Lsi04G008620 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G008620
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein of unknown function (DUF674)
Locationchr04: 8426676 .. 8428390 (-)
RNA-Seq ExpressionLsi04G008620
SyntenyLsi04G008620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTGAGTTTGAAATATGAACTTCTTGATTTTAGCACATAGAGATGGAGATGATCTTTTACACATATAGGTTGACTTAAACTCTTGTTGGCACGGTAATCGATAATTTAAAATCGTTGTTGCTATACTAAATTAATGCATACAGATTCAAATTAAAGTGGTTGGCATAGAAAATGTCACAACAAACAAGTAAAGTGAGATTGAAGCTTTTAATAGACAGAGAGACAAAAAGTGTTCTTTATGGGGAAGCTGACAAAGATTTCATTGACTTTCTTTTCAGTCTACTTTCCCTTCCACTTGGAGCTGTAATTAGGCTGTTGCAAAAACAACACATGGTTGGTTGCTTGGGAAATCTATACGACAGTATAGAAACCTTAAACTAGACATGTTTTATTCAACCAAGCCAAACCAAAGAAGTCTTGTTGAGACCCAAAGTCTCACTCAATTGTTCCACAAACCTTATGCCTTATATTATTAATCAAACCTCTAGTAGTTCAGTTAGTGTTGCTCCTTCAAGTACTTCGAGTTATAGTTGTAGTTCATTTGGTGCACCTTTAAGTACTTCGAGTTTTGGTTTAAATGCTCCTCCTAGTTCATTTAGCTTTGGTTCTCCTTTAAGTACTTCGGGTTTTTGTTTTAGTAGTACTCCTGATATTACATTATTTGGTGCTTGTTCAAGTATTCCAAGTGGAAGTGGAAGCACGAGGTGCGAAACAAGTAGTAGTAGTAGTGGTGATGTATTAAAAGTGGGATTTGTGAAGGGATTGGCAACTTACATTGTGATGGATGACCTAACTGTGAAGCATATATCTGACTTCTCCATAGTTTCGATTTTAAGAAAGTTCAATTTCAAGGATGCAGATGCTTTGCAGGAGAAAGTCGTCACTTTGAATGTTCATGAGGTAAATATATGTATATGTCTACACTATTTCACTTTATGGTTGGTTAGTTTGACATCGTTTATGGTGACGTGTTTGTCTTCTTTATTGTTTTTAGAAAAAGTTGAAGAAGTATGATTCGGGTGTATGATGGGCTGGGTGTTAAAAATGTGTCAACTTAGTTAAGATGCGTATTGATTTGGGAGTATGATGAGAGTGCTAAGAAGTGTCAATCTAGTTGAGATATTTAAGTGCATCTATGATTTTTTTCAAAAAAAAAAAAAAAAAAAAATTGAAGGAAGATTGTTGAGGATAGCTTTTGTTTCCTAGTTACTCATTGTCTAAAAAAAGGAAATATTTTGGATTGTAACAATTTTTTCTTTTTTGAAAATTTATAAGCTTTGAGTTTTTTTTTCAAACCTAGTTTTTAATCCAATTTTAAAAACAAAAACATATTTAAATTATTTTCAAACTTAGTTTATTGGATTTTAAAAACATGGTTAGGAAGTAGATAATAAAGGATATAACAGTTTAAAAACTTAAATTTTAAATTCAATTTTTTTCCCAAACTATTAGTAAGATAATCATTATGTATTCTTGTATAAACTAAAATTTGATTGTTTAACAAAAAAAATTATTTAGAATTTTAGAGATAAATGAAAAAAGTGGAATTACTATATTTTTTAAAAAAAAACGGAAACCGAATTAACTTTGAACTTTTAAGTAAAAAGCAAAATTTAGGGAATAATGAATCAATATTTTGTTTTTTTTTTTTAATTTTTTTTGTAGGGCGTGGAATTACTTAAGGCGTGTCTACAGTCAAAGATGTTCTAA

