTTCCTATTCTACCAACTTCATTATGTTGCATCCACCTGGAGGCTGGAAGAGCCAATTTTTTGTGGGGGCAAAGGCACCTCAAGGAAGCTTGATAGTGATGGATATGAAGAATGGAGGGGCAGCCATCACATCCAGGTCTGCTTGTTCTATACTCTAAATTCACAAGTTGATGTACATTGTTGCGAAGCTAAATTTGAGATACAGTGGAGCATTGAGGGGGGATCGGATCGTGCATTTATCGAGTCTTCTTGTTTCGAGAGTTCACAGAAATCAGATCGAGGGAAGATTCTCTCTTCGCATTCTCTCTTCTTCCTTCTCTTTTCTTCAGGTCAAAACATGAGAAGATACAGTCCACCATACCATAGTCCTCCAAGAAGAGGATACGGTGGTCGTGGAAGAAGCCCCCCGGGTAGGGGTTATGGTGGTGGTGGAGGTGGAGGTGGCGGCGGGTATGGAAGACGAAGGGAACAACCTCATGGTAGCCTTCTGGTTAGAAATATTCCTATGGATTGCAGGCCAGAGGAGCTTAGAGCGCCATTTGAGAGGTTTGGACTTGTTCGAGATGTGTATATTCCAAAGGACTATTACACAGGTGATCCTCGAGGATTTGCGTTTGTGGAGTTTGTTGATCCTTATGAGGCTTCTGAAGCTCAGTACCATATGAATGGGAAAAAATTTGCTGGTAGGGAGATTACTGTGGTCCTTGCTGCAGAGTCGAGGAAGAGGCCAGAACAGATGCGGCAAAGGAGTAGAAGGGGACCATCTGGCTATGGTGGACGCCGTTCTCATTATGGGCGTTCTAGATCTCGTTCAGTATCCAGATCACGCTCCCCTCGCCATCCGTCGGGTTCAAGAAGTAGATATCGATCAAGGTCCTACTCTCCTGCTCCGAGATGGCGAGGTGACTATTCTGTTTCCCCTGGTAGAAGGCATGCAGATTACCCAGAATCACCCAGAGGTGCTCCTCGTGAGCGAGACGGTGAGAGGAGTCGACAAGTATATTCTCCTGGTTATGATAATGCTGATGACCACGATCGCAATGGAAATGGAAATGGATATCATGACAAGTCTGCATTTGAAGGGGAGGATGCACGAGCTAATTGGAGGTCGTCTCCTGGTAGAACATCAAGATCCCCTTCGGGGTCCCGATCCCGCTCTGCTGATGCGTCCCCCAGACATGGTAGATGA

Protein sequence

MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSPVYQSVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKDVQIGQRMITISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDCRDYFLQTNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRPYKKAVMAFVAALESHKITVSVRQTRGLDANAACEVPYYFLFYQLHYVASTWRLEEPIFCGGKGTSRKLDSDGYEEWRGSHHIQVCLFYTLNSQVDVHCCEAKFEIQWSIEGGSDRAFIESSCFESSQKSDRGKILSSHSLFFLLFSSGQNMRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNADDHDRNGNGNGYHDKSAFEGEDARANWRSSPGRTSRSPSGSRSRSADASPRHGR

Homology

[Close]

BLAST of Lsi04G008760 vs. ExPASy Swiss-Prot
Match: Q2JRQ8 (Probable dual-specificity RNA methyltransferase RlmN OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=rlmN PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.3e-99
Identity = 189/342 (55.26%), Postives = 243/342 (71.05%), Query Frame = 0


Query: 49  PKVLIGLSDQELQQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGW 108
           P  L+G S   L+  AV+ GQ  YRG+QLH  +Y + ++ ++E T  P A+R  LQE  +
Sbjct: 5   PLPLLGQSLAALKDWAVEQGQPAYRGQQLHTWLYHKGIRSLQEVTVFPKAWREALQE--Y 64

Query: 109 RVGRSPVYQSVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPL 168
            VGRS V Q + + DGTVK LL+L D  LIETVGIP        + RLT C+SSQVGCP+
Sbjct: 65  PVGRSQVVQRIESRDGTVKFLLQLADGELIETVGIPT-------ARRLTVCVSSQVGCPM 124

Query: 169 RCSFCATGKGGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRC 228
            C+FCATGK G+ RNL+ HEI++QV  +++ F RRV++VVFMGMGEP+LN   +++A R 
Sbjct: 125 ACNFCATGKMGYRRNLKLHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRS 184

Query: 229 LNKDVQIGQRMITISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLE 288
           LN+D+ IGQR IT+STVGVP  I  LA   LQ TLAVSLHAPNQ+LR+ ++PSA  YPL+
Sbjct: 185 LNQDIGIGQRHITLSTVGVPRQIPWLAQQDLQITLAVSLHAPNQELRQQLIPSAAHYPLD 244

Query: 289 AIMKDCRDYFLQTNRRVSFEYALLAGVNDAVEHAVELAKLLH---EWGGGYHVNLIPFNP 348
           A+++DCRDY L + RR+SFEY LLAGVND   HA +LA LL    + G   HVNLIP+NP
Sbjct: 245 ALIQDCRDYMLCSGRRISFEYTLLAGVNDLPIHARQLAHLLRQASQAGARLHVNLIPYNP 304

Query: 349 VEGSEYQRPYKKAVMAFVAALESHKITVSVRQTRGLDANAAC 388
           +  ++YQRP+   V  FV  LE H + VSVRQTRGLD+NAAC
Sbjct: 305 IAEADYQRPHPTRVAEFVRLLEEHHVQVSVRQTRGLDSNAAC 337

[Close]

BLAST of Lsi04G008760 vs. ExPASy Swiss-Prot
Match: Q2JMN2 (Probable dual-specificity RNA methyltransferase RlmN OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=rlmN PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.3e-97
Identity = 186/342 (54.39%), Postives = 239/342 (69.88%), Query Frame = 0


Query: 49  PKVLIGLSDQELQQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGW 108
           P  L+G S   L+  AV  GQ  YRG+QLH  IY++ ++ +E+ T  P A+R  +Q   +
Sbjct: 5   PIPLLGQSLSALKDWAVAQGQPAYRGQQLHAWIYQKGIRSLEQVTVFPRAWREAVQ--SY 64

Query: 109 RVGRSPVYQSVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPL 168
            VGRS + Q   A DGTVK LL L D +LIETVGIP        + RLT C+SSQVGCP+
Sbjct: 65  PVGRSRIVQRTEARDGTVKFLLGLADGQLIETVGIPT-------AKRLTVCVSSQVGCPM 124

Query: 169 RCSFCATGKGGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRC 228
            C FCATGK G+ RNL+ HEI++QV  +++ F RRV++VVFMGMGEP+LN   +++A R 
Sbjct: 125 ACDFCATGKMGYRRNLELHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRS 184

Query: 229 LNKDVQIGQRMITISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLE 288
           LN+D+ IGQR IT+STVGVP  I  LA   LQ TLAVSLHAPNQ LR+ ++PSA  YPL+
Sbjct: 185 LNQDIGIGQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHAPNQDLRQRLIPSASHYPLD 244

Query: 289 AIMKDCRDYFLQTNRRVSFEYALLAGVNDAVEHAVELAKLLHE---WGGGYHVNLIPFNP 348
            +++DCRDY L+T RRVSFEY LL+GVND   HA +LA+LL +    G   HVNLIP+NP
Sbjct: 245 TLIQDCRDYMLRTGRRVSFEYTLLSGVNDLPIHARQLAQLLQQASRSGVQLHVNLIPYNP 304

Query: 349 VEGSEYQRPYKKAVMAFVAALESHKITVSVRQTRGLDANAAC 388
           +  ++YQRP+   V  FV  LE H++  +VRQTRGLD NAAC
Sbjct: 305 ISEADYQRPHPTRVREFVRQLEQHQVRATVRQTRGLDGNAAC 337

[Close]

BLAST of Lsi04G008760 vs. ExPASy Swiss-Prot
Match: B0C9F4 (Probable dual-specificity RNA methyltransferase RlmN OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rlmN PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.6e-96
Identity = 183/343 (53.35%), Postives = 240/343 (69.97%), Query Frame = 0


Query: 45  SPEAPKVLIGLSDQELQQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQ 104
           S E+   L+G S  +L   A  + Q  YRG+Q+HQ IY++ V  + + T LP  +R ++ 
Sbjct: 6   SVESIPPLLGASKAQLTHWAQTYQQPAYRGQQVHQWIYQKGVHSLSDITVLPKQWRTEI- 65

Query: 105 EAGWRVGRSPVYQSVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQV 164
            A   VGRS ++    A DGTVK LLKL D ++IETVGIP +        RLT C+SSQV
Sbjct: 66  -ADIPVGRSQIHHRSAAQDGTVKYLLKLADGQIIETVGIPTQK-------RLTVCVSSQV 125

Query: 165 GCPLRCSFCATGKGGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLE 224
           GCP+ C FCATGKG + RNL  HEIV+QV  +++ F +RV NVVFMGMGEP+LN++ +L 
Sbjct: 126 GCPMGCDFCATGKGEYQRNLACHEIVDQVLTVQEDFQQRVGNVVFMGMGEPLLNLEQVLA 185

Query: 225 AHRCLNKDVQIGQRMITISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKA 284
           A R LN+DV IGQR +T+STVG+P  I +LA H+LQ TLAVSLHA NQ++R  +VPSAK 
Sbjct: 186 AVRSLNQDVGIGQRSLTVSTVGIPKQILKLAQHQLQITLAVSLHASNQRIRTQLVPSAKH 245

Query: 285 YPLEAIMKDCRDYFLQTNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFN 344
           YPLE ++KDCR Y  QT RRV+FEY +L+GVND  EHA+ELA   H  G   HVNLIP+N
Sbjct: 246 YPLEKLLKDCRAYVTQTGRRVTFEYIVLSGVNDQTEHALELAH--HLRGFQSHVNLIPYN 305

Query: 345 PVEGSEYQRPYKKAVMAFVAALESHKITVSVRQTRGLDANAAC 388
           P+   +YQRP +K +  F+ +L+S  IT S+R++RGLD +AAC
Sbjct: 306 PISEVDYQRPTQKQLQQFLNSLQSQHITASIRRSRGLDKDAAC 337

