Lsi04G008650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G008650
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L23, chloroplastic
Locationchr04: 8445252 .. 8447025 (+)
RNA-Seq ExpressionLsi04G008650
SyntenyLsi04G008650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATACTTCCAAGAAAATAAAGGTCAGGCCCAATTCCCAAACTGACCACTGAAGGCCATATCTAATAGCTCCGTTTTAGAAACCCTAATTCGGCCGCAGCTTTTCATCTCGCCATCCCTCTCTTCGCAGGTATGAATCTGCCTCCTTCGTGCCATTGCTGTTAATTTTTGCCTATTTCTTCCTTCCTTGCTTTTGTTTTGTCTTCTCGCTTTGATTATTTCTTTCTGCTAGCAGGTAAGTTTTTCTGGTCCAGGATCTTCAGCAATGGCACCTAAAGGTATGCTTGCATTCTGATATTGTGTTTGTTTGAGCACTCTATGTTCGTTTATTTCAATTTCTGCCTCCATTTGTTTCAATCAAAGCTGGGTGCCGTAAATACGTTCCCAGTATTCAAAACCTGGTTTCTTAAATCTACTTCTGCTCTGAACTACAAGATCAAGTGATTGGTGGATGGGATTTTAGTATGGTATAGAAGGAGAAGAGTACTTAATTAAAGCGAATTCCATGTAGGTTTTGCGATTTATTTAGCGTTTTAGATGGAAGAACAACAATTTGAGAAGGTTTAGTGGACTTTTTATATGTGTGAATTGTATTGAATCCACTGGTGGAATCTGAGCTTTCTAAACTGCACTGGGTAGTTTTGAGCTTTTGATTCTGTGTCTGTCGTTAATCCAAGGGTTTTTGTTTCGTCTTTTGCAGCCGACAGTAGCAAAAAGGCTGATCCCAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGTCCAACTTTCAAGAAGAAGGCTAAGAAGATCAGAACATCGGTTACATTCCATAGGCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTAGGATCAGTGTAACTCCAAGGAACAAGTTGGACCAATATCAAATTCTGAAATATCCACTGACCACAGAGTCTGCAATGAAGAAGATTGAGGATAACAACACCCTTGTCTTTATTGTTGACATTCGTGCCAACAAGAAAAATATTAAAGATGCTGTCAAGAAGATGTATGATATTCAGACCAAGAAAGTGAACACTTTAATCAGGTATCCATGGTTCATATTCATAAGTTTTGGTGAACAGCAATTTAGAATCTACATTTGCTAATTCAAGTATTCATCATCTTTTAGAAAGAAACTTGGTATGATACAAAAGAAAGAATAGGTCCAACTTTTACAATTGTTTGAACCTGATCGTGCTTATTATTTTACTCAACACCTTTAATCTATGTACAAACTATCAATTGATTAATCCATTGTGATGATGAATGATTGATGTCCTAATGTACTTATCTACATTCCTGGTATGCAGGCCCGACGGAACGAAGAAGGCATACGTTAGGTTAACTCCAGATTATGATGCCCTAGATGTGGCAAACAAGATTGGTATCATCTAAACTGCAGATCTTGGAGCGAGTATTTTCGTTGCAATTTGTTACATGTTTAAATTTTGGAGAGCATTTTGTAGTAGGACCCTAGTTTTATTTTAGCTTTTTTTTTTTAATATGTACTGGTATTTGTTCGCTCAGATAGACTGGGTTCACAATACTTGGAATGATGGAATATGCATTCCAACCATTTTCATTATTGTTTGCTTCAGACTTCATTACATCATTACTGAATTTTGCTCTTTGCAACTTCTTTTTGGTTTTTTAATGTATGGTATCCAATTGCTTGGCCCCCAGCAGCTTATCCTAGTGTGTGGGGATTGTTTTGTGCTGAATGAGAATGTACTATAGTTGTATTAGCAACATTATCA

mRNA sequence

CATACTTCCAAGAAAATAAAGGTCAGGCCCAATTCCCAAACTGACCACTGAAGGCCATATCTAATAGCTCCGTTTTAGAAACCCTAATTCGGCCGCAGCTTTTCATCTCGCCATCCCTCTCTTCGCAGGTAAGTTTTTCTGGTCCAGGATCTTCAGCAATGGCACCTAAAGCCGACAGTAGCAAAAAGGCTGATCCCAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGTCCAACTTTCAAGAAGAAGGCTAAGAAGATCAGAACATCGGTTACATTCCATAGGCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTAGGATCAGTGTAACTCCAAGGAACAAGTTGGACCAATATCAAATTCTGAAATATCCACTGACCACAGAGTCTGCAATGAAGAAGATTGAGGATAACAACACCCTTGTCTTTATTGTTGACATTCGTGCCAACAAGAAAAATATTAAAGATGCTGTCAAGAAGATGTATGATATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCCGACGGAACGAAGAAGGCATACGTTAGGTTAACTCCAGATTATGATGCCCTAGATGTGGCAAACAAGATTGGTATCATCTAAACTGCAGATCTTGGAGCGAGTATTTTCGTTGCAATTTGTTACATGTTTAAATTTTGGAGAGCATTTTGTAGTAGGACCCTAGTTTTATTTTAGCTTTTTTTTTTTAATATGTACTGGTATTTGTTCGCTCAGATAGACTGGGTTCACAATACTTGGAATGATGGAATATGCATTCCAACCATTTTCATTATTGTTTGCTTCAGACTTCATTACATCATTACTGAATTTTGCTCTTTGCAACTTCTTTTTGGTTTTTTAATGTATGGTATCCAATTGCTTGGCCCCCAGCAGCTTATCCTAGTGTGTGGGGATTGTTTTGTGCTGAATGAGAATGTACTATAGTTGTATTAGCAACATTATCA

Coding sequence (CDS)

ATGGCACCTAAAGCCGACAGTAGCAAAAAGGCTGATCCCAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGTCCAACTTTCAAGAAGAAGGCTAAGAAGATCAGAACATCGGTTACATTCCATAGGCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTATCCTAGGATCAGTGTAACTCCAAGGAACAAGTTGGACCAATATCAAATTCTGAAATATCCACTGACCACAGAGTCTGCAATGAAGAAGATTGAGGATAACAACACCCTTGTCTTTATTGTTGACATTCGTGCCAACAAGAAAAATATTAAAGATGCTGTCAAGAAGATGTATGATATTCAGACCAAGAAAGTGAACACTTTAATCAGGCCCGACGGAACGAAGAAGGCATACGTTAGGTTAACTCCAGATTATGATGCCCTAGATGTGGCAAACAAGATTGGTATCATCTAA

Protein sequence

MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Homology
[Close]
BLAST of Lsi04G008650 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.2e-67
Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0 

Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           IS TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Lsi04G008650 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.7e-66
Identity = 137/154 (88.96%), Postives = 142/154 (92.21%), Query Frame = 0 

Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD SKK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           IS   RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+A+KK IKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Lsi04G008650 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-65
Identity = 136/154 (88.31%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAPKADSSKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A  +KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           IS  PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]
BLAST of Lsi04G008650 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 8.7e-65
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Lsi04G008650 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.6e-64
Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Lsi04G008650 vs. ExPASy TrEMBL
Match: A0A5A7U4W7 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3369G00030 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.6e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Lsi04G008650 vs. ExPASy TrEMBL
Match: A0A0A0KS61 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G180850 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.6e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 60  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 119

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK
Sbjct: 120 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 179

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 180 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212

[Close]
BLAST of Lsi04G008650 vs. ExPASy TrEMBL
Match: A0A1S3CFM9 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500191 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.6e-75
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Lsi04G008650 vs. ExPASy TrEMBL
Match: A0A6J1K8U2 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491145 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.3e-73
Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Lsi04G008650 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.2e-72
Identity = 149/153 (97.39%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADS+KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Lsi04G008650 vs. NCBI nr
Match: XP_004147702.1 (60S ribosomal protein L23a [Cucumis sativus] >XP_008461635.1 PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >KAA0050284.1 60S ribosomal protein L23a-like [Cucumis melo var. makuwa] >KAE8647979.1 hypothetical protein Csa_000656 [Cucumis sativus] >TYK14757.1 60S ribosomal protein L23a-like [Cucumis melo var. makuwa])

HSP 1 Score: 289.3 bits (739), Expect = 2.0e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Lsi04G008650 vs. NCBI nr
Match: XP_038891458.1 (60S ribosomal protein L23a [Benincasa hispida])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIK AVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKYAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Lsi04G008650 vs. NCBI nr
Match: XP_022995723.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Lsi04G008650 vs. NCBI nr
Match: XP_008463516.1 (PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal protein L23a [Cucumis melo var. makuwa])

HSP 1 Score: 282.3 bits (721), Expect = 2.4e-72
Identity = 149/153 (97.39%), Postives = 152/153 (99.35%), Query Frame = 0 

Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADS+KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Lsi04G008650 vs. NCBI nr
Match: XP_004149813.1 (60S ribosomal protein L23a [Cucumis sativus] >KGN51263.1 hypothetical protein Csa_007796 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 2.4e-72
Identity = 149/153 (97.39%), Postives = 151/153 (98.69%), Query Frame = 0 

Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADS+KK DPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSTKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]
BLAST of Lsi04G008650 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 247.7 bits (631), Expect = 6.2e-66
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Lsi04G008650 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 247.7 bits (631), Expect = 6.2e-66
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0 

Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Lsi04G008650 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 244.2 bits (622), Expect = 6.8e-65
Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Lsi04G008650 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 244.2 bits (622), Expect = 6.8e-65
Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 0 

Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]
BLAST of Lsi04G008650 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-61
Identity = 129/154 (83.77%), Postives = 134/154 (87.01%), Query Frame = 0 

Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:
BLAST of Lsi04G008650 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9AT353.2e-6790.2660S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1[more]
Q077612.7e-6688.9660S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1[more]
O226445.1e-6588.3160S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1[more]
Q8LD468.7e-6587.0160S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=... [more]
Q9M3C39.6e-6486.3660S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=... [more]
BLAST of Lsi04G008650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U4W79.6e-75100.0050S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A0A0KS619.6e-75100.0050S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G180... [more]
A0A1S3CFM99.6e-75100.0050S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500191... [more]
A0A6J1K8U25.3e-7398.0450S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
A0A5D3C5W31.2e-7297.3950S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Lsi04G008650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147702.12.0e-74100.0060S ribosomal protein L23a [Cucumis sativus] >XP_008461635.1 PREDICTED: 60S ribo... [more]
XP_038891458.12.2e-7399.3560S ribosomal protein L23a [Benincasa hispida][more]
XP_022995723.11.1e-7298.0460S ribosomal protein L23a [Cucurbita maxima][more]
XP_008463516.12.4e-7297.39PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal p... [more]
XP_004149813.12.4e-7297.3960S ribosomal protein L23a [Cucumis sativus] >KGN51263.1 hypothetical protein Cs... [more]
BLAST of Lsi04G008650 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39460.16.2e-6687.01ribosomal protein L23AA [more]
AT2G39460.26.2e-6687.01ribosomal protein L23AA [more]
AT3G55280.16.8e-6586.36ribosomal protein L23AB [more]
AT3G55280.26.8e-6586.36ribosomal protein L23AB [more]
AT3G55280.31.6e-6183.77ribosomal protein L23AB [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 34..153
e-value: 1.0E-53
score: 182.5
IPR019985Ribosomal protein L23TIGRFAMTIGR03636TIGR03636coord: 77..153
e-value: 2.0E-29
score: 99.7
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 14..62
e-value: 1.4E-18
score: 66.8
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 73..135
e-value: 2.4E-15
score: 56.6
IPR013025Ribosomal protein L25/L23PANTHERPTHR1162060S RIBOSOMAL PROTEIN L23Acoord: 1..153
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 73..153
score: 22.516167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availablePANTHERPTHR11620:SF81RIBOSOMAL PROTEIN L23A, PUTATIVE-RELATEDcoord: 1..153
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 131..146
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 71..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G008650.1Lsi04G008650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome