Lsi04G008550 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGTTGGAATTCCATAATGCTAAACAATTTTGGTTTGCAAATCCCGACAGTTGGATATTGGCACTTGGTAGATTTTCTCTGTAACTAGCTTTCTAAATTTAATTGAAGCCTTTACTTACACTATCCACTTATATGCTTTCAAACTTTCAGTCTATGAAGGATCTGGAAATCCAGAAATCGATTAGTTTTTTAGCATACCTCTATTGATCCCAAGCTATGACTCTCAATTCTTGAATGTGATCCAAGAGAATGAAAGACCCACAGACCTCGGCATTAGGATTTTTGTAGATGCAGACAACGAAAACAACCACCTTGAAGGGAGAGGAGTCAGCTTCCCGTCTGTTTATAGATGCAGCTTGGATTGCAAATTCAAGGATATGAAGGATGTTCTGCAAGCTGAAGCCGAAATGTATAAAGGACTTTTGAAGCGTCTAGAGGACCAGAGGTTGGGGGTATTCTAATTCCACTCCACTGGTCAAGCATACTTCAGAGGACAGCTAGCTAATATGACAAGTCCAATTCCTCCTATATTTTGTCTCTTGCTACGCCTCTTTTTGGGATTGTTATATATATTATAATTTTATGCGTGATGGGAGTTGAACGGATAAACCCAGAATCTTTATAAAACTGGGCTTGATGGTTCATTATCCTAGTGGTTGGCCCACCCAGCTTTTCATCAATTCATTTCTTGCTCCACCATTTGGAAAAAGAAAAATAGCTATCTTGATTTGTTGTGTAATTTTGAATTTGTTCTCTTTTCCGAAGGCAAGTAGAAGGAGGATTAGATGAGTTCTCTTGCATTCAAGAGAAAAAGAAAAAGAGAACTACCAAATCCAAACTTGATTTGTTCGTACCATTCTATCATCAATCACTGTTGATTGATTTTTTAAAAAATAATAATAATAATTATTGTAATCCATCTATTGGTTGTGTGCTGTCACTATTGGAGGATTCATATTCTACTTTTTGTTCTAATGCAGGGCATTCTTGTTTTTGCCTCTGTCATGGCAACTCTTGGATTACAGATAATATTGGAGTCAATTCGGACTCTCCTGTTAGGTGTAAGTAATTAGAGAACCATCTCTCTTTCTCATGAAATTCCCCCAAATTTATCGCTTTTAGCAGAAAAGTTGTCCCTAAATAGTGGACTGGCTAGATTTTTTTTCCACGACACTCCCCCGGACGCGCAGAAGATTTGACATCTATTTTCTTTATTTAATTTCCTACTCTTCTTTCAGGATTCTGTGTTCAACTTAACCAAGGAGCAAGAGCGATGGGTTGTGGGCATTATGCTTTCAGTTACTCTAGTGAAACTATTGTTGATGCTCTATTGCCGGGCTTTCACCAATGAGATAGTCAAAGCATATGCTCAAGATCATTTCTTTGATGTAGTCACCAATGCAATCGGCCTTGTTGCTGCTCTTCTCGCCAATTACATAGCTGGCTGGATCGACCCTCTCGGAGCTATTATTGTGAGTACATGTACAACCCTCTTTCTCCATATTGTGCATGATTTTCTGAATCTGAAACTCCCTTACTAGCATATCTATTTTAATGTGCATCTTGGTTATAAAGGTCTAGTACTGATGCATGTACTCACAACCCCCTGAGAATGAGTTTTTCGATGTTAGGATACTTCCTAACAAGATCACTCAAGAATAGAAAACTCAGGAACACTCAAATATGAAAATATATGGAAATATACTGTAATATTATAGAAAAAGTAACAAGATAACCTAATCTTTTGAGAGGACTAGTCTCTCCCAAATTCCCCAAAGGAAATTCCACAAAATTCTTCACATCTTTCTCCCAGCCCCGCTCCCTCTATTTATAACTAAAAGTCCTAACATACTTCCTAACTATTTACTAATATGTCTCTTACTAATAACCATACTAATATTCTACTAATAATCCTATTATATCTCTAACTAAGGCTCTTACACCTTAATATATACCCAGATTTACACAGATGGTTCTTATGCTTCATTTTAGTTTCTAATAGTGTCAACTTTGTAGAAGTTACCCATGTTTACTCTGTGAGCTCTGTGAATTGCTGCAGCTGGCTTTATACACTATACGTACATGGTCGATGACGGTATTGGAAAATGTGAACTCCCTTGTTGGAAGATCAGCTGCCCCCGAGTATCTACAAAAGCTCACCTACCTATGTTGGAACCATCATAAGGCCATCAGACACATTGACACAGTTCGAGCATATACATTTGGGTCACACTACTTTGTCGAGGTCGATATCGTCCTGCCTGGAGATATGCCACTGGAAGAGGCACACGACATTGGTGAATCGCTGCAAGAAAAGCTCGAGCTGCTACCGGAAATTGAGAGGGCCTTTGTTCATCTTGATTACGAGTACAAGCATAAACCAGAGCACGCACAGGCACACTCTTAGAACAAGGCATTTCTTCAACTCCAAACCCCGCATGTTCATTTATGTGGTAGTAAAACTGCAATAACATCGTTTTCGGTATTGTAAATTTGTGTCTGATTCTGCCTGAATTATGAGGAATTTCTTTGGTGATTTTAGAAGAAAATTCAGAGCAACAAACCAAAGAGAATCTTTGAGTGGCTCGTTAAATGTCGATAGAAGCTGGCAATTGTATAAAAACTGAAAATTCTTAAGCCACGACATCACATAATTTTCCAGAAATTTTGGTCGTCTTTTTTAATCAGCATCTCTTTTGAAGCTTAGGTTAAAAAAAGGACTTGTTGACTTTTGTATTTATTTTGTTTAAACCTTTATATTTTTAGTTAGGTTAAATTCTACCAAAATATCCTCCAGCTTTCAAAGTTCAGGACATAATTGGAACTTATTCTAAAATTTAGGAGTATTTTTATATAATTTAACTTAGTTTTATCATGTATTTTGGTTTGAGTTTTGCACACAAATTTGTAAGAAAAATTCTTGTCCAT ATGTTGTTGGAATTCCATAATGCTAAACAATTTTGGTTTGCAAATCCCGACAGTTGGATATTGGCACTTGGTAGATTTTCTCTCTATGACTCTCAATTCTTGAATGTGATCCAAGAGAATGAAAGACCCACAGACCTCGGCATTAGGATTTTTGTAGATGCAGACAACGAAAACAACCACCTTGAAGGGAGAGGAGTCAGCTTCCCGTCTGTTTATAGATGCAGCTTGGATTGCAAATTCAAGGATATGAAGGATGTTCTGCAAGCTGAAGCCGAAATGTATAAAGGACTTTTGAAGCGTCTAGAGGACCAGAGGTTGGGGGGCATTCTTGTTTTTGCCTCTGTCATGGCAACTCTTGGATTACAGATAATATTGGAGTCAATTCGGACTCTCCTGTTAGGTGATTCTGTGTTCAACTTAACCAAGGAGCAAGAGCGATGGGTTGTGGGCATTATGCTTTCAGTTACTCTAGTGAAACTATTGTTGATGCTCTATTGCCGGGCTTTCACCAATGAGATAGTCAAAGCATATGCTCAAGATCATTTCTTTGATGTAGTCACCAATGCAATCGGCCTTGTTGCTGCTCTTCTCGCCAATTACATAGCTGGCTGGATCGACCCTCTCGGAGCTATTATTCTGGCTTTATACACTATACGTACATGGTCGATGACGGTATTGGAAAATGTGAACTCCCTTGTTGGAAGATCAGCTGCCCCCGAGTATCTACAAAAGCTCACCTACCTATGTTGGAACCATCATAAGGCCATCAGACACATTGACACAGTTCGAGCATATACATTTGGGTCACACTACTTTGTCGAGGTCGATATCGTCCTGCCTGGAGATATGCCACTGGAAGAGGCACACGACATTGGTGAATCGCTGCAAGAAAAGCTCGAGCTGCTACCGGAAATTGAGAGGGCCTTTGTTCATCTTGATTACGAGTACAAGCATAAACCAGAGCACGCACAGGCACACTCTTAGAACAAGGCATTTCTTCAACTCCAAACCCCGCATGTTCATTTATGTGGTAGTAAAACTGCAATAACATCGTTTTCGGTATTGTAAATTTGTGTCTGATTCTGCCTGAATTATGAGGAATTTCTTTGGTGATTTTAGAAGAAAATTCAGAGCAACAAACCAAAGAGAATCTTTGAGTGGCTCGTTAAATGTCGATAGAAGCTGGCAATTGTATAAAAACTGAAAATTCTTAAGCCACGACATCACATAATTTTCCAGAAATTTTGGTCGTCTTTTTTAATCAGCATCTCTTTTGAAGCTTAGGTTAAAAAAAGGACTTGTTGACTTTTGTATTTATTTTGTTTAAACCTTTATATTTTTAGTTAGGTTAAATTCTACCAAAATATCCTCCAGCTTTCAAAGTTCAGGACATAATTGGAACTTATTCTAAAATTTAGGAGTATTTTTATATAATTTAACTTAGTTTTATCATGTATTTTGGTTTGAGTTTTGCACACAAATTTGTAAGAAAAATTCTTGTCCAT