[Close]

BLAST of Lsi04G008760 vs. ExPASy Swiss-Prot
Match: Q8DG98 (Probable dual-specificity RNA methyltransferase RlmN OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rlmN PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.7e-95
Identity = 181/337 (53.71%), Postives = 234/337 (69.44%), Query Frame = 0


Query: 51  VLIGLSDQELQQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRV 110
           VL+G S  EL+      GQ  YRG+QLHQ +Y++  + ++E T  P  +R  L +    +
Sbjct: 2   VLLGRSAAELKAWVEAQGQPGYRGQQLHQWLYRKGARSLQEITVFPKQWRAALADV--EI 61

Query: 111 GRSPVYQSVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRC 170
           GRS +     A DGTVKLLL L D   IETVGIP  D       RLT C+SSQVGCP+ C
Sbjct: 62  GRSEIRYRHDAQDGTVKLLLALADGETIETVGIPSSD-------RLTVCVSSQVGCPMAC 121

Query: 171 SFCATGKGGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLN 230
            FCATGKGG+ RNL  HEI++QV  I+    RRV++VVFMGMGEP+LN+  +L+A  CLN
Sbjct: 122 DFCATGKGGYRRNLACHEILDQVLTIQSEMGRRVSHVVFMGMGEPLLNLPAVLQAITCLN 181

Query: 231 KDVQIGQRMITISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAI 290
           +D+ IGQR ITISTVG+P  I+RLA H+LQ+TLAVSLHAPNQ LRE ++PSAK YPL  +
Sbjct: 182 RDIGIGQRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPNQALREQLIPSAKHYPLSQL 241

Query: 291 MKDCRDYFLQTNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSE 350
           + DCR Y  QT RR++FEY +LAGVND  +HA ELA+LL   G   HVNLIP+NP+  + 
Sbjct: 242 IADCRAYVQQTGRRITFEYTVLAGVNDRPQHAEELAQLLR--GFQSHVNLIPYNPIAEAA 301

Query: 351 YQRPYKKAVMAFVAALESHKITVSVRQTRGLDANAAC 388
           YQRP  + +  F++ L++  +T S+R++RGLD  AAC
Sbjct: 302 YQRPTDQHLRQFLSQLQALGVTASIRRSRGLDRQAAC 327

[Close]

BLAST of Lsi04G008760 vs. ExPASy Swiss-Prot
Match: Q7NIV3 (Probable dual-specificity RNA methyltransferase RlmN OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=rlmN PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.1e-94
Identity = 181/336 (53.87%), Postives = 233/336 (69.35%), Query Frame = 0


Query: 52  LIGLSDQELQQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVG 111
           L+G S +EL+      GQ  YR +QLH+ +Y+R V+ + E T+ P A+R  +      VG
Sbjct: 5   LLGQSAEELRIWVESQGQPAYRAQQLHRWLYQRGVRSLMEITDWPKAWREQVHSV--PVG 64

Query: 112 RSPVYQSVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCS 171
           RS V +   A+DGT+K LL   D   +ETVGIP  +       RLT C+SSQVGCP+ C 
Sbjct: 65  RSQVVRQSAAADGTIKYLLAGADGETVETVGIPAAE-------RLTVCVSSQVGCPMACR 124

Query: 172 FCATGKGGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNK 231
           FCATG+ GF+RNL  HEIV+QV  +++ F RRV++VVFMGMGEP+LN+  +++A R LN 
Sbjct: 125 FCATGQSGFARNLGVHEIVDQVLTVQEGFGRRVSHVVFMGMGEPLLNLGAVVQALRVLNG 184

Query: 232 DVQIGQRMITISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIM 291
           D+ IGQR IT+STVGVP  I+RL ++KLQ TLAVSLHAPNQ LR  ++P+A+ YP+E ++
Sbjct: 185 DIGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHAPNQDLRLKLIPTAQHYPIEELL 244

Query: 292 KDCRDYFLQTNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEY 351
           +DCRDY   TNRRVSFEY LLAG+ND   HA ELA +L   G   HVNLIP+NP+EG EY
Sbjct: 245 EDCRDYVETTNRRVSFEYTLLAGINDEPHHARELAAILR--GFQSHVNLIPYNPIEGVEY 304

Query: 352 QRPYKKAVMAFVAALESHKITVSVRQTRGLDANAAC 388
           +RP +  V AF   L  HKI  SVR TRGL+  AAC
Sbjct: 305 ERPGEARVRAFERELVRHKIAASVRHTRGLEEAAAC 329

[Close]

BLAST of Lsi04G008760 vs. ExPASy TrEMBL
Match: A0A1Q3DDN4 (RRM_1 domain-containing protein/Radical_SAM domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_33777 PE=3 SV=1)

HSP 1 Score: 938.7 bits (2425), Expect = 1.6e-269
Identity = 524/789 (66.41%), Postives = 592/789 (75.03%), Query Frame = 0


Query: 1   MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQEL 60
           MIAISMAL+  VCS S+ARA   R  AA+ SRN S S+  P+RA+   P VL+G+ + EL
Sbjct: 1   MIAISMALLQHVCSGSLARA-AVRPSAAIQSRNHS-SVKVPSRATHVDPNVLLGMCESEL 60

Query: 61  QQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSPVYQSVT 120
           QQLA+D GQ+ YRGKQLH LIYKRKV +I +F  LP +FRNDL E GWR+GRSP+YQ+VT
Sbjct: 61  QQLAIDLGQQSYRGKQLHHLIYKRKVTDIHDFCQLPQSFRNDLVEGGWRIGRSPIYQTVT 120

Query: 121 ASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCATGKGGF 180
           A+DGT+KLLLKL+DNRLIETVGIPV D+  KGSVRLTAC+SSQVGCPLRCSFCATGKGG+
Sbjct: 121 AADGTIKLLLKLEDNRLIETVGIPVLDE--KGSVRLTACVSSQVGCPLRCSFCATGKGGY 180

Query: 181 SRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKDVQIGQRMI 240
           SRNLQRHEIVEQV AIED+F  RVTNVVFMGMGEPMLN+K +LEAHRCLNKDVQIGQRMI
Sbjct: 181 SRNLQRHEIVEQVLAIEDVFQHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMI 240

Query: 241 TISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDCRDYFLQ 300
           TISTVGVPNTIK+LASHKLQSTLAVSLHAPNQKLRETIVPSAK+YPL+AIM DC+DYFLQ
Sbjct: 241 TISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDAIMMDCKDYFLQ 300

Query: 301 TNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRPYKKAVM 360
           T+RRVSFEYALLAGVND  +HA ELA+LLH++G  YHVNLIPFNP+EGSEYQRP+KKAV 
Sbjct: 301 TSRRVSFEYALLAGVNDVTDHAAELAELLHKYGHNYHVNLIPFNPIEGSEYQRPHKKAVQ 360

Query: 361 AFVAALESHKITVSVRQTRGLDANAACEVPYYFLFYQLHYVASTWRLEEPIFCGGKGTSR 420
            FVA LESHK+ VSVRQTRGLDA+AAC         QL         + P+         
Sbjct: 361 TFVAVLESHKVAVSVRQTRGLDASAACG--------QLRNKFQ----KSPLLTNSN---- 420

Query: 421 KLDSDGYEEWRGSHHIQVCLFYTLNSQVDVHCCEAKFEIQWSIEGGSDRAFIESSCFESS 480
                                  L SQ DV           ++  G              
Sbjct: 421 ----------------------NLESQADV-----------ALACGI------------- 480

Query: 481 QKSDRGKILSSHSLFFLLFSSGQNMRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGG 540
                                   MRRYSPPY+SPPRRGYGGRGRSPP RGY     GGG
Sbjct: 481 ------------------------MRRYSPPYYSPPRRGYGGRGRSPPRRGY-----GGG 540

Query: 541 GGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEF 600
           GGYGRR+EQ HGSLLVRNIP+DCR EELR PFER+G VRDVYIPKDYYTG+PRGFAFV+F
Sbjct: 541 GGYGRRKEQNHGSLLVRNIPLDCRSEELRVPFERYGAVRDVYIPKDYYTGEPRGFAFVQF 600

Query: 601 VDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGYGGRR-SHYGR 660
           VDPYEA+EAQ+HMNG+ FAGREI+VV+AAESRKRPE+MRQR+R RGP  YGGR+ S+YGR
Sbjct: 601 VDPYEATEAQHHMNGRTFAGREISVVVAAESRKRPEEMRQRTRVRGP--YGGRQSSYYGR 660

Query: 661 SRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERD 720
           SRSRSV  S SP  PSGSRSRYRSRSYSPAPR RGDYS+SP RRHAD+P SPRG P ER 
Sbjct: 661 SRSRSV--SHSPPRPSGSRSRYRSRSYSPAPRRRGDYSLSPNRRHADHPPSPRGPPHERG 688

Query: 721 GERSRQVYSPGYDNADDHDRNGNGNGYHDKSAFEGEDARANWRSSPGRTSRSPSGSRSRS 780
           G+ + + YSPGY N  D D++ N NGY  +S +E E+ RA WRS  GR SRSPSGSRSRS
Sbjct: 721 GDHNGRSYSPGYGN--DADQDQNVNGYGKRSMYESEETRARWRSPSGRASRSPSGSRSRS 688

Query: 781 ADASPRHGR 788
           AD SPR  R
Sbjct: 781 ADLSPRRSR 688

[Close]

BLAST of Lsi04G008760 vs. ExPASy TrEMBL
Match: A0A6J5U5C4 (RRM domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS17090 PE=3 SV=1)

HSP 1 Score: 894.4 bits (2310), Expect = 3.4e-256
Identity = 512/791 (64.73%), Postives = 592/791 (74.84%), Query Frame = 0


Query: 1   MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQEL 60
           M A S +LI +VCS  +ARA R R +A V S NLST+   P++A     +VL+GLS+ EL
Sbjct: 2   MTATSSSLIQRVCSVPLARAVRTRAMAVV-SMNLSTT-PAPSQALRADSRVLLGLSEPEL 61

