Lsi04G008640 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGTAGCTATTTAACAGGGGAATTCTCTTCATTTTGGATGACTGTGTGATCGTTTTCTAATTATGTTTAGGTTCAAGTTACACATTAGTTTTTAACTTTCAATCTTGTATTTAAAATGTCACTATTCTTTGCATCCTTTCAATTCAATGAATTCATTCTTTCGGGAATGAAAATGTCTTTTTTCTTTTATTATCCATCTTAGGAAAGAGACGTAACTCTTTGAATGATCACGAATTAATTTATAAATATGTTATATGTCTCTCCCAAAATCTCAAAATTTCTATAAAAACTTTTCTCACATCTAAAAGTTTGTTGAAGACTGATTTAATTTACAAAGTAGAGTTCATTGGATCTTGTAGACGAGGTGTGTAATCTATTTTATCCTTGTAAATTTGTTGTACTCCGATTTTTTCATGCATACAGGTTTTGAAAAAAAAAATACAGGTTTTATATTTTCTGATGTAATGTGATGATATTCATATAACGTTTAACAAGTTATTGAACTTGTTTTAGGTTCTAAACTTTCAATTTAGTATCCAATAGGTCGGTAAATAAATAAGACAACTAAGACACGTTTGATACATAATTGAATGTTTAAAGATCTATTAAATACTTTGTAAAATTGAGAGACCATATAAATACAAATTTCAAAGTTTAGAGACTTAGTATACATTTTGTAAGGTTAACAAATCAAATAGACACAAATCCAATACTTCAAGACCTAAGCTTGTAATTTAACATTTTATCTTGCTTACGAATTCGAGCTAGTTAGAGATGTATTGCATTGCATGTTAGTATGTTTACTGCCATGGTTGATGTTCATTAAAGAAAATTAAAATTTGGGTTGCCTCATTTTGAAGGTTGACAACAATGGAACAAACCGATGTGAGATTGAAGCTTCTGATAGACACAAAAACAGAACGAGTTCTTTACGGTGAAGCAAACAAGAAGTTCATAGACTTTCTTTTCAATCTACTTTCCCTCCCAGTTGGGGCTGTAATTAGGCTGTTGAAAAAGGATGGCATGGTGGGGTGTTTGGGAAATCTGTACGAGAGTGTAGAAACCTTGAACGAGTCCTATTTGCAGCCAAATCAAAGCAAAGATATAGTCCTAAAACCCAAAGTCTTATTCAATTCTTTCACCAAACTTTTGGCTAATATTGTTGTCCCTGCTGCAGCTAAACCACCTGCTACATTTTATTGCCATAATGGATCATATAGCAGCTGCCGTGGTTACGTTTCTAATAGTTCTGATGCAATTTGTCCGAATTGTAACGGTCGCTTGAGTCAAAGTTGTAGATATGGACGCCTCCAAATGCAGGAATTCAACCATCTCCTGGTAGGGGATTTGTGAAGGATTTGGCCACTTACATAGTGATGGATGACCTTACTGTCAAGCACATTTCTGACTTCTCCATTACAACTCTTTTGAAAAAGTTCAATATCAAGGATGTGGATTCTTTGGAGGAGAAAGTCATCACTTTGGATGTCGATGAGGTAATTTATATATATCCACACGTTTTCATCTGTGTTCGAGGTGTAAATTATTTTAGTTTTAGTATGAAATAGTAAACACTATAACAAAAAAGGGAAAAGAGAGCATGAGTAGAAATAGTAAACACGATAACAAATAGGGATTTGAAATAGTCCCCTAGTTAATTAGGGGGCGTTTGGGGTGCTGAGTTGGTTATTATAGTGTGTTATAATAGTTAGTAGTGTTTTGAGGTGCAAACTACTTTAGTCTGGGTTATTAATAGTTTGTGTTTGGAGCGTAAATTATTTTTGTTCGGGTAGGAAATAGTAAACACCATAACAAAGAAGAAAAGAGAGGATAGGTGAAAAATAGTAAATACTATAGGTAAATGCGAGCAATGTTGTTTACTATAGTTAATTGTAGGTTATGAATAGTTATATAAACCACTATTATATTTGGTGCCCCAAACATGGAGTGAGTTATAAATTATAATAAACCCTAAACCCTTGTCCCAAAGAACCCCTTATAGGTTATAATAGTTGTAAGCACCAACTATTATAATTGTAACTCTAAATATGGAATGAGCTATATATAATAGCCCACTCCACCAACTTCAAGTTGCTGGCCCAAACATCTCCCTAGAGTTTAGAGTTAAGGGGAAAAAAATTAAATGAATTAGGTTACCCAATATCTAGGAATGATATAATCAAACCATCGAGACCAAATTAGAACTTTTAAACCCACGAGGACGAGAGACTACTAAAGTTGAAGTCCAAATCATGGTGACTAATTAAATTGAAAACTTTAAATCTAGAGATGAAATTGAAACTTTTTTCAAATGATGGACCAAATCTATAGTTCAACTATTATTTTATGTCTTTATGAACCCATGTTGGAAAATTTGATGAATAAGCTTGGTTTTTGTTGCAGGGTGTGGAATTACTAGAGGCTTCTTTGCAGTCAAAGACAGTTCTAACTAACGCGTTTCTGAAAAGACGAAGATCACACATTGACAGTAGTGATGTTAAGCTTTCTGAAGTTGTTAAGCCTTCTGTTTAA