ATGTTGTTGGAATTCCATAATGCTAAACAATTTTGGTTTGCAAATCCCGACAGTTGGATATTGGCACTTGGTAGATTTTCTCTCTATGACTCTCAATTCTTGAATGTGATCCAAGAGAATGAAAGACCCACAGACCTCGGCATTAGGATTTTTGTAGATGCAGACAACGAAAACAACCACCTTGAAGGGAGAGGAGTCAGCTTCCCGTCTGTTTATAGATGCAGCTTGGATTGCAAATTCAAGGATATGAAGGATGTTCTGCAAGCTGAAGCCGAAATGTATAAAGGACTTTTGAAGCGTCTAGAGGACCAGAGGTTGGGGGGCATTCTTGTTTTTGCCTCTGTCATGGCAACTCTTGGATTACAGATAATATTGGAGTCAATTCGGACTCTCCTGTTAGGTGATTCTGTGTTCAACTTAACCAAGGAGCAAGAGCGATGGGTTGTGGGCATTATGCTTTCAGTTACTCTAGTGAAACTATTGTTGATGCTCTATTGCCGGGCTTTCACCAATGAGATAGTCAAAGCATATGCTCAAGATCATTTCTTTGATGTAGTCACCAATGCAATCGGCCTTGTTGCTGCTCTTCTCGCCAATTACATAGCTGGCTGGATCGACCCTCTCGGAGCTATTATTCTGGCTTTATACACTATACGTACATGGTCGATGACGGTATTGGAAAATGTGAACTCCCTTGTTGGAAGATCAGCTGCCCCCGAGTATCTACAAAAGCTCACCTACCTATGTTGGAACCATCATAAGGCCATCAGACACATTGACACAGTTCGAGCATATACATTTGGGTCACACTACTTTGTCGAGGTCGATATCGTCCTGCCTGGAGATATGCCACTGGAAGAGGCACACGACATTGGTGAATCGCTGCAAGAAAAGCTCGAGCTGCTACCGGAAATTGAGAGGGCCTTTGTTCATCTTGATTACGAGTACAAGCATAAACCAGAGCACGCACAGGCACACTCTTAG MLLEFHNAKQFWFANPDSWILALGRFSLYDSQFLNVIQENERPTDLGIRIFVDADNENNHLEGRGVSFPSVYRCSLDCKFKDMKDVLQAEAEMYKGLLKRLEDQRLGGILVFASVMATLGLQIILESIRTLLLGDSVFNLTKEQERWVVGIMLSVTLVKLLLMLYCRAFTNEIVKAYAQDHFFDVVTNAIGLVAALLANYIAGWIDPLGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKAIRHIDTVRAYTFGSHYFVEVDIVLPGDMPLEEAHDIGESLQEKLELLPEIERAFVHLDYEYKHKPEHAQAHS Homology
BLAST of Lsi04G008550 vs. ExPASy Swiss-Prot
Match: O80632 (Metal tolerance protein 11 OS=Arabidopsis thaliana OX=3702 GN=MTP11 PE=2 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 2.8e-105 Identity = 192/219 (87.67%), Postives = 204/219 (93.15%), Query Frame = 0
BLAST of Lsi04G008550 vs. ExPASy Swiss-Prot
Match: Q5NA18 (Metal tolerance protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=MTP5 PE=2 SV=1) HSP 1 Score: 373.2 bits (957), Expect = 2.9e-102 Identity = 185/219 (84.47%), Postives = 203/219 (92.69%), Query Frame = 0
