Lsi04G008710 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G008710
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	zinc finger protein ZAT12-like
Location	chr04: 8509861 .. 8510379 (-)
RNA-Seq Expression	Lsi04G008710
Synteny	Lsi04G008710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAACTGCTTGATGTTACTTTCTCGTAACACCGCTTCCACTACTTCAGATTTCGAATCGTCGTCGTTGTCTTCTCCGAATCGTGTTTTCGAGTGCAAGACTTGCAATCGGCAGTTTTCGTCGTTTCAGGCGCTCGGTGGCCATCGCGCTAGTCACAAGAAGCCGCGGATTGTTGGAGGCGACAGCGGAAACTCCGATGGATCTTCATCGCAAGGATCTCCGACTAAGCCGAAGACGCATGAGTGTAGTATCTGTGGATTGGAGTTCGCGATTGGCCAAGCGCTTGGAGGACATATGAGGAGACATAGAGCCACGACGCTGTTGACCGATCACGCACGACTTACTAATCATCCGAGTAGTTTATCTCCTCCGCCGCGTTCTCAACCGCCTGTGGTGAAGAAGACGAACGGCGGTGGGAGGATTCTGTGTTTGGATCTGAATTTGACTCCGTCTGAGAACGATAGTAAGTTTCTGCAGCTTGGAAAGAGTATTTCCATGGTTGATTGTTTATTCTGA

mRNA sequence

ATGGCGAACTGCTTGATGTTACTTTCTCGTAACACCGCTTCCACTACTTCAGATTTCGAATCGTCGTCGTTGTCTTCTCCGAATCGTGTTTTCGAGTGCAAGACTTGCAATCGGCAGTTTTCGTCGTTTCAGGCGCTCGGTGGCCATCGCGCTAGTCACAAGAAGCCGCGGATTGTTGGAGGCGACAGCGGAAACTCCGATGGATCTTCATCGCAAGGATCTCCGACTAAGCCGAAGACGCATGAGTGTAGTATCTGTGGATTGGAGTTCGCGATTGGCCAAGCGCTTGGAGGACATATGAGGAGACATAGAGCCACGACGCTGTTGACCGATCACGCACGACTTACTAATCATCCGAGTAGTTTATCTCCTCCGCCGCGTTCTCAACCGCCTGTGGTGAAGAAGACGAACGGCGGTGGGAGGATTCTGTGTTTGGATCTGAATTTGACTCCGTCTGAGAACGATAGTAAGTTTCTGCAGCTTGGAAAGAGTATTTCCATGGTTGATTGTTTATTCTGA

Coding sequence (CDS)

ATGGCGAACTGCTTGATGTTACTTTCTCGTAACACCGCTTCCACTACTTCAGATTTCGAATCGTCGTCGTTGTCTTCTCCGAATCGTGTTTTCGAGTGCAAGACTTGCAATCGGCAGTTTTCGTCGTTTCAGGCGCTCGGTGGCCATCGCGCTAGTCACAAGAAGCCGCGGATTGTTGGAGGCGACAGCGGAAACTCCGATGGATCTTCATCGCAAGGATCTCCGACTAAGCCGAAGACGCATGAGTGTAGTATCTGTGGATTGGAGTTCGCGATTGGCCAAGCGCTTGGAGGACATATGAGGAGACATAGAGCCACGACGCTGTTGACCGATCACGCACGACTTACTAATCATCCGAGTAGTTTATCTCCTCCGCCGCGTTCTCAACCGCCTGTGGTGAAGAAGACGAACGGCGGTGGGAGGATTCTGTGTTTGGATCTGAATTTGACTCCGTCTGAGAACGATAGTAAGTTTCTGCAGCTTGGAAAGAGTATTTCCATGGTTGATTGTTTATTCTGA

Protein sequence

MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVGGDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPSSLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF

Homology

[Close]

BLAST of Lsi04G008710 vs. ExPASy Swiss-Prot
Match: Q9SLD4 (Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.7e-27
Identity = 73/172 (42.44%), Postives = 96/172 (55.81%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60
           +A CLM+L++ +          + S  +  FECKTCN++FSSFQALGGHRASHKKP++  
Sbjct: 17  IAKCLMILAQTSMVKQIGLNQHTESHTSNQFECKTCNKRFSSFQALGGHRASHKKPKLT- 76

Query: 61  GDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 120
                 D             H+CSIC   F  GQALGGHMRRHR++        +T  PS
Sbjct: 77  --VEQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHRSS--------MTVEPS 136