mRNA sequence

ATGGAGAAAATGTCACAACAAACAAGTAAAGTGAGATTGAAGCTTTTAATAGACAGAGAGACAAAAAGTGTTCTTTATGGGGAAGCTGACAAAGATTTCATTGACTTTCTTTTCAGTCTACTTTCCCTTCCACTTGGAGCTGTAATTAGGCTGTTGCAAAAACAACACATGACATGTTTTATTCAACCAAGCCAAACCAAAGAAGTCTTGTTGAGACCCAAAGTCTCACTCAATTGTTCCACAAACCTTATGCCTTATATTATTAATCAAACCTCTAGTAGTTCAGTTAGTGTTGCTCCTTCAAGTACTTCGAGTTATAGTTGTAGTTCATTTGGTGCACCTTTAAGTACTTCGAGTTTTGGTTTAAATGCTCCTCCTAGTTCATTTAGCTTTGGTTCTCCTTTAAGTACTTCGGGTTTTTGTTTTAGTAGTACTCCTGATATTACATTATTTGGTGCTTGTTCAAGTATTCCAAGTGGAAGTGGAAGCACGAGGTGCGAAACAAGTAGTAGTAGTAGTGGTGATGTATTAAAAGTGGGATTTGTGAAGGGATTGGCAACTTACATTGTGATGGATGACCTAACTGTGAAGCATATATCTGACTTCTCCATAGTTTCGATTTTAAGAAAGTTCAATTTCAAGGATGCAGATGCTTTGCAGGAGAAAGTCGTCACTTTGAATGTTCATGAGGGCGTGGAATTACTTAAGGCGTGTCTACAGTCAAAGATGTTCTAA

Coding sequence (CDS)

ATGGAGAAAATGTCACAACAAACAAGTAAAGTGAGATTGAAGCTTTTAATAGACAGAGAGACAAAAAGTGTTCTTTATGGGGAAGCTGACAAAGATTTCATTGACTTTCTTTTCAGTCTACTTTCCCTTCCACTTGGAGCTGTAATTAGGCTGTTGCAAAAACAACACATGACATGTTTTATTCAACCAAGCCAAACCAAAGAAGTCTTGTTGAGACCCAAAGTCTCACTCAATTGTTCCACAAACCTTATGCCTTATATTATTAATCAAACCTCTAGTAGTTCAGTTAGTGTTGCTCCTTCAAGTACTTCGAGTTATAGTTGTAGTTCATTTGGTGCACCTTTAAGTACTTCGAGTTTTGGTTTAAATGCTCCTCCTAGTTCATTTAGCTTTGGTTCTCCTTTAAGTACTTCGGGTTTTTGTTTTAGTAGTACTCCTGATATTACATTATTTGGTGCTTGTTCAAGTATTCCAAGTGGAAGTGGAAGCACGAGGTGCGAAACAAGTAGTAGTAGTAGTGGTGATGTATTAAAAGTGGGATTTGTGAAGGGATTGGCAACTTACATTGTGATGGATGACCTAACTGTGAAGCATATATCTGACTTCTCCATAGTTTCGATTTTAAGAAAGTTCAATTTCAAGGATGCAGATGCTTTGCAGGAGAAAGTCGTCACTTTGAATGTTCATGAGGGCGTGGAATTACTTAAGGCGTGTCTACAGTCAAAGATGTTCTAA

Protein sequence

MEKMSQQTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMTCFIQPSQTKEVLLRPKVSLNCSTNLMPYIINQTSSSSVSVAPSSTSSYSCSSFGAPLSTSSFGLNAPPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCETSSSSSGDVLKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNVHEGVELLKACLQSKMF
Homology
BLAST of Lsi04G008620 vs. ExPASy TrEMBL
Match: A0A5A7V731 (Putative DNA polymerase zeta catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00410 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 7.2e-32
Identity = 103/252 (40.87%), Postives = 145/252 (57.54%), Query Frame = 0

Query: 7   QTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMT-------- 66
           + + V LKLLID++T+ VLYGEADK FIDFL ++LSLPLG VI LL+K  M         
Sbjct: 2   EQTDVTLKLLIDKKTERVLYGEADKKFIDFLVNVLSLPLGGVIMLLKKNGMVGCLGNLYE 61

Query: 67  -------CFIQPSQTKEVLLRPKVSLNCSTNLMPYIINQTSSSSVSVAPSSTSSY-SCSS 126
                   ++QP+Q+++ +L+PK+  N  T L+P +    +++  ++   + S+Y SC +
Sbjct: 62  SVETLNKSYLQPNQSRDTVLKPKILFNSFTKLLPNVHVPAAATPPAIFYCNGSTYSSCRA 121

Query: 127 FGAPLSTSSFGLNAPPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCETSS 186
           +                       +S S        D  L  +C+ +       + E   
Sbjct: 122 Y-----------------------VSYSSSAVCPKCDKKLSQSCTYVT----PPKAENQP 181