Query: 61  QQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSPVYQSVT 120
           QQLA+D  Q+ YRGKQLH LIYKRK+K+I++F+ +PLAFRN+L+EAGW+VGRSP+YQSVT
Sbjct: 62  QQLALDLKQQSYRGKQLHHLIYKRKIKDIQDFSQVPLAFRNELEEAGWKVGRSPIYQSVT 121

Query: 121 ASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCATGKGGF 180
           A+DGTVKLL+KL+DNRLIETVGIPV+D+  KG +RLTAC+SSQVGCPLRCSFCATGKGGF
Sbjct: 122 AADGTVKLLIKLEDNRLIETVGIPVKDE--KGVMRLTACVSSQVGCPLRCSFCATGKGGF 181

Query: 181 SRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKDVQIGQRMI 240
           SRNL  HEIVEQV AIE+IFN RVTNVVFMGMGEPM+N+K +L AH+CLNKDVQIGQRMI
Sbjct: 182 SRNLNMHEIVEQVLAIEEIFNHRVTNVVFMGMGEPMMNLKSVLAAHQCLNKDVQIGQRMI 241

Query: 241 TISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDCRDYFLQ 300
           TISTVGVPNTIK+LASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPL A+MKDCRDYF++
Sbjct: 242 TISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLSALMKDCRDYFVE 301

Query: 301 TNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRPYKKAVM 360
           T+RRVSFEYALLAGVNDAVEHAVELA+LLHEWG GYHVNLIPFNP+EGSEY+RP KKAV 
Sbjct: 302 TSRRVSFEYALLAGVNDAVEHAVELAELLHEWGRGYHVNLIPFNPIEGSEYRRPSKKAVQ 361

Query: 361 AFVAALESHKITVSVRQTRGLDANAACEVPYYFLFYQLHYVASTWRLEEPIFCGGKGTSR 420
           AF AALES+++TVS RQTRGLDA+AAC         QL         + P+         
Sbjct: 362 AFAAALESNRVTVSTRQTRGLDADAACG--------QLRNKFQ----KSPL--------- 421

Query: 421 KLDSDGYEEWRGSHHIQVCLFYTLNSQVDV-HCCEAKFEIQWSIEGGSDRAFIESSCFES 480
             DSD  +    S      +  T +  V V     +  ++ + +  G             
Sbjct: 422 PTDSDNLQPEEDS------VLDTTHFHVPVPSSARSLMKVVFKVGAG------------- 481

Query: 481 SQKSDRGKILSSHSLFFLLFSSGQNMRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGG 540
                       H L  LL +    MRRYSP Y+SPPRR YGG          GGGGG G
Sbjct: 482 -----------LHHL-LLLVALVSRMRRYSPQYYSPPRRSYGGG---------GGGGGRG 541

Query: 541 GGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVE 600
                RR+EQ  GSLLVRNIP+DCRPEELR PFER+GLVRDVYIPKDYYTG+PRGFAFV+
Sbjct: 542 RSPPRRRKEQNSGSLLVRNIPLDCRPEELRVPFERYGLVRDVYIPKDYYTGEPRGFAFVQ 601

Query: 601 FVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGYGGRR-SHYG 660
           FVD YEA+EAQYHMNGK FAGREI+VV+AAE+RKRPE+MRQR+R RGPS +GGRR S+YG
Sbjct: 602 FVDSYEAAEAQYHMNGKIFAGREISVVVAAETRKRPEEMRQRTRVRGPSEHGGRRSSYYG 661

Query: 661 RSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRER 720
           RSR    SRSRSP +PS SRSRYRSRSYSPAPR RGD SVSP RR  D+P SPR  P ER
Sbjct: 662 RSR----SRSRSPHYPSSSRSRYRSRSYSPAPRRRGD-SVSPSRRRRDHPRSPRDLPLER 719

Query: 721 DGERSRQVYSPGYDNADDHDRNGNGNGYHDKSAFEGEDARANWRS-SPGRTSRSPSGSRS 780
           D +  R+ YSPGYDN    + N   +GY  K   E +D R +WRS SPGR SRSPSGSRS
Sbjct: 722 DADHDRRPYSPGYDNGAGPNEN---DGYEKKPMHEDKDGRGHWRSPSPGRASRSPSGSRS 719

Query: 781 RSADASPRHGR 788
           RSA+ SPR  R
Sbjct: 782 RSAELSPRRSR 719

[Close]

BLAST of Lsi04G008760 vs. ExPASy TrEMBL
Match: A0A498JI25 (RRM domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024151 PE=3 SV=1)

HSP 1 Score: 861.7 bits (2225), Expect = 2.4e-246
Identity = 522/873 (59.79%), Postives = 612/873 (70.10%), Query Frame = 0


Query: 1   MIAISMALIHQVCSPSVARAFRPRCVAA------VPSRNLSTSISPPARASPEAPKVLIG 60
           M A S +LI +VC+  +ARA R R + A        S   +T+ + P+ A    P+VL+G
Sbjct: 2   MTASSTSLIQRVCAVPLARAARTRAMVAASMNMSTTSTTTTTTTTAPSLAKRADPQVLLG 61

Query: 61  LSDQELQQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSP 120
           LS+ ELQQLA+DF Q+ YRGKQLH LIYKRK+K+I++F  +PLAFRN+L+EAGW+VGRSP
Sbjct: 62  LSEPELQQLAIDFSQQGYRGKQLHHLIYKRKIKDIQDFNQVPLAFRNELEEAGWKVGRSP 121

Query: 121 VYQSVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCA 180
           +YQSVTA+DGTVKLL+KL+DNRLIETVGIPV+D+  KG +RLTAC+SSQVGCPLRCSFCA
Sbjct: 122 IYQSVTAADGTVKLLIKLEDNRLIETVGIPVKDE--KGVMRLTACVSSQVGCPLRCSFCA 181

Query: 181 TGKGGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKDVQ 240
           TGKGGFSRNL+RHEIVEQV AIE+IFN RVTNVVFMGMGEPM+N+K +LEAH+CLNKD+Q
Sbjct: 182 TGKGGFSRNLKRHEIVEQVLAIEEIFNHRVTNVVFMGMGEPMMNLKAVLEAHQCLNKDIQ 241

Query: 241 IGQRMITISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDC 300
           IGQRMITISTVGVPNTIK+LASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPL A+M+DC
Sbjct: 242 IGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLSALMRDC 301

Query: 301 RDYFLQTNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRP 360
           RDYF +T RRVSFEYALLAGVNDAV+HAVELA+LLHEWG G HVNLIPFNP+EGSEY+RP
Sbjct: 302 RDYFTETGRRVSFEYALLAGVNDAVDHAVELAELLHEWGRGSHVNLIPFNPIEGSEYKRP 361

Query: 361 YKKAVMAFVAALESHKITVSVRQTRGLDANAAC--------------------------- 420
            KKAV AF AALE++K+TVS RQTRGLDA+AAC                           
Sbjct: 362 SKKAVQAFAAALENNKVTVSTRQTRGLDADAACGQLRNKFQKSPLPVDSDNLQTDEDAAV 421

Query: 421 EVPYYFLFYQLHYVA----------STWRLEEPIFCGGKGTSRKLDSDGYEEWRGSH--- 480
            V Y   + ++  V+          S    E P     K TS    SDG  E +      
Sbjct: 422 AVAYSEGWGEMFRVSDNAVMLVIYGSRRHKENPAQRPIKSTS----SDGVSEPKSRSCEP 481

Query: 481 ----HIQVCLFYTLNSQVDVHCCEAKFEIQWSIEGGSDRAFIESSCFESS----QKSDR- 540
                + + LF T++ Q        KF+IQ          F+  S   S+    Q++ R 
Sbjct: 482 ALKIRVAIRLFETVSLQ--------KFQIQ-------KVQFLRRSPVVSTINRLQETYRK 541

Query: 541 -GKIL----SSHSLFFLL--FSSGQ----NMRRYSPPYHSPPRRGYGGRGRSPPGRGYGG 600
            GK L     S S + +L     G     +MRRYSP Y+SPPRR YGG G        GG
Sbjct: 542 IGKTLIPTVVSSSCYVILKPIELGTFVVLDMRRYSPQYYSPPRRSYGGGG--------GG 601

Query: 601 GGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRG 660
           GGG G     RR+EQ +GSLLVRNIP+DCR EELRAPFER+G VRDVYIPKDYYTG+PRG
Sbjct: 602 GGGRGRSPPRRRKEQNNGSLLVRNIPLDCRAEELRAPFERYGEVRDVYIPKDYYTGEPRG 661

Query: 661 FAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGYGGRR 720
           FAF++FVD YEA+EAQYHMNGK FAGREI+VV+AAE+RKRPE+MRQR+R R PS +GGRR
Sbjct: 662 FAFIQFVDSYEAAEAQYHMNGKIFAGREISVVVAAETRKRPEEMRQRTRVREPSDHGGRR 721

Query: 721 -SHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYPESPRG 780
            S+YGRSR    SRSRSPR+PSGSRSRYRSRSYSP PR RGD S+SP RR  D P SPR 
Sbjct: 722 SSYYGRSR----SRSRSPRYPSGSRSRYRSRSYSPVPRRRGD-SISPSRRRRDNPRSPRD 781

Query: 781 APRERDGERSRQVYSPGYDNADDHDRNGNGNGYH------------------DKSAFEGE 788
            P  RDG+  R+ YSPGYDN      N NG+G H                   K   E +
Sbjct: 782 LPPVRDGD--RRPYSPGYDNV--AGPNDNGDGMHLNVMLIFYVGRVFLLCCCRKPMREEK 835

[Close]

BLAST of Lsi04G008760 vs. ExPASy TrEMBL
Match: A0A5N5LNU0 (RRM domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_012390 PE=4 SV=1)

HSP 1 Score: 786.2 bits (2029), Expect = 1.3e-223
Identity = 466/790 (58.99%), Postives = 546/790 (69.11%), Query Frame = 0


Query: 1   MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLS---TSISPPARASPEAPKVLIGLSD 60
           MIA SM+L+  VCS  +ARA RPR V  + SR+LS   +S S P+RAS   P VL+G+S+
Sbjct: 1   MIATSMSLLQHVCSVPIARAMRPRSVTVISSRSLSATTSSSSTPSRASQVDPHVLLGMSE 60