Query: 121 SLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF 173
            +SP   S  PV+K+     RIL LDLNLTP END +++     +  +D  F
Sbjct: 137 FISPMIPSM-PVLKRCGSSKRILSLDLNLTPLENDLEYIFGKTFVPKIDMKF 176

[Close]

BLAST of Lsi04G008710 vs. ExPASy Swiss-Prot
Match: Q42410 (Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 8.9e-26
Identity = 75/164 (45.73%), Postives = 94/164 (57.32%), Query Frame = 0


Query: 2   ANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVGG 61
           ANCLMLLSR         E+       RVF CKTC +QF SFQALGGHRASHKKP     
Sbjct: 16  ANCLMLLSR------VGQENVDGGDQKRVFTCKTCLKQFHSFQALGGHRASHKKP----- 75

Query: 62  DSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPSS 121
              N   SS      K  +H C ICG+EF +GQALGGHMRRHR  +     A +T    +
Sbjct: 76  --NNDALSSGLMKKVKTSSHPCPICGVEFPMGQALGGHMRRHRNESGAAGGALVTR---A 135

Query: 122 LSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSI 166
           L P P      +KK++ G R+ CLDL+L   +N +  L+LG+++
Sbjct: 136 LLPEP--TVTTLKKSSSGKRVACLDLSLGMVDNLNLKLELGRTV 161

[Close]

BLAST of Lsi04G008710 vs. ExPASy Swiss-Prot
Match: Q681X4 (Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 7.1e-23
Identity = 81/208 (38.94%), Postives = 103/208 (49.52%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESS-----SLSSPNR---VFECKTCNRQFSSFQALGGHRAS 60
           MA CL++L+R T   + D ++S      +SS N    V+ECKTCNR FSSFQALGGHRAS
Sbjct: 77  MAICLIMLARGTVLPSPDLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGGHRAS 136

Query: 61  HKKPRIVGGD-----------SGNSDGSSS----QGSPTKP----------KTHECSICG 120
           HKKPR    +           S + +G +S     GS              K HECSICG
Sbjct: 137 HKKPRTSTEEKTRLPLTQPKSSASEEGQNSHFKVSGSALASQASNIINKANKVHECSICG 196

Query: 121 LEFAIGQALGGHMRRHRATTLLTDHARLTNHPSSLSPPPRSQPPVVKKTNGGGRILCLDL 171
            EF  GQALGGHMRRHR           T   S  S     +  + +      + L LDL
Sbjct: 197 SEFTSGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGRSMEQQRKYLPLDL 256

[Close]

BLAST of Lsi04G008710 vs. ExPASy Swiss-Prot
Match: Q9LFG0 (Zinc finger protein ZAT18 OS=Arabidopsis thaliana OX=3702 GN=ZAT18 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-22
Identity = 69/170 (40.59%), Postives = 93/170 (54.71%), Query Frame = 0


Query: 5   LMLLSRNTASTTSDFESS--SLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVGGD 64
           LM+LSR+      D + S  S ++ N  FECKTCNR+F SFQALGGHRASHKKP+++   
Sbjct: 21  LMMLSRSFVVKQIDVKQSTGSKTNHNNHFECKTCNRKFDSFQALGGHRASHKKPKLI--- 80

Query: 65  SGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPSSL 124
               D    +    +   H+C+IC   F  GQALGGHMR+HR T+++T+         S+
Sbjct: 81  ---VDQEQVKHRNKENDMHKCTICDQMFGTGQALGGHMRKHR-TSMITE--------QSI 140

Query: 125 SPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF 173
            P      PV  + +    I  LDLNLTP END   +     +  +D  F
Sbjct: 141 VPSVVYSRPVFNRCSSSKEI--LDLNLTPLENDLVLIFGKNLVPQIDLKF 173

[Close]

BLAST of Lsi04G008710 vs. ExPASy Swiss-Prot
Match: Q9LX85 (Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.6e-22
Identity = 70/165 (42.42%), Postives = 91/165 (55.15%), Query Frame = 0


Query: 2   ANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVGG 61
           A CLMLLSR                  RVF CKTC ++FSSFQALGGHRASHKK  ++  
Sbjct: 16  AKCLMLLSR--------VGECGGGGEKRVFRCKTCLKEFSSFQALGGHRASHKK--LINS 75

Query: 62  DSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPSS 121
              +  GS S        +H C ICG+EF +GQALGGHMRRHR     ++ A      + 
Sbjct: 76  SDPSLLGSLSNKKTKTATSHPCPICGVEFPMGQALGGHMRRHR-----SEKASPGTLVTR 135