Query: 187 SSSGDVLKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNVHE 243
           +S G     G VK LATYIVMDDLTVKHISDFSI ++L+KFN KD D+L+EKV+TL+V E
Sbjct: 182 ASGG-----GSVKDLATYIVMDDLTVKHISDFSITTLLKKFNIKDVDSLEEKVITLDVDE 221

BLAST of Lsi04G008620 vs. ExPASy TrEMBL
Match: A0A1S3CPD6 (uncharacterized protein LOC103503094 OS=Cucumis melo OX=3656 GN=LOC103503094 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 7.2e-32
Identity = 103/252 (40.87%), Postives = 145/252 (57.54%), Query Frame = 0

Query: 7   QTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMT-------- 66
           + + V LKLLID++T+ VLYGEADK FIDFL ++LSLPLG VI LL+K  M         
Sbjct: 2   EQTDVTLKLLIDKKTERVLYGEADKKFIDFLVNVLSLPLGGVIMLLKKNGMVGCLGNLYE 61

Query: 67  -------CFIQPSQTKEVLLRPKVSLNCSTNLMPYIINQTSSSSVSVAPSSTSSY-SCSS 126
                   ++QP+Q+++ +L+PK+  N  T L+P +    +++  ++   + S+Y SC +
Sbjct: 62  SVETLNKSYLQPNQSRDTVLKPKILFNSFTKLLPNVHVPAAATPPAIFYCNGSTYSSCRA 121

Query: 127 FGAPLSTSSFGLNAPPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCETSS 186
           +                       +S S        D  L  +C+ +       + E   
Sbjct: 122 Y-----------------------VSYSSSAVCPKCDKKLSQSCTYVT----PPKAENQP 181

Query: 187 SSSGDVLKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNVHE 243
           +S G     G VK LATYIVMDDLTVKHISDFSI ++L+KFN KD D+L+EKV+TL+V E
Sbjct: 182 ASGG-----GSVKDLATYIVMDDLTVKHISDFSITTLLKKFNIKDVDSLEEKVITLDVDE 221

BLAST of Lsi04G008620 vs. ExPASy TrEMBL
Match: A0A6J1CBJ8 (uncharacterized protein LOC111010013 OS=Momordica charantia OX=3673 GN=LOC111010013 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-29
Identity = 102/252 (40.48%), Postives = 143/252 (56.75%), Query Frame = 0

Query: 8   TSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMT--------- 67
           ++ VRLKLLID + + VL+GEADK+ IDFLF+LLSLPLG VIRLL+KQ M          
Sbjct: 3   SANVRLKLLIDSKEQRVLFGEADKNVIDFLFNLLSLPLGTVIRLLKKQGMVGCLGNLYES 62

Query: 68  ------CFIQPSQTKEVLLRPKVSL--NCSTNLMPYIINQTSSSSVSVAPSSTSSYSCSS 127
                  ++QP+Q+K++LL+PKVS   + ST L+P         ++ ++ ++T+ Y C+ 
Sbjct: 63  VETLNDTYLQPNQSKDILLKPKVSFCGSSSTMLLP---------NIDLSAAATTFYLCN- 122

Query: 128 FGAPLSTSSFGLNAPPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCETSS 187
                ST+        S          +  C      +T  G     PS S +T      
Sbjct: 123 -----STAHANCRRSVSD-------GPNAICPKCNVPMTQVGTFVKPPSASATTVAAAKE 182

Query: 188 SSSGDVLKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNVHE 243
                    GFVKG+ TY+VMDDL+VK +S  S +++L KFN K+  AL+EKVVTL+V+E
Sbjct: 183 DEG------GFVKGVVTYMVMDDLSVKPMSTISSIALLNKFNVKEVGALEEKVVTLDVNE 226

BLAST of Lsi04G008620 vs. ExPASy TrEMBL
Match: A0A5A7U8V2 (DUF674 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3341G00030 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28
Identity = 101/254 (39.76%), Postives = 142/254 (55.91%), Query Frame = 0

Query: 4   MSQQTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMT----- 63
           M+    +VRLKLLID E K VL+GEADK+ IDFLF+LLSLPLG VIRLL+KQ M      
Sbjct: 1   MAGSGGEVRLKLLIDSEQKRVLFGEADKNLIDFLFNLLSLPLGTVIRLLKKQGMVGSLAN 60

Query: 64  ----------CFIQPSQTKEVLLRPKVSLNCSTNLMPYIINQTSSSSVSVAPSSTSSYSC 123
                      ++QP+Q+K+ LL+PKVS + ST L+P I +        +   +   Y+ 
Sbjct: 61  LYESVEALNDTYLQPNQSKDNLLKPKVSFSASTLLLPNIESYADKKKFYLC-GNRCGYNV 120

Query: 124 SSFGAPLSTSSFGLNAPPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCET 183
           +S   P +      NA     +  +P + +     +T D+  FG                
Sbjct: 121 AS--NPTAVCPSCRNAMSRECALVNPPNAN---TQATQDVGEFG---------------- 180

Query: 184 SSSSSGDVLKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNV 243
                      GFVKG+ TY+VMDDL+VK +S  S +++L KFN K+  AL+EKV+TL+V
Sbjct: 181 -----------GFVKGVVTYMVMDDLSVKPMSTISSITLLNKFNIKEVGALEEKVITLDV 221

BLAST of Lsi04G008620 vs. ExPASy TrEMBL
Match: A0A251T205 (Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0370581 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28
Identity = 115/269 (42.75%), Postives = 151/269 (56.13%), Query Frame = 0

Query: 8   TSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHM---------- 67
           TSKV LKLLID++ + VL+ EA KDFIDFLFSLL LP+G VIRLL  + +          
Sbjct: 3   TSKVTLKLLIDKKQQRVLFAEAGKDFIDFLFSLLVLPVGTVIRLLGDRDIVGGLAKLYKS 62

Query: 68  -----TCFIQPSQTKEVLLRPKVSLNCSTNLMPYIINQT-SSSSVSVAPSSTSS-YSCSS 127
                  +IQP+Q K+VLL+PK S   S+  +P + N+  SSS+ S  P S SS Y C  
Sbjct: 63  VSDLNNDYIQPNQNKDVLLKPKSSAPFSSPKLPLLPNEAFSSSTTSPTPDSASSLYKCQH 122

Query: 128 FGAPLSTSSFGLNAPPS------SFSFGSPLSTSGF-CFSSTPDI--TLFGACSSIPSGS 187
                  S++    P S      SFS     STS + C S + ++  T F  C S P+  
Sbjct: 123 CNI---LSTYPRTCPVSHCNRTMSFSPAPGSSTSLYKCESKSCNMRSTTFRMCPSCPN-- 182

Query: 188 GSTRCETSSSSSGDVLK--------VGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNF 243
                +  S++ G VLK        VGFVKGL TY+VMDDL V  +S  S +++L KFN 
Sbjct: 183 -----KYISAADGFVLKPAADAKPVVGFVKGLVTYMVMDDLAVSPMSTISNITLLNKFNI 242

BLAST of Lsi04G008620 vs. NCBI nr
Match: XP_038891339.1 (uncharacterized protein LOC120080784 [Benincasa hispida] >XP_038891341.1 uncharacterized protein LOC120080784 [Benincasa hispida])

HSP 1 Score: 279.6 bits (714), Expect = 2.5e-71
Identity = 174/268 (64.93%), Postives = 194/268 (72.39%), Query Frame = 0

Query: 4   MSQQTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHM------ 63
           M+QQT+ VRLKLLID E +SVLYGEADKDFIDFLF+LLSLPLGAVIRLL KQHM      
Sbjct: 1   MAQQTTNVRLKLLIDTEKRSVLYGEADKDFIDFLFNLLSLPLGAVIRLLTKQHMIGCLGN 60

Query: 64  ----------TCFIQPSQTKEVLLRPKVSLNCSTNLMPYIINQTSSSSV--SVAPSSTSS 123
                     TCFI+P Q+KE LLRPKVSLNCST L+PYII+QTSSSS+  +   SST S
Sbjct: 61  LYESIETLNETCFIKPRQSKETLLRPKVSLNCSTKLLPYIIDQTSSSSIGDNAPNSSTWS 120

Query: 124 YSCSSFGAPLSTSSFGLNAPPSSFSFGSPLSTSGFCFSSTPDITL--------FGA--CS 183
           + CSSFGA  +T S       S   FG+  STS FCFS+ P  +         F +  CS
Sbjct: 121 HGCSSFGAHSTTLS------DSCSLFGAASSTSSFCFSTIPPSSFSLGSLSSGFSSIGCS 180

Query: 184 SIPSGSGSTRCETSSSSSGDVLKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKD 243
           S P  SGSTRCE SSSS G  LKVGFVKGLATYIVMDDLTVKHISDFSIVS+ RKFN KD
Sbjct: 181 STPIESGSTRCEASSSSGGGGLKVGFVKGLATYIVMDDLTVKHISDFSIVSLFRKFNIKD 240

BLAST of Lsi04G008620 vs. NCBI nr
Match: XP_031741245.1 (uncharacterized protein LOC105435653 [Cucumis sativus] >KAE8647978.1 hypothetical protein Csa_000490 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-32
Identity = 106/253 (41.90%), Postives = 149/253 (58.89%), Query Frame = 0

Query: 7   QTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHM--------- 66
           + + V LKLLID++T+ VLYGEADK FIDFL ++LSLPLG VIRLL+K  M         
Sbjct: 2   EQTDVTLKLLIDKKTERVLYGEADKKFIDFLVNVLSLPLGGVIRLLKKDGMVGCLGNLYE 61

Query: 67  ------TCFIQPSQTKEVLLRPKVSLNCSTNLMPYI-INQTSSSSVSVAPSSTSSYSCSS 126
                   ++QP+Q+++++L+PK+  N  T LMP + +   +++  ++    T SY C  
Sbjct: 62  SVETLNNSYLQPNQSRDIVLKPKIVFNSFTKLMPNVDVVPAAATPPAIFYCVTGSY-CRG 121

Query: 127 FGAPLSTSSFGLNAPPSSFSFGSPLSTSGFCFSSTPDITLFGACSSI-PSGSGSTRCETS 186
           + +                      S S FC S + +++   AC  + P  +G+      
Sbjct: 122 YVS---------------------YSCSAFCPSCSKNLS--QACRYVTPPKAGNQPAPDR 181

Query: 187 SSSSGDVLKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNVH 243
                     GFVK LATYIV DDLTVKHISDFSI ++L+KFN KD D+L+EKV+TL+V+
Sbjct: 182 ----------GFVKDLATYIVTDDLTVKHISDFSITTLLKKFNIKDVDSLEEKVITLDVN 220

BLAST of Lsi04G008620 vs. NCBI nr
Match: XP_008465479.1 (PREDICTED: uncharacterized protein LOC103503094 [Cucumis melo] >KAA0062236.1 putative DNA polymerase zeta catalytic subunit [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-31
Identity = 103/252 (40.87%), Postives = 145/252 (57.54%), Query Frame = 0

Query: 7   QTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMT-------- 66
           + + V LKLLID++T+ VLYGEADK FIDFL ++LSLPLG VI LL+K  M         
Sbjct: 2   EQTDVTLKLLIDKKTERVLYGEADKKFIDFLVNVLSLPLGGVIMLLKKNGMVGCLGNLYE 61

Query: 67  -------CFIQPSQTKEVLLRPKVSLNCSTNLMPYIINQTSSSSVSVAPSSTSSY-SCSS 126
                   ++QP+Q+++ +L+PK+  N  T L+P +    +++  ++   + S+Y SC +
Sbjct: 62  SVETLNKSYLQPNQSRDTVLKPKILFNSFTKLLPNVHVPAAATPPAIFYCNGSTYSSCRA 121

Query: 127 FGAPLSTSSFGLNAPPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCETSS 186
           +                       +S S        D  L  +C+ +       + E   
Sbjct: 122 Y-----------------------VSYSSSAVCPKCDKKLSQSCTYVT----PPKAENQP 181

Query: 187 SSSGDVLKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNVHE 243
           +S G     G VK LATYIVMDDLTVKHISDFSI ++L+KFN KD D+L+EKV+TL+V E
Sbjct: 182 ASGG-----GSVKDLATYIVMDDLTVKHISDFSITTLLKKFNIKDVDSLEEKVITLDVDE 221

BLAST of Lsi04G008620 vs. NCBI nr
Match: XP_022138964.1 (uncharacterized protein LOC111010013 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 4.0e-29
Identity = 102/252 (40.48%), Postives = 143/252 (56.75%), Query Frame = 0

Query: 8   TSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMT--------- 67
           ++ VRLKLLID + + VL+GEADK+ IDFLF+LLSLPLG VIRLL+KQ M          
Sbjct: 3   SANVRLKLLIDSKEQRVLFGEADKNVIDFLFNLLSLPLGTVIRLLKKQGMVGCLGNLYES 62

Query: 68  ------CFIQPSQTKEVLLRPKVSL--NCSTNLMPYIINQTSSSSVSVAPSSTSSYSCSS 127
                  ++QP+Q+K++LL+PKVS   + ST L+P         ++ ++ ++T+ Y C+ 
Sbjct: 63  VETLNDTYLQPNQSKDILLKPKVSFCGSSSTMLLP---------NIDLSAAATTFYLCN- 122

Query: 128 FGAPLSTSSFGLNAPPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCETSS 187
                ST+        S          +  C      +T  G     PS S +T      
Sbjct: 123 -----STAHANCRRSVSD-------GPNAICPKCNVPMTQVGTFVKPPSASATTVAAAKE 182

Query: 188 SSSGDVLKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNVHE 243
                    GFVKG+ TY+VMDDL+VK +S  S +++L KFN K+  AL+EKVVTL+V+E
Sbjct: 183 DEG------GFVKGVVTYMVMDDLSVKPMSTISSIALLNKFNVKEVGALEEKVVTLDVNE 226

BLAST of Lsi04G008620 vs. NCBI nr
Match: XP_008461735.1 (PREDICTED: uncharacterized protein LOC103500268 [Cucumis melo] >KAA0052182.1 DUF674 domain-containing protein [Cucumis melo var. makuwa] >TYJ97778.1 DUF674 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 4.5e-28
Identity = 101/254 (39.76%), Postives = 142/254 (55.91%), Query Frame = 0

Query: 4   MSQQTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMT----- 63
           M+    +VRLKLLID E K VL+GEADK+ IDFLF+LLSLPLG VIRLL+KQ M      
Sbjct: 1   MAGSGGEVRLKLLIDSEQKRVLFGEADKNLIDFLFNLLSLPLGTVIRLLKKQGMVGSLAN 60

Query: 64  ----------CFIQPSQTKEVLLRPKVSLNCSTNLMPYIINQTSSSSVSVAPSSTSSYSC 123
                      ++QP+Q+K+ LL+PKVS + ST L+P I +        +   +   Y+ 
Sbjct: 61  LYESVEALNDTYLQPNQSKDNLLKPKVSFSASTLLLPNIESYADKKKFYLC-GNRCGYNV 120

Query: 124 SSFGAPLSTSSFGLNAPPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCET 183
           +S   P +      NA     +  +P + +     +T D+  FG                
Sbjct: 121 AS--NPTAVCPSCRNAMSRECALVNPPNAN---TQATQDVGEFG---------------- 180

Query: 184 SSSSSGDVLKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNV 243
                      GFVKG+ TY+VMDDL+VK +S  S +++L KFN K+  AL+EKV+TL+V
Sbjct: 181 -----------GFVKGVVTYMVMDDLSVKPMSTISSITLLNKFNIKEVGALEEKVITLDV 221

BLAST of Lsi04G008620 vs. TAIR 10
Match: AT5G01120.1 (Protein of unknown function (DUF674) )

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-07
Identity = 63/254 (24.80%), Postives = 106/254 (41.73%), Query Frame = 0

Query: 7   QTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMTCFIQPSQT 66
           + S + LKLLID E   V++ EA  DF+D LFS  +LP+G ++RLL+  H +        
Sbjct: 6   ENSVINLKLLIDEEKNKVVFAEAGTDFVDILFSFSTLPMGTIVRLLEMHHKS-------- 65

Query: 67  KEVLLRPKVSLNCSTNLMPYIINQ-------TSSSSVSVAPSSTSSYSCSSFGAPLSTSS 126
                   +++ C  N+   +++         +   + + P S +   C +    +  S 
Sbjct: 66  ------RSIAIGCFNNIYASVVSMGMKHFSTQACKQMLLFPGSLNQDKCQNMKLKIDDSE 125

Query: 127 FGLNAPPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCETSS--------- 186
                             +  CF   P     G CS   S   ++RC   +         
Sbjct: 126 ------------------ATKCF-MCPMFVRSGQCSKGYSNFKTSRCSCGNFMDEVIQFQ 185

Query: 187 ----SSSGDVLKVGFVKGLAT-YIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVT 240
                 +G   +V FV+G  T +I+ DDL V+  S  S +++L+   + D D L E ++ 
Sbjct: 186 GEGGRGNGSQAEV-FVRGAHTSFIITDDLKVQVNSVGSTLNVLKDLAYADCDKLVEMILE 224

BLAST of Lsi04G008620 vs. TAIR 10
Match: AT3G09110.1 (Protein of unknown function (DUF674) )

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05
Identity = 66/246 (26.83%), Postives = 100/246 (40.65%), Query Frame = 0