Query: 61  QELQQLAVDFGQEKYRGKQLHQ----LIYKRKV-KEIEEFTNLPLAFRNDLQEAGWRVGR 120
            ELQQ+A+D GQ +       Q    + Y   V      +  +PL FRNDLQEAGW+VGR
Sbjct: 61  PELQQVAIDLGQGRLFAIFFVQFCILVTYVSFVCAPFFSWELVPLVFRNDLQEAGWKVGR 120

Query: 121 SPVYQSVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSF 180
           SP++Q+VTA+DGTVKLL++L+DNRLIETVGIPVED+  KGS+RLTACISSQVGCPLRCSF
Sbjct: 121 SPIFQTVTAADGTVKLLIRLEDNRLIETVGIPVEDE--KGSMRLTACISSQVGCPLRCSF 180

Query: 181 CATGKGGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKD 240
           CATGKGGFSRNLQRHEIVEQV AIE+IF  RVTNVVFMGMGEPMLN+K +LEAHRCLNKD
Sbjct: 181 CATGKGGFSRNLQRHEIVEQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD 240

Query: 241 VQIGQRMITISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMK 300
           VQIGQRMITISTVGVPNTIK+LASHKLQSTLA+SLHAPNQKLRETIVPSAK+YPLEAIMK
Sbjct: 241 VQIGQRMITISTVGVPNTIKKLASHKLQSTLALSLHAPNQKLRETIVPSAKSYPLEAIMK 300

Query: 301 DCRDYFLQTNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQ 360
           DC++YFL+T+RRVSFEY LLA VND VEHA ELA+LLH+WG G+HVNLIPFNP++GS+Y+
Sbjct: 301 DCKEYFLETSRRVSFEYTLLAEVNDRVEHAKELAELLHQWGRGHHVNLIPFNPIQGSDYK 360

Query: 361 RPYKKAVMAFVAALESHKITVSVRQTRGLDANAACEVPYYFLFYQLHYVASTWRLEEPIF 420
           RPYKKAV AF A LES KITVSVRQTRGLDA+AAC         QL         + P+ 
Sbjct: 361 RPYKKAVQAFAAVLESRKITVSVRQTRGLDASAACG--------QLRNEFQ----KSPLV 420

Query: 421 CGGKGTSRKLDSDGYEEWRGSHHIQVCLFYTLNSQVDVHCCEAKFEIQWSIEGGSDRAFI 480
                    ++SD                 +L SQ +    + K E ++S+   S    +
Sbjct: 421 ---------INSD-----------------SLESQPENVASKTKIEAEYSL---SLELLV 480

Query: 481 ESSCFESSQKSDRGKILSSHSLFFLLFSSGQNMRRYSPPYHSPPRRGYGGRGRSPPGRGY 540
           +    E                  LLF  G  MR YSPP++S PRRGYGGR RSPP RGY
Sbjct: 481 DLVKIEDQ----------------LLFLIGYVMRGYSPPHYSSPRRGYGGRERSPPRRGY 540

Query: 541 GGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG-- 600
                GGGGGYGR +EQ  GSLLVRNIP+DCRPEELR  FERFG VRDVYIPKDY TG  
Sbjct: 541 -----GGGGGYGRSKEQNSGSLLVRNIPLDCRPEELRGLFERFGAVRDVYIPKDYRTGYS 600

Query: 601 ------------------------DPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVV 660
                                   +PRGF FV+FVDPY+A EAQ+HMNG+ F  R++ VV
Sbjct: 601 LEPLKEPILSSSRLTDDLVSMNVREPRGFGFVQFVDPYDAMEAQHHMNGQVFGKRQMFVV 660

Query: 661 LAAESRKRPEQMRQRSR-RGPSGYGGRRSH-----------YGRSRSRSVSRSRSPRHPS 720
           +AAE+RKRPE+MR R+R  GPS YGGR S+            GRS SRS+SRS  P H  
Sbjct: 661 VAAETRKRPEEMRHRARVSGPSDYGGRTSYSQLITALYQYASGRSHSRSLSRSPHPYH-- 720

Query: 721 GSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDNAD 745
            SRSRYRSRSYSPA + R +YS SP RR+AD+   PRG P ER+G    + YSP Y   D
Sbjct: 721 ASRSRYRSRSYSPALKQR-NYSPSPERRYADHLRFPRGPPPEREGGHRCRSYSPCYGRGD 723

[Close]

BLAST of Lsi04G008760 vs. ExPASy TrEMBL
Match: A0A1R3JQ54 (RRM domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_15056 PE=4 SV=1)

HSP 1 Score: 767.7 bits (1981), Expect = 4.7e-218
Identity = 460/746 (61.66%), Postives = 533/746 (71.45%), Query Frame = 0


Query: 55  LSDQELQQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSP 114
           +S+QELQQLAV+FGQ  + G  L  ++YK+          +P AFRN L EAGWR+GRSP
Sbjct: 1   MSEQELQQLAVEFGQLTF-GIFL-GVLYKK----------VPQAFRNALIEAGWRLGRSP 60

Query: 115 VYQSVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCA 174
           +YQSVTA+DGTVKLL+KL+DNRLIETVGIPV+D+  KGS+RLTAC+SS            
Sbjct: 61  IYQSVTAADGTVKLLIKLEDNRLIETVGIPVQDE--KGSMRLTACVSS------------ 120

Query: 175 TGKGGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKDVQ 234
                            QV AIEDIF  RVTNVVFMGMGEPMLN+K +L+AHRCLNKDVQ
Sbjct: 121 -----------------QVLAIEDIFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDVQ 180

Query: 235 IGQRMITISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDC 294
           IGQRMITISTVGVPNTIK+LASHKLQSTLAVSLHAPNQ+LRE IVPSAK+YPL+AIMKDC
Sbjct: 181 IGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQELREMIVPSAKSYPLDAIMKDC 240

Query: 295 RDYFLQTNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRP 354
           RDYF +T+RRV+FEYALLAGVND+VE A ELA+LLHEWG G+HVNLIPFNP+EGSEY+RP
Sbjct: 241 RDYFAETSRRVTFEYALLAGVNDSVEQAKELAELLHEWGRGHHVNLIPFNPIEGSEYRRP 300

Query: 355 YKKAVMAFVAALESHKITVSVRQTRGLDANAACEVPYYFLFYQLHYVASTWRLEEPIFCG 414
           Y+KAV AF +ALES KIT SVRQTRGLDA+AAC             + + ++ ++P+   
Sbjct: 301 YRKAVSAFASALESRKITTSVRQTRGLDASAAC-----------GQLRNNFQ-KKPLL-- 360

Query: 415 GKGTSRKLDSDGYEEWRGSHHIQVCLFYTLNSQVDVHCCEAKFEIQWSIEGGSDRAFIES 474
                   +SDG +                 SQ +    + +  + +   G ++      
Sbjct: 361 -------TESDGEQ-----------------SQSNAGLFDTR-ALPFMYHGATE------ 420

Query: 475 SCFESSQKSDRGKILSSHSLFFLLFSSGQNMRRYSPPYHSPPRRGYGGRGRSPPGRGY-- 534
               S QKS     LSS S    L S    MRRYSP Y+SPPRRGYGGR RSPP RGY  
Sbjct: 421 --IRSKQKSI--LFLSSVS---NLSSRVFRMRRYSPQYYSPPRRGYGGRERSPPRRGYGG 480

Query: 535 -GGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGD 594
            GGGGGGGGGGYGRRREQ HGSLLVRNIP+DCRPEELR PFER+GLVRDVYIPKDYYTG+
Sbjct: 481 GGGGGGGGGGGYGRRREQNHGSLLVRNIPLDCRPEELRIPFERYGLVRDVYIPKDYYTGE 540

Query: 595 PRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR--RGPSGY 654
           PRGFAFV+FVD Y+A+EAQ  MNGK FAGREI+VV+AAE+RKRPE+MR +SR  RGPSGY
Sbjct: 541 PRGFAFVQFVDSYDAAEAQRRMNGKIFAGREISVVVAAETRKRPEEMRHKSRGVRGPSGY 600

Query: 655 GGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYPES 714
           GGR S+YGRSRSRS+  S +P HPSGSR RYRSRSYSP PR RGDYSVSPGRR AD P S
Sbjct: 601 GGRSSYYGRSRSRSM--SPAPHHPSGSRGRYRSRSYSPVPRRRGDYSVSPGRRPADNPRS 642

Query: 715 PRGAPRERDGERSRQVYSPGYDNADDHDRNGNGNGYHDKSAFEGEDARANWRSSPG---R 774
           PRG P ERDG  + + YSPGY++A+        N +  K   + E  RA WR  P    R
Sbjct: 661 PRGPPEERDGYFNHRPYSPGYEHAE-------ANNFDVKPPSDPEAERAGWRLRPSPRRR 642

Query: 775 TSRSPSGSRSRSA-----DASPRHGR 788
            SRSPSGSRSRSA     D SPR  R
Sbjct: 721 VSRSPSGSRSRSADLHLPDLSPRRSR 642

[Close]

BLAST of Lsi04G008760 vs. NCBI nr
Match: KAF3952096.1 (hypothetical protein CMV_022321 [Castanea mollissima])

HSP 1 Score: 966.8 bits (2498), Expect = 1.1e-277
Identity = 543/797 (68.13%), Postives = 618/797 (77.54%), Query Frame = 0


Query: 6   MALIHQVCSPSVARAFRPRCVAAVPS-RNLSTSI---------SPPARASPEAPKVLIGL 65
           MAL+  VCS  +A A RPR +AAV S RNLS +I         S  ARAS     VL+G+
Sbjct: 1   MALVQHVCSAPLAGAARPRFLAAVISCRNLSITIRSSSSSSSSSSSARASQADSHVLLGM 60

Query: 66  SDQELQQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSPV 125
           S+QELQQ+A+DFGQ+ +RGKQLH LIYKRKVKEI++F+ LP AFRNDL+EAGW+VGRSP+
Sbjct: 61  SEQELQQVALDFGQQSFRGKQLHHLIYKRKVKEIQDFSQLPQAFRNDLEEAGWKVGRSPI 120