Query: 122 LSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSIS 167
              P  +    +KK++ G R+ CLDL+   S  + K L+LG++IS
Sbjct: 136 SFLPETTTVTTLKKSSSGKRVACLDLDSMESLVNWK-LELGRTIS 164

[Close]

BLAST of Lsi04G008710 vs. ExPASy TrEMBL
Match: A0A6J1JZD8 (zinc finger protein ZAT12-like OS=Cucurbita maxima OX=3661 GN=LOC111491061 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.5e-84
Identity = 159/172 (92.44%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60
           MANCLMLLSR++ASTT+DFESS  SSPNRVFECKTCNRQF SFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 72

Query: 61  GDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 120
            D GNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS
Sbjct: 73  PDGGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 132

Query: 121 SLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF 173
           SLS PPRSQPPVVKKTNGGGRILCLDLNLTPSEND +FLQLGK ISMVDC F
Sbjct: 133 SLSHPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKGISMVDCFF 184

[Close]

BLAST of Lsi04G008710 vs. ExPASy TrEMBL
Match: A0A6J1GYC8 (zinc finger protein ZAT12-like OS=Cucurbita moschata OX=3662 GN=LOC111458600 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.0e-84
Identity = 159/172 (92.44%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60
           MANCLMLLSR++AS T+DFESS  SSPNRVFECKTCNRQF SFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRSSASNTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 72

Query: 61  GDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 120
            D GNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS
Sbjct: 73  PDGGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 132

Query: 121 SLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF 173
           SLS PPRSQPPVVKKTNGGGRILCLDLNLTPSEND +FLQLGKSISMVDC F
Sbjct: 133 SLSHPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 184

[Close]

BLAST of Lsi04G008710 vs. ExPASy TrEMBL
Match: A0A6J1FVF5 (zinc finger protein ZAT12-like OS=Cucurbita moschata OX=3662 GN=LOC111447651 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.5e-80
Identity = 157/176 (89.20%), Postives = 163/176 (92.61%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLS----SPNRVFECKTCNRQFSSFQALGGHRASHKKP 60
           MANCLMLLSR++A+TT+DFESSS S    SPNRVFECKTCNRQF SFQALGGHRASHKKP
Sbjct: 14  MANCLMLLSRSSATTTADFESSSSSPPSLSPNRVFECKTCNRQFPSFQALGGHRASHKKP 73

Query: 61  RIVGGDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLT 120
           RI   D GNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDH RLT
Sbjct: 74  RI---DGGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHGRLT 133

Query: 121 N--HPSSLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDC 171
           N  HPSSLSPPPRSQPP+VKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISM+DC
Sbjct: 134 NNHHPSSLSPPPRSQPPLVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMLDC 186

[Close]

BLAST of Lsi04G008710 vs. ExPASy TrEMBL
Match: A0A6J1JDK2 (zinc finger protein ZAT12-like OS=Cucurbita maxima OX=3661 GN=LOC111483429 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.2e-79
Identity = 155/174 (89.08%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLS--SPNRVFECKTCNRQFSSFQALGGHRASHKKPRI 60
           MANCLMLLSR++A+TT+DFESSS    SPNRVFECKTCNRQF SFQALGGHRASHKKPRI
Sbjct: 14  MANCLMLLSRSSATTTADFESSSSPSLSPNRVFECKTCNRQFPSFQALGGHRASHKKPRI 73

Query: 61  VGGDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTN- 120
              D GNSDG+SSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDH RLTN 
Sbjct: 74  ---DGGNSDGTSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHGRLTNN 133

Query: 121 -HPSSLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDC 171
            HPSSLSPPPRSQPP+VKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISM+DC
Sbjct: 134 HHPSSLSPPPRSQPPLVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMLDC 184

[Close]

BLAST of Lsi04G008710 vs. ExPASy TrEMBL
Match: A0A5D3CS99 (Zinc finger protein ZAT12-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3369G00090 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 149/173 (86.13%), Postives = 157/173 (90.75%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60
           MANCLMLLSRNTA+   +  S++ SSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG
Sbjct: 1   MANCLMLLSRNTAADHFESSSTNSSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60

Query: 61  GDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHP- 120
           GD GNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLL D   LTNHP 
Sbjct: 61  GDGGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLNDARLLTNHPR 120