Query: 5   SQQTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMTCFIQPS 64
           S +  K  L+LLID E   V+  EA KDF+D L SLL+LP+G ++RLL+K       Q  
Sbjct: 4   SFEKPKFSLRLLIDEEKNRVILAEAGKDFVDVLCSLLTLPMGTIVRLLEKH------QNP 63

Query: 65  QTKEVLLRPKVSLNCSTNLMPYIINQTSSSSVSVAPSSTSSYSCSSFGAPLSTSSFGLNA 124
           Q+  V         C  NL             SVA     ++         +   F L+ 
Sbjct: 64  QSSVV--------GCLHNLYK-----------SVADMDVDNFESQ------ACKHFLLHP 123

Query: 125 PPSSFSFGSPL-----STSGFCFSSTPDITLFGACSSIPSGSGSTRCETSSSSSGDV--- 184
             +  S G  L      T    F   P+     AC  + S   + +C   SS   ++   
Sbjct: 124 RSAKGSHGRDLKLNIDDTEATKFFVCPNFVSTEACRKLFSNVSTMKCRCGSSMHREIPVE 183

Query: 185 ---LKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNVHEGVE 240
                  F     ++++ DDL V   S   ++++L  F +   D LQE ++ +   E + 
Sbjct: 184 EQQADGVFPSCRTSFVITDDLKVALNSMGLVLNVLNDFGYSGFDKLQEMLIDVGFEEILT 217

BLAST of Lsi04G008620 vs. TAIR 10
Match: AT5G43240.1 (Protein of unknown function (DUF674) )

HSP 1 Score: 46.6 bits (109), Expect = 3.3e-05
Identity = 61/254 (24.02%), Postives = 106/254 (41.73%), Query Frame = 0

Query: 11  VRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMTCFIQPSQTKEVL 70
           ++LKLLID E   V++ EA KDF+D LFS  +LP+G ++RLL+        + SQ     
Sbjct: 10  IKLKLLIDEEKNKVVFVEAGKDFVDLLFSFFTLPMGTIVRLLE------MYKKSQ----- 69

Query: 71  LRPKVSLNCSTNLMPYIINQ-------TSSSSVSVAPSSTSSYSCSSFGAPLSTSSFGLN 130
              K+++ C +N+   +++         +   + + P S +   C +    +  S     
Sbjct: 70  ---KIAIGCFSNIYASVVSMGIEHFLTEACKQMLLYPGSLNHEKCRNLKLRVDDSE---- 129

Query: 131 APPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCE--------TSSSSSGD 190
                       +T  F     P       C+   S   ++RC         T     G 
Sbjct: 130 ------------ATKYFV---CPKFVEREQCTESYSNFNTSRCSCGVLMNEVTQLDGRGG 189

Query: 191 VLKVG-------FVKGLAT-YIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLN 242
           +   G       FV+   T +++ DDL V+  S    +++L+   + D + L EK+  +N
Sbjct: 190 LASAGNGVEGGVFVRSDHTSFMITDDLKVEITSVRLTLNVLKDLGYVDCEKLDEKIHDVN 229

BLAST of Lsi04G008620 vs. TAIR 10
Match: AT5G43240.3 (Protein of unknown function (DUF674) )

HSP 1 Score: 46.6 bits (109), Expect = 3.3e-05
Identity = 61/254 (24.02%), Postives = 106/254 (41.73%), Query Frame = 0

Query: 11  VRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMTCFIQPSQTKEVL 70
           ++LKLLID E   V++ EA KDF+D LFS  +LP+G ++RLL+        + SQ     
Sbjct: 10  IKLKLLIDEEKNKVVFVEAGKDFVDLLFSFFTLPMGTIVRLLE------MYKKSQ----- 69

Query: 71  LRPKVSLNCSTNLMPYIINQ-------TSSSSVSVAPSSTSSYSCSSFGAPLSTSSFGLN 130
              K+++ C +N+   +++         +   + + P S +   C +    +  S     
Sbjct: 70  ---KIAIGCFSNIYASVVSMGIEHFLTEACKQMLLYPGSLNHEKCRNLKLRVDDSE---- 129

Query: 131 APPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSGSTRCE--------TSSSSSGD 190
                       +T  F     P       C+   S   ++RC         T     G 
Sbjct: 130 ------------ATKYFV---CPKFVEREQCTESYSNFNTSRCSCGVLMNEVTQLDGRGG 189