BLAST of Lsi04G008550 vs. ExPASy Swiss-Prot
Match: Q0WU02 (Metal tolerance protein 10 OS=Arabidopsis thaliana OX=3702 GN=MTP10 PE=2 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 3.7e-81 Identity = 149/215 (69.30%), Postives = 182/215 (84.65%), Query Frame = 0
BLAST of Lsi04G008550 vs. ExPASy Swiss-Prot
Match: Q9SAJ7 (Metal tolerance protein 9 OS=Arabidopsis thaliana OX=3702 GN=MTP9 PE=3 SV=2) HSP 1 Score: 300.8 bits (769), Expect = 1.8e-80 Identity = 147/215 (68.37%), Postives = 182/215 (84.65%), Query Frame = 0
BLAST of Lsi04G008550 vs. ExPASy Swiss-Prot
Match: Q9LDU0 (Metal tolerance protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=MTP7 PE=2 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 3.1e-80 Identity = 148/216 (68.52%), Postives = 180/216 (83.33%), Query Frame = 0
BLAST of Lsi04G008550 vs. ExPASy TrEMBL
Match: A0A6J1GYD3 (metal tolerance protein 11-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111458601 PE=4 SV=1) HSP 1 Score: 427.6 bits (1098), Expect = 4.8e-116 Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0
BLAST of Lsi04G008550 vs. ExPASy TrEMBL
Match: A0A6J1GZB9 (metal tolerance protein 11-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458601 PE=4 SV=1) HSP 1 Score: 427.6 bits (1098), Expect = 4.8e-116 Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0
BLAST of Lsi04G008550 vs. ExPASy TrEMBL
Match: A0A6J1H123 (metal tolerance protein 11-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458601 PE=4 SV=1) HSP 1 Score: 427.6 bits (1098), Expect = 4.8e-116 Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0
BLAST of Lsi04G008550 vs. ExPASy TrEMBL
Match: A0A5A7V2B6 (Metal tolerance protein 11 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00190 PE=4 SV=1) HSP 1 Score: 426.4 bits (1095), Expect = 1.1e-115 Identity = 215/220 (97.73%), Postives = 219/220 (99.55%), Query Frame = 0
BLAST of Lsi04G008550 vs. ExPASy TrEMBL
Match: A0A1S3CFM0 (metal tolerance protein 11 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500184 PE=4 SV=1) HSP 1 Score: 426.4 bits (1095), Expect = 1.1e-115 Identity = 215/220 (97.73%), