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Lsi04G008620 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGTGAGTTTGAAATATGAACTTCTTGATTTTAGCACATAGAGATGGAGATGATCTTTTACACATATAGGTTGACTTAAACTCTTGTTGGCACGGTAATCGATAATTTAAAATCGTTGTTGCTATACTAAATTAATGCATACAGATTCAAATTAAAGTGGTTGGCATAGAAAATGTCACAACAAACAAGTAAAGTGAGATTGAAGCTTTTAATAGACAGAGAGACAAAAAGTGTTCTTTATGGGGAAGCTGACAAAGATTTCATTGACTTTCTTTTCAGTCTACTTTCCCTTCCACTTGGAGCTGTAATTAGGCTGTTGCAAAAACAACACATGGTTGGTTGCTTGGGAAATCTATACGACAGTATAGAAACCTTAAACTAGACATGTTTTATTCAACCAAGCCAAACCAAAGAAGTCTTGTTGAGACCCAAAGTCTCACTCAATTGTTCCACAAACCTTATGCCTTATATTATTAATCAAACCTCTAGTAGTTCAGTTAGTGTTGCTCCTTCAAGTACTTCGAGTTATAGTTGTAGTTCATTTGGTGCACCTTTAAGTACTTCGAGTTTTGGTTTAAATGCTCCTCCTAGTTCATTTAGCTTTGGTTCTCCTTTAAGTACTTCGGGTTTTTGTTTTAGTAGTACTCCTGATATTACATTATTTGGTGCTTGTTCAAGTATTCCAAGTGGAAGTGGAAGCACGAGGTGCGAAACAAGTAGTAGTAGTAGTGGTGATGTATTAAAAGTGGGATTTGTGAAGGGATTGGCAACTTACATTGTGATGGATGACCTAACTGTGAAGCATATATCTGACTTCTCCATAGTTTCGATTTTAAGAAAGTTCAATTTCAAGGATGCAGATGCTTTGCAGGAGAAAGTCGTCACTTTGAATGTTCATGAGGTAAATATATGTATATGTCTACACTATTTCACTTTATGGTTGGTTAGTTTGACATCGTTTATGGTGACGTGTTTGTCTTCTTTATTGTTTTTAGAAAAAGTTGAAGAAGTATGATTCGGGTGTATGATGGGCTGGGTGTTAAAAATGTGTCAACTTAGTTAAGATGCGTATTGATTTGGGAGTATGATGAGAGTGCTAAGAAGTGTCAATCTAGTTGAGATATTTAAGTGCATCTATGATTTTTTTCAAAAAAAAAAAAAAAAAAAAATTGAAGGAAGATTGTTGAGGATAGCTTTTGTTTCCTAGTTACTCATTGTCTAAAAAAAGGAAATATTTTGGATTGTAACAATTTTTTCTTTTTTGAAAATTTATAAGCTTTGAGTTTTTTTTTCAAACCTAGTTTTTAATCCAATTTTAAAAACAAAAACATATTTAAATTATTTTCAAACTTAGTTTATTGGATTTTAAAAACATGGTTAGGAAGTAGATAATAAAGGATATAACAGTTTAAAAACTTAAATTTTAAATTCAATTTTTTTCCCAAACTATTAGTAAGATAATCATTATGTATTCTTGTATAAACTAAAATTTGATTGTTTAACAAAAAAAATTATTTAGAATTTTAGAGATAAATGAAAAAAGTGGAATTACTATATTTTTTAAAAAAAAACGGAAACCGAATTAACTTTGAACTTTTAAGTAAAAAGCAAAATTTAGGGAATAATGAATCAATATTTTGTTTTTTTTTTTTAATTTTTTTTGTAGGGCGTGGAATTACTTAAGGCGTGTCTACAGTCAAAGATGTTCTAA ATGGAGAAAATGTCACAACAAACAAGTAAAGTGAGATTGAAGCTTTTAATAGACAGAGAGACAAAAAGTGTTCTTTATGGGGAAGCTGACAAAGATTTCATTGACTTTCTTTTCAGTCTACTTTCCCTTCCACTTGGAGCTGTAATTAGGCTGTTGCAAAAACAACACATGACATGTTTTATTCAACCAAGCCAAACCAAAGAAGTCTTGTTGAGACCCAAAGTCTCACTCAATTGTTCCACAAACCTTATGCCTTATATTATTAATCAAACCTCTAGTAGTTCAGTTAGTGTTGCTCCTTCAAGTACTTCGAGTTATAGTTGTAGTTCATTTGGTGCACCTTTAAGTACTTCGAGTTTTGGTTTAAATGCTCCTCCTAGTTCATTTAGCTTTGGTTCTCCTTTAAGTACTTCGGGTTTTTGTTTTAGTAGTACTCCTGATATTACATTATTTGGTGCTTGTTCAAGTATTCCAAGTGGAAGTGGAAGCACGAGGTGCGAAACAAGTAGTAGTAGTAGTGGTGATGTATTAAAAGTGGGATTTGTGAAGGGATTGGCAACTTACATTGTGATGGATGACCTAACTGTGAAGCATATATCTGACTTCTCCATAGTTTCGATTTTAAGAAAGTTCAATTTCAAGGATGCAGATGCTTTGCAGGAGAAAGTCGTCACTTTGAATGTTCATGAGGGCGTGGAATTACTTAAGGCGTGTCTACAGTCAAAGATGTTCTAA ATGGAGAAAATGTCACAACAAACAAGTAAAGTGAGATTGAAGCTTTTAATAGACAGAGAGACAAAAAGTGTTCTTTATGGGGAAGCTGACAAAGATTTCATTGACTTTCTTTTCAGTCTACTTTCCCTTCCACTTGGAGCTGTAATTAGGCTGTTGCAAAAACAACACATGACATGTTTTATTCAACCAAGCCAAACCAAAGAAGTCTTGTTGAGACCCAAAGTCTCACTCAATTGTTCCACAAACCTTATGCCTTATATTATTAATCAAACCTCTAGTAGTTCAGTTAGTGTTGCTCCTTCAAGTACTTCGAGTTATAGTTGTAGTTCATTTGGTGCACCTTTAAGTACTTCGAGTTTTGGTTTAAATGCTCCTCCTAGTTCATTTAGCTTTGGTTCTCCTTTAAGTACTTCGGGTTTTTGTTTTAGTAGTACTCCTGATATTACATTATTTGGTGCTTGTTCAAGTATTCCAAGTGGAAGTGGAAGCACGAGGTGCGAAACAAGTAGTAGTAGTAGTGGTGATGTATTAAAAGTGGGATTTGTGAAGGGATTGGCAACTTACATTGTGATGGATGACCTAACTGTGAAGCATATATCTGACTTCTCCATAGTTTCGATTTTAAGAAAGTTCAATTTCAAGGATGCAGATGCTTTGCAGGAGAAAGTCGTCACTTTGAATGTTCATGAGGGCGTGGAATTACTTAAGGCGTGTCTACAGTCAAAGATGTTCTAA MEKMSQQTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMTCFIQPSQTKEVLLRPKVSLNCSTNLMPYIINQTSSSSVSVAPSSTSSYSCSSFGAPLSTSSFGLNAPPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCETSSSSSGDVLKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNVHEGVELLKACLQSKMF Homology
BLAST of Lsi04G008620 vs. ExPASy TrEMBL
Match: A0A5A7V731 (Putative DNA polymerase zeta catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00410 PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 7.2e-32 Identity = 103/252 (40.87%), Postives = 145/252 (57.54%), Query Frame = 0
BLAST of Lsi04G008620 vs. ExPASy TrEMBL
Match: A0A1S3CPD6 (uncharacterized protein LOC103503094 OS=Cucumis melo OX=3656 GN=LOC103503094 PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 7.2e-32 Identity = 103/252 (40.87%), Postives = 145/252 (57.54%), Query Frame = 0
BLAST of Lsi04G008620 vs. ExPASy TrEMBL
Match: A0A6J1CBJ8 (uncharacterized protein LOC111010013 OS=Momordica charantia OX=3673 GN=LOC111010013 PE=4 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 2.0e-29 Identity = 102/252 (40.48%), Postives = 143/252 (56.75%), Query Frame = 0
BLAST of Lsi04G008620 vs. ExPASy TrEMBL
Match: A0A5A7U8V2 (DUF674 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3341G00030 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28 Identity = 101/254 (39.76%), Postives = 142/254 (55.91%), Query Frame = 0
BLAST of Lsi04G008620 vs. ExPASy TrEMBL
Match: A0A251T205 (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0370581 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28 Identity = 115/269 (42.75%), Postives = 151/269 (56.13%), Query Frame = 0
BLAST of Lsi04G008620 vs. NCBI nr