Query: 126 YQSVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCAT 185
           + +VTA DGT+KLL+KL+DNRLIETVGIPVED   KGSVRLTAC+SSQVGCPLRCSFCAT
Sbjct: 121 HNTVTAVDGTIKLLIKLEDNRLIETVGIPVEDA--KGSVRLTACVSSQVGCPLRCSFCAT 180

Query: 186 GKGGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKDVQI 245
           GKGGFSRNL++HEIVEQV AIE++F  RVTNVVFMGMGEPMLN+K +LEAH+CLNKDVQI
Sbjct: 181 GKGGFSRNLKKHEIVEQVLAIEELFKHRVTNVVFMGMGEPMLNLKSVLEAHQCLNKDVQI 240

Query: 246 GQRMITISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDCR 305
           GQRMITISTVGVPNTI++LASHKLQSTLAVSLHAPNQKLRE IVPSAK+YPL+AIMKDC+
Sbjct: 241 GQRMITISTVGVPNTIRKLASHKLQSTLAVSLHAPNQKLREAIVPSAKSYPLDAIMKDCK 300

Query: 306 DYFLQTNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRPY 365
           DY+L+T+RRVSFEYALLAGVND  EHAVELA+LLH+WG  YHVNLIPFNP+EGS+YQRP+
Sbjct: 301 DYYLETSRRVSFEYALLAGVNDKTEHAVELAELLHQWGRSYHVNLIPFNPIEGSDYQRPH 360

Query: 366 KKAVMAFVAALESHKITVSVRQTRGLDANAACEVPYYFLFYQLHYVASTWRLEEPIFCGG 425
           KKAVMAF AALES KITVS RQTRGLDA+AAC         QL         + P+    
Sbjct: 361 KKAVMAFAAALESRKITVSTRQTRGLDASAACG--------QLRNKFQ----KSPLL--- 420

Query: 426 KGTSRKLDSDGYEEWRGSHHIQVCLFYTLNSQVDVHCCEAKFEIQWSIEGGSDRAFIESS 485
                 LDS+                  L SQ D+       E + S++           
Sbjct: 421 ------LDSE-----------------DLQSQPDIAVAYLISEPEISLQA---------- 480

Query: 486 CFESSQKSDRGKILSSHSLFFLLFSS---GQNMRRYSPPYHSPPRRGYGGRGRSPPGRGY 545
                             L FLL SS   G  MRRYSP Y+SPPRR YGGRGRSPP RGY
Sbjct: 481 -----------------QLLFLLQSSSLTGSIMRRYSPSYYSPPRRAYGGRGRSPPRRGY 540

Query: 546 --GGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTG 605
             GGGGGGGGGGYGRR+EQ +GSLLVRNIP+DCRPEELR PFERFG VRDVYIPKDYYTG
Sbjct: 541 GGGGGGGGGGGGYGRRKEQ-NGSLLVRNIPLDCRPEELRVPFERFGAVRDVYIPKDYYTG 600

Query: 606 DPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGY 665
           +PRGFAFV+F+D YEASEAQYHMNGK FAGREI+VV+AAE+RKRPE+MRQR+R RGPSGY
Sbjct: 601 EPRGFAFVQFMDAYEASEAQYHMNGKIFAGREISVVVAAETRKRPEEMRQRTRVRGPSGY 660

Query: 666 GGRR-SHYGRSRSRSVSRSRS-PRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYP 725
           GG+R S+YGRSRSRS+SRSRS PR+PSGSR RYRSRSYSPAPR RGDYSVSP RRHAD+P
Sbjct: 661 GGQRSSYYGRSRSRSLSRSRSPPRYPSGSRGRYRSRSYSPAPRRRGDYSVSPSRRHADHP 720

Query: 726 ESPRGAPRERDGERSRQVYSPGYDNADDHDRNGNGNGYHDKSAFEGEDARANWRSSPGRT 785
            SPRG PRERD +  R+ YSPGY NA D     N NGY +K  ++ E+ R +WRSSP R 
Sbjct: 721 RSPRGPPRERDADH-RRSYSPGYANAADQ----NENGYREKPTYDAEEPRGHWRSSPVRA 724

[Close]

BLAST of Lsi04G008760 vs. NCBI nr
Match: GAV90368.1 (RRM_1 domain-containing protein/Radical_SAM domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 938.7 bits (2425), Expect = 3.2e-269
Identity = 524/789 (66.41%), Postives = 592/789 (75.03%), Query Frame = 0


Query: 1   MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQEL 60
           MIAISMAL+  VCS S+ARA   R  AA+ SRN S S+  P+RA+   P VL+G+ + EL
Sbjct: 1   MIAISMALLQHVCSGSLARA-AVRPSAAIQSRNHS-SVKVPSRATHVDPNVLLGMCESEL 60

Query: 61  QQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSPVYQSVT 120
           QQLA+D GQ+ YRGKQLH LIYKRKV +I +F  LP +FRNDL E GWR+GRSP+YQ+VT
Sbjct: 61  QQLAIDLGQQSYRGKQLHHLIYKRKVTDIHDFCQLPQSFRNDLVEGGWRIGRSPIYQTVT 120

Query: 121 ASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCATGKGGF 180
           A+DGT+KLLLKL+DNRLIETVGIPV D+  KGSVRLTAC+SSQVGCPLRCSFCATGKGG+
Sbjct: 121 AADGTIKLLLKLEDNRLIETVGIPVLDE--KGSVRLTACVSSQVGCPLRCSFCATGKGGY 180

Query: 181 SRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKDVQIGQRMI 240
           SRNLQRHEIVEQV AIED+F  RVTNVVFMGMGEPMLN+K +LEAHRCLNKDVQIGQRMI
Sbjct: 181 SRNLQRHEIVEQVLAIEDVFQHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMI 240

Query: 241 TISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDCRDYFLQ 300
           TISTVGVPNTIK+LASHKLQSTLAVSLHAPNQKLRETIVPSAK+YPL+AIM DC+DYFLQ
Sbjct: 241 TISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKSYPLDAIMMDCKDYFLQ 300

Query: 301 TNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRPYKKAVM 360
           T+RRVSFEYALLAGVND  +HA ELA+LLH++G  YHVNLIPFNP+EGSEYQRP+KKAV 
Sbjct: 301 TSRRVSFEYALLAGVNDVTDHAAELAELLHKYGHNYHVNLIPFNPIEGSEYQRPHKKAVQ 360

Query: 361 AFVAALESHKITVSVRQTRGLDANAACEVPYYFLFYQLHYVASTWRLEEPIFCGGKGTSR 420
            FVA LESHK+ VSVRQTRGLDA+AAC         QL         + P+         
Sbjct: 361 TFVAVLESHKVAVSVRQTRGLDASAACG--------QLRNKFQ----KSPLLTNSN---- 420

Query: 421 KLDSDGYEEWRGSHHIQVCLFYTLNSQVDVHCCEAKFEIQWSIEGGSDRAFIESSCFESS 480
                                  L SQ DV           ++  G              
Sbjct: 421 ----------------------NLESQADV-----------ALACGI------------- 480

Query: 481 QKSDRGKILSSHSLFFLLFSSGQNMRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGG 540
                                   MRRYSPPY+SPPRRGYGGRGRSPP RGY     GGG
Sbjct: 481 ------------------------MRRYSPPYYSPPRRGYGGRGRSPPRRGY-----GGG 540

Query: 541 GGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEF 600
           GGYGRR+EQ HGSLLVRNIP+DCR EELR PFER+G VRDVYIPKDYYTG+PRGFAFV+F
Sbjct: 541 GGYGRRKEQNHGSLLVRNIPLDCRSEELRVPFERYGAVRDVYIPKDYYTGEPRGFAFVQF 600

Query: 601 VDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGYGGRR-SHYGR 660
           VDPYEA+EAQ+HMNG+ FAGREI+VV+AAESRKRPE+MRQR+R RGP  YGGR+ S+YGR
Sbjct: 601 VDPYEATEAQHHMNGRTFAGREISVVVAAESRKRPEEMRQRTRVRGP--YGGRQSSYYGR 660

Query: 661 SRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERD 720
           SRSRSV  S SP  PSGSRSRYRSRSYSPAPR RGDYS+SP RRHAD+P SPRG P ER 
Sbjct: 661 SRSRSV--SHSPPRPSGSRSRYRSRSYSPAPRRRGDYSLSPNRRHADHPPSPRGPPHERG 688

Query: 721 GERSRQVYSPGYDNADDHDRNGNGNGYHDKSAFEGEDARANWRSSPGRTSRSPSGSRSRS 780
           G+ + + YSPGY N  D D++ N NGY  +S +E E+ RA WRS  GR SRSPSGSRSRS
Sbjct: 721 GDHNGRSYSPGYGN--DADQDQNVNGYGKRSMYESEETRARWRSPSGRASRSPSGSRSRS 688

Query: 781 ADASPRHGR 788
           AD SPR  R
Sbjct: 781 ADLSPRRSR 688

[Close]

BLAST of Lsi04G008760 vs. NCBI nr
Match: CAB4270797.1 (unnamed protein product [Prunus armeniaca] >CAB4301179.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 894.4 bits (2310), Expect = 6.9e-256
Identity = 512/791 (64.73%), Postives = 592/791 (74.84%), Query Frame = 0


Query: 1   MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQEL 60
           M A S +LI +VCS  +ARA R R +A V S NLST+   P++A     +VL+GLS+ EL
Sbjct: 2   MTATSSSLIQRVCSVPLARAVRTRAMAVV-SMNLSTT-PAPSQALRADSRVLLGLSEPEL 61

Query: 61  QQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSPVYQSVT 120
           QQLA+D  Q+ YRGKQLH LIYKRK+K+I++F+ +PLAFRN+L+EAGW+VGRSP+YQSVT
Sbjct: 62  QQLALDLKQQSYRGKQLHHLIYKRKIKDIQDFSQVPLAFRNELEEAGWKVGRSPIYQSVT 121

Query: 121 ASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCATGKGGF 180
           A+DGTVKLL+KL+DNRLIETVGIPV+D+  KG +RLTAC+SSQVGCPLRCSFCATGKGGF
Sbjct: 122 AADGTVKLLIKLEDNRLIETVGIPVKDE--KGVMRLTACVSSQVGCPLRCSFCATGKGGF 181

Query: 181 SRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKDVQIGQRMI 240
           SRNL  HEIVEQV AIE+IFN RVTNVVFMGMGEPM+N+K +L AH+CLNKDVQIGQRMI
Sbjct: 182 SRNLNMHEIVEQVLAIEEIFNHRVTNVVFMGMGEPMMNLKSVLAAHQCLNKDVQIGQRMI 241

Query: 241 TISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDCRDYFLQ 300
           TISTVGVPNTIK+LASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPL A+MKDCRDYF++
Sbjct: 242 TISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLSALMKDCRDYFVE 301

Query: 301 TNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRPYKKAVM 360
           T+RRVSFEYALLAGVNDAVEHAVELA+LLHEWG GYHVNLIPFNP+EGSEY+RP KKAV 
Sbjct: 302 TSRRVSFEYALLAGVNDAVEHAVELAELLHEWGRGYHVNLIPFNPIEGSEYRRPSKKAVQ 361

Query: 361 AFVAALESHKITVSVRQTRGLDANAACEVPYYFLFYQLHYVASTWRLEEPIFCGGKGTSR 420
           AF AALES+++TVS RQTRGLDA+AAC         QL         + P+         
Sbjct: 362 AFAAALESNRVTVSTRQTRGLDADAACG--------QLRNKFQ----KSPL--------- 421

Query: 421 KLDSDGYEEWRGSHHIQVCLFYTLNSQVDV-HCCEAKFEIQWSIEGGSDRAFIESSCFES 480
             DSD  +    S      +  T +  V V     +  ++ + +  G             
Sbjct: 422 PTDSDNLQPEEDS------VLDTTHFHVPVPSSARSLMKVVFKVGAG------------- 481

Query: 481 SQKSDRGKILSSHSLFFLLFSSGQNMRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGG 540
                       H L  LL +    MRRYSP Y+SPPRR YGG          GGGGG G
Sbjct: 482 -----------LHHL-LLLVALVSRMRRYSPQYYSPPRRSYGGG---------GGGGGRG 541

Query: 541 GGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVE 600
                RR+EQ  GSLLVRNIP+DCRPEELR PFER+GLVRDVYIPKDYYTG+PRGFAFV+
Sbjct: 542 RSPPRRRKEQNSGSLLVRNIPLDCRPEELRVPFERYGLVRDVYIPKDYYTGEPRGFAFVQ 601

Query: 601 FVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGYGGRR-SHYG 660
           FVD YEA+EAQYHMNGK FAGREI+VV+AAE+RKRPE+MRQR+R RGPS +GGRR S+YG
Sbjct: 602 FVDSYEAAEAQYHMNGKIFAGREISVVVAAETRKRPEEMRQRTRVRGPSEHGGRRSSYYG 661

Query: 661 RSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRER 720
           RSR    SRSRSP +PS SRSRYRSRSYSPAPR RGD SVSP RR  D+P SPR  P ER
Sbjct: 662 RSR----SRSRSPHYPSSSRSRYRSRSYSPAPRRRGD-SVSPSRRRRDHPRSPRDLPLER 719

Query: 721 DGERSRQVYSPGYDNADDHDRNGNGNGYHDKSAFEGEDARANWRS-SPGRTSRSPSGSRS 780
           D +  R+ YSPGYDN    + N   +GY  K   E +D R +WRS SPGR SRSPSGSRS
Sbjct: 722 DADHDRRPYSPGYDNGAGPNEN---DGYEKKPMHEDKDGRGHWRSPSPGRASRSPSGSRS 719

Query: 781 RSADASPRHGR 788
           RSA+ SPR  R
Sbjct: 782 RSAELSPRRSR 719

[Close]

BLAST of Lsi04G008760 vs. NCBI nr
Match: RXH94467.1 (hypothetical protein DVH24_024151 [Malus domestica])

HSP 1 Score: 861.7 bits (2225), Expect = 5.0e-246
Identity = 522/873 (59.79%), Postives = 612/873 (70.10%), Query Frame = 0


Query: 1   MIAISMALIHQVCSPSVARAFRPRCVAA------VPSRNLSTSISPPARASPEAPKVLIG 60
           M A S +LI +VC+  +ARA R R + A        S   +T+ + P+ A    P+VL+G
Sbjct: 2   MTASSTSLIQRVCAVPLARAARTRAMVAASMNMSTTSTTTTTTTTAPSLAKRADPQVLLG 61

Query: 61  LSDQELQQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSP 120
           LS+ ELQQLA+DF Q+ YRGKQLH LIYKRK+K+I++F  +PLAFRN+L+EAGW+VGRSP
Sbjct: 62  LSEPELQQLAIDFSQQGYRGKQLHHLIYKRKIKDIQDFNQVPLAFRNELEEAGWKVGRSP 121

Query: 121 VYQSVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCA 180
           +YQSVTA+DGTVKLL+KL+DNRLIETVGIPV+D+  KG +RLTAC+SSQVGCPLRCSFCA
Sbjct: 122 IYQSVTAADGTVKLLIKLEDNRLIETVGIPVKDE--KGVMRLTACVSSQVGCPLRCSFCA 181

Query: 181 TGKGGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKDVQ 240
           TGKGGFSRNL+RHEIVEQV AIE+IFN RVTNVVFMGMGEPM+N+K +LEAH+CLNKD+Q
Sbjct: 182 TGKGGFSRNLKRHEIVEQVLAIEEIFNHRVTNVVFMGMGEPMMNLKAVLEAHQCLNKDIQ 241

Query: 241 IGQRMITISTVGVPNTIKRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDC 300
           IGQRMITISTVGVPNTIK+LASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPL A+M+DC
Sbjct: 242 IGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLSALMRDC 301

Query: 301 RDYFLQTNRRVSFEYALLAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRP 360
           RDYF +T RRVSFEYALLAGVNDAV+HAVELA+LLHEWG G HVNLIPFNP+EGSEY+RP
Sbjct: 302 RDYFTETGRRVSFEYALLAGVNDAVDHAVELAELLHEWGRGSHVNLIPFNPIEGSEYKRP 361

Query: 361 YKKAVMAFVAALESHKITVSVRQTRGLDANAAC--------------------------- 420
            KKAV AF AALE++K+TVS RQTRGLDA+AAC                           
Sbjct: 362 SKKAVQAFAAALENNKVTVSTRQTRGLDADAACGQLRNKFQKSPLPVDSDNLQTDEDAAV 421

Query: 421 EVPYYFLFYQLHYVA----------STWRLEEPIFCGGKGTSRKLDSDGYEEWRGSH--- 480
            V Y   + ++  V+          S    E P     K TS    SDG  E +      
Sbjct: 422 AVAYSEGWGEMFRVSDNAVMLVIYGSRRHKENPAQRPIKSTS----SDGVSEPKSRSCEP 481

Query: 481 ----HIQVCLFYTLNSQVDVHCCEAKFEIQWSIEGGSDRAFIESSCFESS----QKSDR- 540
                + + LF T++ Q        KF+IQ          F+  S   S+    Q++ R 
Sbjct: 482 ALKIRVAIRLFETVSLQ--------KFQIQ-------KVQFLRRSPVVSTINRLQETYRK 541

Query: 541 -GKIL----SSHSLFFLL--FSSGQ----NMRRYSPPYHSPPRRGYGGRGRSPPGRGYGG 600
            GK L     S S + +L     G     +MRRYSP Y+SPPRR YGG G        GG
Sbjct: 542 IGKTLIPTVVSSSCYVILKPIELGTFVVLDMRRYSPQYYSPPRRSYGGGG--------GG 601

Query: 601 GGGGGGGGYGRRREQPHGSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRG 660
           GGG G     RR+EQ +GSLLVRNIP+DCR EELRAPFER+G VRDVYIPKDYYTG+PRG
Sbjct: 602 GGGRGRSPPRRRKEQNNGSLLVRNIPLDCRAEELRAPFERYGEVRDVYIPKDYYTGEPRG 661

Query: 661 FAFVEFVDPYEASEAQYHMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGYGGRR 720
           FAF++FVD YEA+EAQYHMNGK FAGREI+VV+AAE+RKRPE+MRQR+R R PS +GGRR
Sbjct: 662 FAFIQFVDSYEAAEAQYHMNGKIFAGREISVVVAAETRKRPEEMRQRTRVREPSDHGGRR 721

Query: 721 -SHYGRSRSRSVSRSRSPRHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYPESPRG 780
            S+YGRSR    SRSRSPR+PSGSRSRYRSRSYSP PR RGD S+SP RR  D P SPR 
Sbjct: 722 SSYYGRSR----SRSRSPRYPSGSRSRYRSRSYSPVPRRRGD-SISPSRRRRDNPRSPRD 781

Query: 781 APRERDGERSRQVYSPGYDNADDHDRNGNGNGYH------------------DKSAFEGE 788
            P  RDG+  R+ YSPGYDN      N NG+G H                   K   E +
Sbjct: 782 LPPVRDGD--RRPYSPGYDNV--AGPNDNGDGMHLNVMLIFYVGRVFLLCCCRKPMREEK 835

[Close]

BLAST of Lsi04G008760 vs. NCBI nr
Match: KAF9676832.1 (hypothetical protein SADUNF_Sadunf08G0044200 [Salix dunnii])

HSP 1 Score: 827.8 bits (2137), Expect = 8.0e-236
Identity = 489/834 (58.63%), Postives = 568/834 (68.11%), Query Frame = 0


Query: 1   MIAISMALIHQVCSPSVARAFRPRCVAAVPSRNLS---TSISPPARASPEAPKVLIGLSD 60
           MIA SM+L+  VCS  +ARA RPR V  + SR+LS   +S S P+RAS   P VL+G+S+
Sbjct: 1   MIATSMSLLQHVCSVPIARAMRPRSVTVISSRSLSATTSSSSTPSRASQVDPHVLLGMSE 60