Query: 191 VLKVG-------FVKGLAT-YIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLN 242
           +   G       FV+   T +++ DDL V+  S    +++L+   + D + L EK+  +N
Sbjct: 190 LASAGNGVEGGVFVRSDHTSFMITDDLKVEITSVRLTLNVLKDLGYVDCEKLDEKIHDVN 229

BLAST of Lsi04G008620 vs. TAIR 10
Match: AT5G01150.1 (Protein of unknown function (DUF674) )

HSP 1 Score: 43.9 bits (102), Expect = 2.2e-04
Identity = 61/245 (24.90%), Postives = 97/245 (39.59%), Query Frame = 0

Query: 5   SQQTSKVRLKLLIDRETKSVLYGEADKDFIDFLFSLLSLPLGAVIRLLQKQHMTCFIQPS 64
           S +  K  L+L++D E   V+  EA +DF+D LFSLL+LP+G ++RLL+    +      
Sbjct: 4   SSEEPKFSLRLIVDEEKNKVVLAEACRDFVDVLFSLLTLPMGTIVRLLENHRKS------ 63

Query: 65  QTKEVLLRPKVSLNCSTNLMPYIINQTSSSSVSVAPSSTSSYSCSSFGAPLSTSSFGLNA 124
                     V+L C  NL   +++  S    + A      Y  S     L      LN 
Sbjct: 64  --------EPVTLGCFNNLYRSVVDMGSDCFETEACKQMLVYPKSV--KDLQCKRLKLNI 123

Query: 125 PPSSFSFGSPLSTSGFCFSSTPDITLFGACSSIPSGSG-----STRCETSSSSSG---DV 184
            P+             CF  +    L+   S+     G       + E      G   D 
Sbjct: 124 NPTE---------DIKCFKCSSYCGLYSNFSTSKCRCGKFMNEEIQLENEEQDLGRFQDD 183

Query: 185 LKVGFVKGLATYIVMDDLTVKHISDFSIVSILRKFNFKDADALQEKVVTLNVHEGVELLK 242
               FV G  ++++ DDL V   S   +++ L+     D   L E+++ + V E + LL 
Sbjct: 184 DNGVFVSGRCSFVLTDDLEVSVKSTELVLNKLKSLGCADVGKLGERLLDIGVKEVLTLLG 223

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V7317.2e-3240.87Putative DNA polymerase zeta catalytic subunit OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S3CPD67.2e-3240.87uncharacterized protein LOC103503094 OS=Cucumis melo OX=3656 GN=LOC103503094 PE=... [more]
A0A6J1CBJ82.0e-2940.48uncharacterized protein LOC111010013 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A5A7U8V22.2e-2839.76DUF674 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A251T2052.2e-2842.75Uncharacterized protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr12g0370581 PE... [more]
Match NameE-valueIdentityDescription
XP_038891339.12.5e-7164.93uncharacterized protein LOC120080784 [Benincasa hispida] >XP_038891341.1 unchara... [more]
XP_031741245.11.8e-3241.90uncharacterized protein LOC105435653 [Cucumis sativus] >KAE8647978.1 hypothetica... [more]
XP_008465479.11.5e-3140.87PREDICTED: uncharacterized protein LOC103503094 [Cucumis melo] >KAA0062236.1 put... [more]
XP_022138964.14.0e-2940.48uncharacterized protein LOC111010013 [Momordica charantia][more]
XP_008461735.14.5e-2839.76PREDICTED: uncharacterized protein LOC103500268 [Cucumis melo] >KAA0052182.1 DUF... [more]
Match NameE-valueIdentityDescription
AT5G01120.11.2e-0724.80Protein of unknown function (DUF674) [more]
AT3G09110.11.1e-0526.83Protein of unknown function (DUF674) [more]
AT5G43240.13.3e-0524.02Protein of unknown function (DUF674) [more]
AT5G43240.33.3e-0524.02Protein of unknown function (DUF674) [more]
AT5G01150.12.2e-0424.90Protein of unknown function (DUF674) [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007750Protein of unknown function DUF674PFAMPF05056DUF674coord: 169..242
e-value: 6.4E-11
score: 41.8
coord: 8..56
e-value: 2.7E-15
score: 56.2
IPR007750Protein of unknown function DUF674PANTHERPTHR33103OS01G0153900 PROTEINcoord: 8..243
NoneNo IPR availablePANTHERPTHR33103:SF50OS01G0154200 PROTEINcoord: 8..243

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G008620.1Lsi04G008620.1mRNA