Match: XP_038891339.1 (uncharacterized protein LOC120080784 [Benincasa hispida] >XP_038891341.1 uncharacterized protein LOC120080784 [Benincasa hispida]) HSP 1 Score: 279.6 bits (714), Expect = 2.5e-71 Identity = 174/268 (64.93%), Postives = 194/268 (72.39%), Query Frame = 0
BLAST of Lsi04G008620 vs. NCBI nr
Match: XP_031741245.1 (uncharacterized protein LOC105435653 [Cucumis sativus] >KAE8647978.1 hypothetical protein Csa_000490 [Cucumis sativus]) HSP 1 Score: 150.6 bits (379), Expect = 1.8e-32 Identity = 106/253 (41.90%), Postives = 149/253 (58.89%), Query Frame = 0
BLAST of Lsi04G008620 vs. NCBI nr
Match: XP_008465479.1 (PREDICTED: uncharacterized protein LOC103503094 [Cucumis melo] >KAA0062236.1 putative DNA polymerase zeta catalytic subunit [Cucumis melo var. makuwa]) HSP 1 Score: 147.5 bits (371), Expect = 1.5e-31 Identity = 103/252 (40.87%), Postives = 145/252 (57.54%), Query Frame = 0
BLAST of Lsi04G008620 vs. NCBI nr
Match: XP_022138964.1 (uncharacterized protein LOC111010013 [Momordica charantia]) HSP 1 Score: 139.4 bits (350), Expect = 4.0e-29 Identity = 102/252 (40.48%), Postives = 143/252 (56.75%), Query Frame = 0
BLAST of Lsi04G008620 vs. NCBI nr
Match: XP_008461735.1 (PREDICTED: uncharacterized protein LOC103500268 [Cucumis melo] >KAA0052182.1 DUF674 domain-containing protein [Cucumis melo var. makuwa] >TYJ97778.1 DUF674 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 136.0 bits (341), Expect = 4.5e-28 Identity = 101/254 (39.76%), Postives = 142/254 (55.91%), Query Frame = 0
BLAST of Lsi04G008620 vs. TAIR 10
Match: AT5G01120.1 (Protein of unknown function (DUF674) ) HSP 1 Score: 54.7 bits (130), Expect = 1.2e-07 Identity = 63/254 (24.80%), Postives = 106/254 (41.73%), Query Frame = 0
BLAST of Lsi04G008620 vs. TAIR 10
Match: AT3G09110.1 (Protein of unknown function (DUF674) ) HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05 Identity = 66/246 (26.83%), Postives = 100/246 (40.65%), Query Frame = 0
BLAST of Lsi04G008620 vs. TAIR 10
Match: AT5G43240.1 (Protein of unknown function (DUF674) ) HSP 1 Score: 46.6 bits (109), Expect = 3.3e-05 Identity = 61/254 (24.02%), Postives = 106/254 (41.73%), Query Frame = 0
BLAST of Lsi04G008620 vs. TAIR 10
Match: AT5G43240.3 (Protein of unknown function (DUF674) ) HSP 1 Score: 46.6 bits (109), Expect = 3.3e-05 Identity = 61/254 (24.02%), Postives = 106/254 (41.73%), Query Frame = 0
BLAST of Lsi04G008620 vs. TAIR 10
Match: AT5G01150.1 (Protein of unknown function (DUF674) ) HSP 1 Score: 43.9 bits (102), Expect = 2.2e-04 Identity = 61/245 (24.90%), Postives = 97/245 (39.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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