Query: 121 SSLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF 173
            SLSPPP  +PPVVKK+NGGGRILCLDLNLTPSENDS+FLQLGKS+SMVDC F
Sbjct: 121 RSLSPPP-PKPPVVKKSNGGGRILCLDLNLTPSENDSRFLQLGKSVSMVDCFF 172

[Close]

BLAST of Lsi04G008710 vs. NCBI nr
Match: XP_038892761.1 (zinc finger protein ZAT12-like [Benincasa hispida])

HSP 1 Score: 334.7 bits (857), Expect = 4.6e-88
Identity = 165/172 (95.93%), Postives = 166/172 (96.51%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60
           MANCLMLLSRN ASTT+DFESSS SSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRNNASTTADFESSSSSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 72

Query: 61  GDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 120
           GD GNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLL DHARLTNHPS
Sbjct: 73  GDGGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLNDHARLTNHPS 132

Query: 121 SLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF 173
           SLSPPPRSQPPVVKKTNG GRILCLDLNLTPSENDSKFLQLGKSISMVDC F
Sbjct: 133 SLSPPPRSQPPVVKKTNGSGRILCLDLNLTPSENDSKFLQLGKSISMVDCFF 184

[Close]

BLAST of Lsi04G008710 vs. NCBI nr
Match: KAG7031623.1 (Zinc finger protein ZAT11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.9 bits (829), Expect = 8.2e-85
Identity = 160/172 (93.02%), Postives = 164/172 (95.35%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60
           MANCLMLLSR++ASTT+DFESS  SSPNRVFECKTCNRQF SFQALGGHRASHKKPRIVG
Sbjct: 1   MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 60

Query: 61  GDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 120
            D GNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS
Sbjct: 61  PDGGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 120

Query: 121 SLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF 173
           SLS PPRSQPPVVKKTNGGGRILCLDLNLTPSEND +FLQLGKSISMVDC F
Sbjct: 121 SLSQPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 172

[Close]

BLAST of Lsi04G008710 vs. NCBI nr
Match: XP_023545353.1 (zinc finger protein ZAT12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 160/172 (93.02%), Postives = 164/172 (95.35%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60
           MANCLMLLSR++ASTT+DFESS  SSPNRVFECKTCNRQF SFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 72

Query: 61  GDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 120
            D GNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS
Sbjct: 73  PDGGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 132

Query: 121 SLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF 173
           SLS PPRSQPPVVKKTNGGGRILCLDLNLTPSEND +FLQLGKSISMVDC F
Sbjct: 133 SLSHPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 184

[Close]

BLAST of Lsi04G008710 vs. NCBI nr
Match: XP_022995602.1 (zinc finger protein ZAT12-like [Cucurbita maxima])

HSP 1 Score: 322.0 bits (824), Expect = 3.1e-84
Identity = 159/172 (92.44%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60
           MANCLMLLSR++ASTT+DFESS  SSPNRVFECKTCNRQF SFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRSSASTTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 72

Query: 61  GDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 120
            D GNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS
Sbjct: 73  PDGGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 132

Query: 121 SLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF 173
           SLS PPRSQPPVVKKTNGGGRILCLDLNLTPSEND +FLQLGK ISMVDC F
Sbjct: 133 SLSHPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKGISMVDCFF 184

[Close]

BLAST of Lsi04G008710 vs. NCBI nr
Match: XP_022957121.1 (zinc finger protein ZAT12-like [Cucurbita moschata])

HSP 1 Score: 321.6 bits (823), Expect = 4.1e-84
Identity = 159/172 (92.44%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60
           MANCLMLLSR++AS T+DFESS  SSPNRVFECKTCNRQF SFQALGGHRASHKKPRIVG
Sbjct: 13  MANCLMLLSRSSASNTTDFESSLSSSPNRVFECKTCNRQFPSFQALGGHRASHKKPRIVG 72

Query: 61  GDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 120
            D GNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS
Sbjct: 73  PDGGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 132

Query: 121 SLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF 173
           SLS PPRSQPPVVKKTNGGGRILCLDLNLTPSEND +FLQLGKSISMVDC F
Sbjct: 133 SLSHPPRSQPPVVKKTNGGGRILCLDLNLTPSENDKQFLQLGKSISMVDCFF 184

[Close]

BLAST of Lsi04G008710 vs. TAIR 10
Match: AT2G28710.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-30
Identity = 77/167 (46.11%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60
           MANCL+LLS+   + T           +RVF CKTCN++F SFQALGGHRASH++   + 
Sbjct: 14  MANCLILLSKAHQNDTK----------SRVFACKTCNKEFPSFQALGGHRASHRRSAALE 73