ATGATGTTGACAACAATGGAACAAACCGATGTGAGATTGAAGCTTCTGATAGACACAAAAACAGAACGAGTTCTTTACGGTGAAGCAAACAAGAAGTTCATAGACTTTCTTTTCAATCTACTTTCCCTCCCAGTTGGGGCTGTAATTAGGCTGTTGAAAAAGGATGGCATGGTGGGGTGTTTGGGAAATCTGTACGAGAGTGTAGAAACCTTGAACGAGTCCTATTTGCAGCCAAATCAAAGCAAAGATATAGTCCTAAAACCCAAAGTCTTATTCAATTCTTTCACCAAACTTTTGGCTAATATTGTTGTCCCTGCTGCAGCTAAACCACCTGCTACATTTTATTGCCATAATGGATCATATAGCAGCTGCCGTGGTTACATATGGACGCCTCCAAATGCAGGAATTCAACCATCTCCTGGTAGGGGATTTGTGAAGGATTTGGCCACTTACATAGTGATGGATGACCTTACTGTCAAGCACATTTCTGACTTCTCCATTACAACTCTTTTGAAAAAGTTCAATATCAAGGATGTGGATTCTTTGGAGGAGAAAGGTGTGGAATTACTAGAGGCTTCTTTGCAGTCAAAGACAGTTCTAACTAACGCGTTTCTGAAAAGACGAAGATCACACATTGACAGTAGTGATGTTAAGCTTTCTGAAGTTGTTAAGCCTTCTGTTTAA ATGATGTTGACAACAATGGAACAAACCGATGTGAGATTGAAGCTTCTGATAGACACAAAAACAGAACGAGTTCTTTACGGTGAAGCAAACAAGAAGTTCATAGACTTTCTTTTCAATCTACTTTCCCTCCCAGTTGGGGCTGTAATTAGGCTGTTGAAAAAGGATGGCATGGTGGGGTGTTTGGGAAATCTGTACGAGAGTGTAGAAACCTTGAACGAGTCCTATTTGCAGCCAAATCAAAGCAAAGATATAGTCCTAAAACCCAAAGTCTTATTCAATTCTTTCACCAAACTTTTGGCTAATATTGTTGTCCCTGCTGCAGCTAAACCACCTGCTACATTTTATTGCCATAATGGATCATATAGCAGCTGCCGTGGTTACATATGGACGCCTCCAAATGCAGGAATTCAACCATCTCCTGGTAGGGGATTTGTGAAGGATTTGGCCACTTACATAGTGATGGATGACCTTACTGTCAAGCACATTTCTGACTTCTCCATTACAACTCTTTTGAAAAAGTTCAATATCAAGGATGTGGATTCTTTGGAGGAGAAAGGTGTGGAATTACTAGAGGCTTCTTTGCAGTCAAAGACAGTTCTAACTAACGCGTTTCTGAAAAGACGAAGATCACACATTGACAGTAGTGATGTTAAGCTTTCTGAAGTTGTTAAGCCTTCTGTTTAA MMLTTMEQTDVRLKLLIDTKTERVLYGEANKKFIDFLFNLLSLPVGAVIRLLKKDGMVGCLGNLYESVETLNESYLQPNQSKDIVLKPKVLFNSFTKLLANIVVPAAAKPPATFYCHNGSYSSCRGYIWTPPNAGIQPSPGRGFVKDLATYIVMDDLTVKHISDFSITTLLKKFNIKDVDSLEEKGVELLEASLQSKTVLTNAFLKRRRSHIDSSDVKLSEVVKPSV Homology
BLAST of Lsi04G008640 vs. ExPASy TrEMBL
Match: A0A5A7V731 (Putative DNA polymerase zeta catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00410 PE=4 SV=1) HSP 1 Score: 337.0 bits (863), Expect = 6.0e-89 Identity = 185/251 (73.71%), Postives = 198/251 (78.88%), Query Frame = 0
BLAST of Lsi04G008640 vs. ExPASy TrEMBL
Match: A0A1S3CPD6 (uncharacterized protein LOC103503094 OS=Cucumis melo OX=3656 GN=LOC103503094 PE=4 SV=1) HSP 1 Score: 337.0 bits (863), Expect = 6.0e-89 Identity = 185/251 (73.71%), Postives = 198/251 (78.88%), Query Frame = 0
BLAST of Lsi04G008640 vs. ExPASy TrEMBL
Match: A0A6J1CBJ8 (uncharacterized protein LOC111010013 OS=Momordica charantia OX=3673 GN=LOC111010013 PE=4 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 5.8e-52 Identity = 129/240 (53.75%), Postives = 162/240 (67.50%), Query Frame = 0
BLAST of Lsi04G008640 vs. ExPASy TrEMBL
Match: A0A5A7U8V2 (DUF674 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3341G00030 PE=4 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48 Identity = 125/228 (54.82%), Postives = 149/228 (65.35%), Query Frame = 0
BLAST of Lsi04G008640 vs. ExPASy TrEMBL
Match: A0A1S3CGQ2 (uncharacterized protein LOC103500268 OS=Cucumis melo OX=3656 GN=LOC103500268 PE=4 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48 Identity = 125/228 (54.82%), Postives = 149/228 (65.35%), Query Frame = 0