Query: 61  QELQQLAVDFGQEKYRGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSPVYQ 120
            ELQQ+A+D GQ+ YRGKQLH LIY+RKVKEI++F+ L   FRNDLQEAGW+VGRSP++Q
Sbjct: 61  PELQQVAIDLGQQSYRGKQLHHLIYQRKVKEIQDFSQL---FRNDLQEAGWKVGRSPIFQ 120

Query: 121 SVTASDGTVKLLLKLDDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCATGK 180
           +VTA+DGTVKLL++L+DNRLIETVGIPVED+  KGS+RLTAC+SSQVGCPLRCSFCATGK
Sbjct: 121 TVTAADGTVKLLIRLEDNRLIETVGIPVEDE--KGSMRLTACVSSQVGCPLRCSFCATGK 180

Query: 181 GGFSRNLQRHEIVEQVFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNK------ 240
           GGFSRNL RHEIVEQV AIE+IF  RVTNVVFMGMGEPMLN+K +LEAHRCLNK      
Sbjct: 181 GGFSRNLHRHEIVEQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKNIFFSI 240

Query: 241 ----------------------------------------DVQIGQRMITISTVGVPNTI 300
                                                   DVQIGQRMITISTVGVPNTI
Sbjct: 241 CIVGNGNSGLKELGSDLPGISLLKLILLVKGLVEKRAAWMDVQIGQRMITISTVGVPNTI 300

Query: 301 KRLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDCRDYFLQTNRRVSFEYAL 360
           K+LASHKLQSTLA+SLHAPNQKLRETIVPSAK+YPLEAIMKDC++YFL+T+RRVSFEY L
Sbjct: 301 KKLASHKLQSTLALSLHAPNQKLRETIVPSAKSYPLEAIMKDCKEYFLETSRRVSFEYTL 360

Query: 361 LAGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRPYKKAVMAFVAALESHKI 420
           LA VND VEHA ELA+LLH+WG G+HVNLIPFNP++GSEY+RPYKKAV AF A LES KI
Sbjct: 361 LAEVNDRVEHAKELAELLHQWGRGHHVNLIPFNPIQGSEYKRPYKKAVQAFAAVLESRKI 420

Query: 421 TVSVRQTRGLDANAACEVPYYFLFYQLHYVASTWRLEEPIFCGGKGTSRKLDSDGYEEWR 480
           TVSVRQTRGLDA+AAC                             G  R           
Sbjct: 421 TVSVRQTRGLDASAAC-----------------------------GQLR----------- 480

Query: 481 GSHHIQVCLFYTLNSQVDVHCCEAKFEIQWSIEGGSDRAFIESSCFESSQKSDRGKILSS 540
                                                            QKS    +++S
Sbjct: 481 ----------------------------------------------NEFQKSP--LVINS 540

Query: 541 HSLFFLLFSSGQNMRRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPH 600
            S    L S  +N+  YSPP++S PRRGYGGRGR PP RGY     GGGG YGR +EQ  
Sbjct: 541 DS----LESQPENVAGYSPPHYSSPRRGYGGRGRIPPRRGY-----GGGGVYGRSKEQNS 600

Query: 601 GSLLVRNIPMDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQY 660
           GSLLVRNIP+DCRPEELR  FERFG VRDVYIPKDY TG+PRGF FV+FVDPY+A EAQ+
Sbjct: 601 GSLLVRNIPLDCRPEELRGLFERFGAVRDVYIPKDYRTGEPRGFGFVQFVDPYDAMEAQH 660

Query: 661 HMNGKKFAGREITVVLAAESRKRPEQMRQRSR-RGPSGYGGRRSHYGRSRSRSVSRSRSP 720
           HMNG+ F  R++ VV+A E+RKRPE+MR R+R  GPS YGGR S+   SRSRS+SRS  P
Sbjct: 661 HMNGQVFGKRQMFVVVATETRKRPEEMRHRARVSGPSDYGGRTSYSRCSRSRSLSRSPRP 720

Query: 721 RHPSGSRSRYRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGY 780
            H   SRSRYRSRSYSPAP+ + +YS SP RR+AD+   PRG P ER+G    + YSP Y
Sbjct: 721 YH--ASRSRYRSRSYSPAPK-QQNYSPSPERRYADHLRFPRGPPPEREGGHGCRSYSPCY 726

Query: 781 DNADDHDRNGNGNGYHDKSAFEGEDARANWRSSPGRTSRSPSGSRSRSADASPR 785
              D  D N N +G+  K A++  +ARA WRSS GR S SP G RSRSAD SPR
Sbjct: 781 GRGD--DLNINNSGFGKKLAYDFVEARA-WRSSHGRPSGSPYGRRSRSADLSPR 726

[Close]

BLAST of Lsi04G008760 vs. TAIR 10
Match: AT2G39670.1 (Radical SAM superfamily protein )

HSP 1 Score: 567.4 bits (1461), Expect = 1.8e-161
Identity = 283/372 (76.08%), Postives = 320/372 (86.02%), Query Frame = 0


Query: 16  SVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVDFGQEKYRGK 75
           S+A  F       VPS    +  + PAR       VLIG+S+ ELQ+LA++ GQE YRGK
Sbjct: 30  SLATTFSAAATTVVPSPKPVS--AKPARTPHVDSHVLIGMSEPELQELAINLGQEGYRGK 89

Query: 76  QLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSPVYQSVTASDGTVKLLLKLDDN 135
           QLH LIYKRKV ++E+F+NLPL FR  L + G++VGRSP+YQ+VTA+DGT+KLLLKL+DN
Sbjct: 90  QLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGGFKVGRSPIYQTVTATDGTIKLLLKLEDN 149

Query: 136 RLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQVFA 195
            LIETVGIPV+D + KG  RLTAC+SSQVGCPLRCSFCATGKGGFSRNLQRHEI+EQV A
Sbjct: 150 LLIETVGIPVQD-DEKGITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLA 209

Query: 196 IEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKDVQIGQRMITISTVGVPNTIKRLA 255
           IED+F  RVTNVVFMGMGEPMLN+K +L+AHRCLNKD++IGQRMITISTVGVPNTIK+LA
Sbjct: 210 IEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDIEIGQRMITISTVGVPNTIKKLA 269

Query: 256 SHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDCRDYFLQTNRRVSFEYALLAGV 315
           SHKLQSTLAVSLHAPNQ LRE IVPSAKAYPLEAIMKDCRDYF +TNRRVSFEYALLAGV
Sbjct: 270 SHKLQSTLAVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNRRVSFEYALLAGV 329

Query: 316 NDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRPYKKAVMAFVAALESHKITVSV 375
           ND VEHAVELA+LL EWG  YHVNLIP+NP+EGSEYQRPYKKAV+AF AALES KIT SV
Sbjct: 330 NDQVEHAVELAELLREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASV 389

Query: 376 RQTRGLDANAAC 388
           RQTRGLDA+AAC
Sbjct: 390 RQTRGLDASAAC 398

[Close]

BLAST of Lsi04G008760 vs. TAIR 10
Match: AT2G39670.2 (Radical SAM superfamily protein )

HSP 1 Score: 558.5 bits (1438), Expect = 8.4e-159
Identity = 282/375 (75.20%), Postives = 319/375 (85.07%), Query Frame = 0


Query: 16  SVARAFRPRCVAAVPSRNLSTSISPPARASPEAPKVLIGLSDQELQQLAVD---FGQEKY 75
           S+A  F       VPS    +  + PAR       VLIG+S+ ELQ+LA++     QE Y
Sbjct: 30  SLATTFSAAATTVVPSPKPVS--AKPARTPHVDSHVLIGMSEPELQELAINLVLIFQEGY 89

Query: 76  RGKQLHQLIYKRKVKEIEEFTNLPLAFRNDLQEAGWRVGRSPVYQSVTASDGTVKLLLKL 135
           RGKQLH LIYKRKV ++E+F+NLPL FR  L + G++VGRSP+YQ+VTA+DGT+KLLLKL
Sbjct: 90  RGKQLHHLIYKRKVNKVEDFSNLPLTFRKGLVDGGFKVGRSPIYQTVTATDGTIKLLLKL 149

Query: 136 DDNRLIETVGIPVEDKNNKGSVRLTACISSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQ 195
           +DN LIETVGIPV+D + KG  RLTAC+SSQVGCPLRCSFCATGKGGFSRNLQRHEI+EQ
Sbjct: 150 EDNLLIETVGIPVQD-DEKGITRLTACVSSQVGCPLRCSFCATGKGGFSRNLQRHEIIEQ 209

Query: 196 VFAIEDIFNRRVTNVVFMGMGEPMLNMKPMLEAHRCLNKDVQIGQRMITISTVGVPNTIK 255
           V AIED+F  RVTNVVFMGMGEPMLN+K +L+AHRCLNKD++IGQRMITISTVGVPNTIK
Sbjct: 210 VLAIEDVFKHRVTNVVFMGMGEPMLNLKSVLDAHRCLNKDIEIGQRMITISTVGVPNTIK 269

Query: 256 RLASHKLQSTLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDCRDYFLQTNRRVSFEYALL 315
           +LASHKLQSTLAVSLHAPNQ LRE IVPSAKAYPLEAIMKDCRDYF +TNRRVSFEYALL
Sbjct: 270 KLASHKLQSTLAVSLHAPNQSLREKIVPSAKAYPLEAIMKDCRDYFQETNRRVSFEYALL 329

Query: 316 AGVNDAVEHAVELAKLLHEWGGGYHVNLIPFNPVEGSEYQRPYKKAVMAFVAALESHKIT 375
           AGVND VEHAVELA+LL EWG  YHVNLIP+NP+EGSEYQRPYKKAV+AF AALES KIT
Sbjct: 330 AGVNDQVEHAVELAELLREWGKTYHVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKIT 389

Query: 376 VSVRQTRGLDANAAC 388
            SVRQTRGLDA+AAC
Sbjct: 390 ASVRQTRGLDASAAC 401

[Close]

BLAST of Lsi04G008760 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 289.3 bits (739), Expect = 9.5e-78
Identity = 184/289 (63.67%), Postives = 204/289 (70.59%), Query Frame = 0


Query: 505 MRRYSPPYHSPPRRGYGGRGRS----PPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIP 564
           MRRYSPPY+SPPRRGYGGRGRS    PP RGYGGGGGGGG     RR   HGSLLVRNIP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGG-----RRGSSHGSLLVRNIP 60

Query: 565 MDCRPEELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAG 624
           +DCRPEELR PFERFG VRDVYIP+DYY+G PRGFAFVEFVD Y+A EAQ  MN + FAG
Sbjct: 61  LDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAG 120

Query: 625 REITVVLAAESRKRPEQMRQRSR-RGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSR 684
           REITVV+A+ESRKRPE+MR ++R R     G R   +GRSRSRS+SRSRSPR PS SRSR
Sbjct: 121 REITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSR 180

Query: 685 YRSRSYSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQVYSPGYDN----ADD 744
           YRSRSYSPAPR RG                PRG   E D   SR+ YSPGY+     A D
Sbjct: 181 YRSRSYSPAPRRRGG--------------PPRG---EEDENYSRRSYSPGYEGAAAAAPD 240

Query: 745 HDRNGNGNGYHDKSAFEGEDARANWRSSPGRTSRSPSGSRSRSADASPR 785
            DRNG+ N   +K  +E ED R   R+     SRSPSGSRSRS + SPR
Sbjct: 241 RDRNGD-NEIREKPGYEAEDRRRGGRA----VSRSPSGSRSRSVEVSPR 262

[Close]

BLAST of Lsi04G008760 vs. TAIR 10
Match: AT3G19630.1 (Radical SAM superfamily protein )

HSP 1 Score: 187.2 bits (474), Expect = 5.1e-47
Identity = 118/309 (38.19%), Postives = 179/309 (57.93%), Query Frame = 0


Query: 90  EEFTNLPLAFRNDLQEAGWRVGRSPVYQSVTASDGTV-KLLLKLDDNRLIETVGIPVE-- 149
           +E  +LP A    L  + ++   S ++    +SDGT  KLL+KL +   +E V +  +  
Sbjct: 42  DEIPSLPSA-AYSLLHSKFKTLTSSLHSLFHSSDGTTSKLLIKLQNGAFVEAVVMRYDTR 101

Query: 150 -----DKNNKGSVRLTACISSQVGCPLRCSFCATGKGGFSRNLQRHEIVEQVFAIEDIFN 209
                 K   G +R T CISSQVGC + C+FCATG  GF  NL   EIVEQ+     I +
Sbjct: 102 LGMLGGKPRPGGIRSTLCISSQVGCKMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIAD 161

Query: 210 RRVTNVVFMGMGEPMLNMKPMLEAHR-CLNKDVQIGQRMITISTVGVPNTIKRLASHKLQ 269
             + N+VFMGMGEP+ N   ++EA R  LN+  Q+  + ITISTVG+ + I +L +    
Sbjct: 162 --IRNIVFMGMGEPLNNYNAVVEAVRVMLNQPFQLSPKRITISTVGIVHAINKLHNDLPG 221

Query: 270 STLAVSLHAPNQKLRETIVPSAKAYPLEAIMKDCRDYFLQTNRRVSFEYALLAGVNDAVE 329
            +LAVSLHAP Q++R  I+P+A+A+PL+ +M   + +   + +++  EY +L GVND  +
Sbjct: 222 VSLAVSLHAPVQEIRCQIMPAARAFPLQKLMDALQTFQKNSQQKIFIEYIMLDGVNDQEQ 281

Query: 330 HAVELAKLLHEWGGGYHVNLIPFNPV-EGSEYQRPYKKAVMAFVAAL-ESHKITVSVRQT 388
           HA  L +LL  +     +NLIPFNP+   S+++    + V  F   L E++KI  ++R+ 
Sbjct: 282 HAHLLGELLKTF--QVVINLIPFNPIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKE 341

[Close]

BLAST of Lsi04G008760 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 150.2 bits (378), Expect = 6.9e-36
Identity = 109/221 (49.32%), Postives = 134/221 (60.63%), Query Frame = 0


Query: 506 RRYSPPYHSPPRRGYGGRGRSPPGRGYGGGGGGGGGGYGRRREQPHGSLLVRNIPMDCRP 565
           R Y+P   SPP RGYG RGRSP  RG  G         GR R+ P  SLLVRN+  DCR 
Sbjct: 4   RSYTP---SPP-RGYGRRGRSPSPRGRYG---------GRSRDLP-TSLLVRNLRHDCRQ 63

Query: 566 EELRAPFERFGLVRDVYIPKDYYTGDPRGFAFVEFVDPYEASEAQYHMNGKKFAGREITV 625
           E+LR  FE+FG V+D+Y+P+DYYTGDPRGF FV+F+DP +A++A++HM+G    GRE+TV
Sbjct: 64  EDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTV 123

Query: 626 VLAAESRKRPEQMRQRSRRGPSGYGGRRSHYGRSRSRSVSRSRSPRHPSGSRSRYRSRS- 685
           V A E+RK+P +MR R R      GGR     R+  R  SRSRSP  P   RSR RS   
Sbjct: 124 VFAEENRKKPTEMRARERG-----GGRFRDRRRTPPRYYSRSRSP-PPRRGRSRSRSGDY 183

Query: 686 YSPAPRWRGDYSVSPGRRHADYPESPRGAPRERDGERSRQV 726
           YSP PR     S+SP     D   S   +P   DG R R +
Sbjct: 184 YSPPPRRHHPRSISPREERYDGRRSYSRSPAS-DGSRGRSL 203

The following BLAST results are available for this feature:

BLAST of Lsi04G008760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2JRQ8	3.3e-99	55.26	Probable dual-specificity RNA methyltransferase RlmN OS=Synechococcus sp. (strai...	[more]
Q2JMN2	2.3e-97	54.39	Probable dual-specificity RNA methyltransferase RlmN OS=Synechococcus sp. (strai...	[more]
B0C9F4	2.6e-96	53.35	Probable dual-specificity RNA methyltransferase RlmN OS=Acaryochloris marina (st...	[more]
Q8DG98	1.7e-95	53.71	Probable dual-specificity RNA methyltransferase RlmN OS=Thermosynechococcus elon...	[more]
Q7NIV3	1.1e-94	53.87	Probable dual-specificity RNA methyltransferase RlmN OS=Gloeobacter violaceus (s...	[more]

BLAST of Lsi04G008760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1Q3DDN4	1.6e-269	66.41	RRM_1 domain-containing protein/Radical_SAM domain-containing protein OS=Cephalo...	[more]
A0A6J5U5C4	3.4e-256	64.73	RRM domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS17090 ...	[more]
A0A498JI25	2.4e-246	59.79	RRM domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024151 PE=3 SV...	[more]
A0A5N5LNU0	1.3e-223	58.99	RRM domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_012390 PE=4...	[more]
A0A1R3JQ54	4.7e-218	61.66	RRM domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_15056 PE=...	[more]

BLAST of Lsi04G008760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3952096.1	1.1e-277	68.13	hypothetical protein CMV_022321 [Castanea mollissima]	[more]
GAV90368.1	3.2e-269	66.41	RRM_1 domain-containing protein/Radical_SAM domain-containing protein [Cephalotu...	[more]
CAB4270797.1	6.9e-256	64.73	unnamed protein product [Prunus armeniaca] >CAB4301179.1 unnamed protein product...	[more]
RXH94467.1	5.0e-246	59.79	hypothetical protein DVH24_024151 [Malus domestica]	[more]
KAF9676832.1	8.0e-236	58.63	hypothetical protein SADUNF_Sadunf08G0044200 [Salix dunnii]	[more]

BLAST of Lsi04G008760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39670.1	1.8e-161	76.08	Radical SAM superfamily protein	[more]
AT2G39670.2	8.4e-159	75.20	Radical SAM superfamily protein	[more]
AT3G55460.1	9.5e-78	63.67	SC35-like splicing factor 30	[more]
AT3G19630.1	5.1e-47	38.19	Radical SAM superfamily protein	[more]
AT1G55310.2	6.9e-36	49.32	SC35-like splicing factor 33	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 553..626 e-value: 4.7E-21 score: 85.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 554..624 e-value: 1.1E-18 score: 66.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 552..630 score: 17.830454
IPR006638	Elp3/MiaB/NifB	SMART	SM00729	MiaB	coord: 156..374 e-value: 0.0094 score: 5.0
IPR007197	Radical SAM	PFAM	PF04055	Radical_SAM	coord: 161..325 e-value: 1.0E-13 score: 52.0
IPR007197	Radical SAM	PROSITE	PS51918	RADICAL_SAM	coord: 152..382 score: 36.049648
IPR027492	Dual-specificity RNA methyltransferase RlmN	TIGRFAM	TIGR00048	TIGR00048	coord: 52..387 e-value: 1.2E-114 score: 380.9
IPR027492	Dual-specificity RNA methyltransferase RlmN	HAMAP	MF_01849	RNA_methyltr_RlmN	coord: 49..389 score: 62.049351
None	No IPR available	GENE3D	1.10.150.530		coord: 50..106 e-value: 8.8E-15 score: 56.1
None	No IPR available	SFLD	SFLDG01062	methyltransferase_(Class_A)	coord: 47..387 e-value: 0.0 score: 396.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 761..779
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 507..549
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 696..755
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 655..678
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 629..787
None	No IPR available	PANTHER	PTHR30544:SF5	RADICAL SAM SUPERFAMILY PROTEIN	coord: 42..387
None	No IPR available	CDD	cd01335	Radical_SAM	coord: 165..358 e-value: 3.11304E-12 score: 64.2769
None	No IPR available	SUPERFAMILY	102114	Radical SAM enzymes	coord: 156..399
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 544..668 e-value: 2.9E-26 score: 94.0
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 113..388 e-value: 1.7E-103 score: 347.7
IPR004383	Ribosomal RNA large subunit methyltransferase RlmN/Cfr	SFLD	SFLDF00275	adenosine_C2_methyltransferas	coord: 47..387 e-value: 0.0 score: 396.3
IPR040072	Methyltransferase (Class A)	PANTHER	PTHR30544	23S RRNA METHYLTRANSFERASE	coord: 42..387
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 548..659

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G008760.1	Lsi04G008760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070475	rRNA base methylation
biological_process	GO:0030488	tRNA methylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0051536	iron-sulfur cluster binding