Query: 61  GDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 120
           G +  S          KP  HEC ICG EFA+GQALGGHMR+HR           +    
Sbjct: 74  GHAPPSP------KRVKPVKHECPICGAEFAVGQALGGHMRKHRGG---------SGGGG 133

Query: 121 SLSPPPRSQPPVVKKTNGGG--RILCLDLNLTPSENDSKFLQLGKSI 166
             S  P + P  +KK+ GG   R+LCLDLNLTP EN+   L+LG+ I
Sbjct: 134 GRSLAPATAPVTMKKSGGGNGKRVLCLDLNLTPLENEDLKLELGRFI 155

[Close]

BLAST of Lsi04G008710 vs. TAIR 10
Match: AT2G37430.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 3.4e-28
Identity = 73/172 (42.44%), Postives = 96/172 (55.81%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVG 60
           +A CLM+L++ +          + S  +  FECKTCN++FSSFQALGGHRASHKKP++  
Sbjct: 17  IAKCLMILAQTSMVKQIGLNQHTESHTSNQFECKTCNKRFSSFQALGGHRASHKKPKLT- 76

Query: 61  GDSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPS 120
                 D             H+CSIC   F  GQALGGHMRRHR++        +T  PS
Sbjct: 77  --VEQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHRSS--------MTVEPS 136

Query: 121 SLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSISMVDCLF 173
            +SP   S  PV+K+     RIL LDLNLTP END +++     +  +D  F
Sbjct: 137 FISPMIPSM-PVLKRCGSSKRILSLDLNLTPLENDLEYIFGKTFVPKIDMKF 176

[Close]

BLAST of Lsi04G008710 vs. TAIR 10
Match: AT5G59820.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 118.2 bits (295), Expect = 6.3e-27
Identity = 75/164 (45.73%), Postives = 94/164 (57.32%), Query Frame = 0


Query: 2   ANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVGG 61
           ANCLMLLSR         E+       RVF CKTC +QF SFQALGGHRASHKKP     
Sbjct: 16  ANCLMLLSR------VGQENVDGGDQKRVFTCKTCLKQFHSFQALGGHRASHKKP----- 75

Query: 62  DSGNSDGSSSQGSPTKPKTHECSICGLEFAIGQALGGHMRRHRATTLLTDHARLTNHPSS 121
              N   SS      K  +H C ICG+EF +GQALGGHMRRHR  +     A +T    +
Sbjct: 76  --NNDALSSGLMKKVKTSSHPCPICGVEFPMGQALGGHMRRHRNESGAAGGALVTR---A 135

Query: 122 LSPPPRSQPPVVKKTNGGGRILCLDLNLTPSENDSKFLQLGKSI 166
           L P P      +KK++ G R+ CLDL+L   +N +  L+LG+++
Sbjct: 136 LLPEP--TVTTLKKSSSGKRVACLDLSLGMVDNLNLKLELGRTV 161

[Close]

BLAST of Lsi04G008710 vs. TAIR 10
Match: AT3G46070.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-24
Identity = 76/179 (42.46%), Postives = 95/179 (53.07%), Query Frame = 0


Query: 2   ANCLMLLSRNTASTTSDFESSSLSSPNRVFECKTCNRQFSSFQALGGHRASHKKPRIVGG 61
           A+CLMLLS                   RVF CKTC R F SFQALGGHRASH K      
Sbjct: 16  ASCLMLLSG---------IGEHDGRKKRVFRCKTCERDFDSFQALGGHRASHSK------ 75

Query: 62  DSGNSDGSSSQGSP-TKPKT------HECSICGLEFAIGQALGGHMRRHR-------ATT 121
              NSD  S  GSP  KPKT      H C ICGLEF +GQALGGHMR+HR       A+ 
Sbjct: 76  -LTNSDDKSLPGSPKKKPKTTTTTTAHTCPICGLEFPMGQALGGHMRKHRNEKEREKASN 135

Query: 122 LLTDHARLTNHPSSLSPPPRSQPPVVKKTNGGGRILCLDLNLTPSEN-DSKFLQLGKSI 166
           +L  H+ +         P  +    +KK++ G R+ CLD +LT  E+  +  L+LG+++
Sbjct: 136 VLVTHSFM---------PETTTVTTLKKSSSGKRVACLDFDLTSVESFVNTELELGRTM 169

[Close]

BLAST of Lsi04G008710 vs. TAIR 10
Match: AT2G28200.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 108.6 bits (270), Expect = 5.0e-24
Identity = 81/208 (38.94%), Postives = 103/208 (49.52%), Query Frame = 0


Query: 1   MANCLMLLSRNTASTTSDFESS-----SLSSPNR---VFECKTCNRQFSSFQALGGHRAS 60
           MA CL++L+R T   + D ++S      +SS N    V+ECKTCNR FSSFQALGGHRAS
Sbjct: 77  MAICLIMLARGTVLPSPDLKNSRKIHQKISSENSSFYVYECKTCNRTFSSFQALGGHRAS 136

Query: 61  HKKPRIVGGD-----------SGNSDGSSS----QGSPTKP----------KTHECSICG 120
           HKKPR    +           S + +G +S     GS              K HECSICG
Sbjct: 137 HKKPRTSTEEKTRLPLTQPKSSASEEGQNSHFKVSGSALASQASNIINKANKVHECSICG 196

Query: 121 LEFAIGQALGGHMRRHRATTLLTDHARLTNHPSSLSPPPRSQPPVVKKTNGGGRILCLDL 171
            EF  GQALGGHMRRHR           T   S  S     +  + +      + L LDL
Sbjct: 197 SEFTSGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGRSMEQQRKYLPLDL 256

The following BLAST results are available for this feature:

BLAST of Lsi04G008710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SLD4	4.7e-27	42.44	Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1	[more]
Q42410	8.9e-26	45.73	Zinc finger protein ZAT12 OS=Arabidopsis thaliana OX=3702 GN=ZAT12 PE=2 SV=1	[more]
Q681X4	7.1e-23	38.94	Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1	[more]
Q9LFG0	2.1e-22	40.59	Zinc finger protein ZAT18 OS=Arabidopsis thaliana OX=3702 GN=ZAT18 PE=2 SV=1	[more]
Q9LX85	4.6e-22	42.42	Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1	[more]

BLAST of Lsi04G008710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZD8	1.5e-84	92.44	zinc finger protein ZAT12-like OS=Cucurbita maxima OX=3661 GN=LOC111491061 PE=4 ...	[more]
A0A6J1GYC8	2.0e-84	92.44	zinc finger protein ZAT12-like OS=Cucurbita moschata OX=3662 GN=LOC111458600 PE=...	[more]
A0A6J1FVF5	6.5e-80	89.20	zinc finger protein ZAT12-like OS=Cucurbita moschata OX=3662 GN=LOC111447651 PE=...	[more]
A0A6J1JDK2	3.2e-79	89.08	zinc finger protein ZAT12-like OS=Cucurbita maxima OX=3661 GN=LOC111483429 PE=4 ...	[more]
A0A5D3CS99	2.6e-76	86.13	Zinc finger protein ZAT12-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Lsi04G008710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892761.1	4.6e-88	95.93	zinc finger protein ZAT12-like [Benincasa hispida]	[more]
KAG7031623.1	8.2e-85	93.02	Zinc finger protein ZAT11, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023545353.1	1.1e-84	93.02	zinc finger protein ZAT12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022995602.1	3.1e-84	92.44	zinc finger protein ZAT12-like [Cucurbita maxima]	[more]
XP_022957121.1	4.1e-84	92.44	zinc finger protein ZAT12-like [Cucurbita moschata]	[more]

BLAST of Lsi04G008710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28710.1	1.2e-30	46.11	C2H2-type zinc finger family protein	[more]
AT2G37430.1	3.4e-28	42.44	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G59820.1	6.3e-27	45.73	C2H2-type zinc finger family protein	[more]
AT3G46070.1	3.8e-24	42.46	C2H2-type zinc finger family protein	[more]
AT2G28200.1	5.0e-24	38.94	C2H2-type zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 31..53 e-value: 0.2 score: 20.7 coord: 81..103 e-value: 0.5 score: 19.4
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 33..53
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 83..103
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 81..103 score: 8.912109
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 31..58 score: 10.346144
None	No IPR available	PFAM	PF13912	zf-C2H2_6	coord: 30..55 e-value: 1.3E-12 score: 47.3 coord: 81..105 e-value: 8.3E-10 score: 38.4
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 28..103 e-value: 4.2E-10 score: 41.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..135
None	No IPR available	PANTHER	PTHR26374:SF379	ZINC FINGER PROTEIN ZAT12	coord: 1..170
None	No IPR available	PANTHER	PTHR26374	ZINC FINGER PROTEIN ZAT5	coord: 1..170
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 29..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G008710.1	Lsi04G008710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010200	response to chitin