BLAST of Lsi04G008640 vs. NCBI nr
Match: XP_031741245.1 (uncharacterized protein LOC105435653 [Cucumis sativus] >KAE8647978.1 hypothetical protein Csa_000490 [Cucumis sativus]) HSP 1 Score: 340.1 bits (871), Expect = 1.5e-89 Identity = 189/252 (75.00%), Postives = 201/252 (79.76%), Query Frame = 0
BLAST of Lsi04G008640 vs. NCBI nr
Match: XP_008465479.1 (PREDICTED: uncharacterized protein LOC103503094 [Cucumis melo] >KAA0062236.1 putative DNA polymerase zeta catalytic subunit [Cucumis melo var. makuwa]) HSP 1 Score: 337.0 bits (863), Expect = 1.2e-88 Identity = 185/251 (73.71%), Postives = 198/251 (78.88%), Query Frame = 0
BLAST of Lsi04G008640 vs. NCBI nr
Match: XP_022138964.1 (uncharacterized protein LOC111010013 [Momordica charantia]) HSP 1 Score: 214.2 bits (544), Expect = 1.2e-51 Identity = 129/240 (53.75%), Postives = 162/240 (67.50%), Query Frame = 0
BLAST of Lsi04G008640 vs. NCBI nr
Match: XP_008461735.1 (PREDICTED: uncharacterized protein LOC103500268 [Cucumis melo] >KAA0052182.1 DUF674 domain-containing protein [Cucumis melo var. makuwa] >TYJ97778.1 DUF674 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 203.0 bits (515), Expect = 2.8e-48 Identity = 125/228 (54.82%), Postives = 149/228 (65.35%), Query Frame = 0
BLAST of Lsi04G008640 vs. NCBI nr
Match: XP_038891339.1 (uncharacterized protein LOC120080784 [Benincasa hispida] >XP_038891341.1 uncharacterized protein LOC120080784 [Benincasa hispida]) HSP 1 Score: 199.9 bits (507), Expect = 2.3e-47 Identity = 129/275 (46.91%), Postives = 163/275 (59.27%), Query Frame = 0
BLAST of Lsi04G008640 vs. TAIR 10
Match: AT5G01130.1 (Protein of unknown function (DUF674) ) HSP 1 Score: 79.7 bits (195), Expect = 3.3e-15 Identity = 69/230 (30.00%), Postives = 105/230 (45.65%), Query Frame = 0
BLAST of Lsi04G008640 vs. TAIR 10
Match: AT5G01120.1 (Protein of unknown function (DUF674) ) HSP 1 Score: 73.2 bits (178), Expect = 3.1e-13 Identity = 68/244 (27.87%), Postives = 106/244 (43.44%), Query Frame = 0
BLAST of Lsi04G008640 vs. TAIR 10
Match: AT3G09110.1 (Protein of unknown function (DUF674) ) HSP 1 Score: 72.8 bits (177), Expect = 4.0e-13 Identity = 67/234 (28.63%), Postives = 102/234 (43.59%), Query Frame = 0
BLAST of Lsi04G008640 vs. TAIR 10
Match: AT5G43240.1 (Protein of unknown function (DUF674) ) HSP 1 Score: 71.2 bits (173), Expect = 1.2e-12 Identity = 68/245 (27.76%), Postives = 112/245 (45.71%), Query Frame = 0
BLAST of Lsi04G008640 vs. TAIR 10
Match: AT5G43240.3 (Protein of unknown function (DUF674) ) HSP 1 Score: 71.2 bits (173), Expect = 1.2e-12 Identity = 68/245 (27.76%), Postives = 112/245 (45.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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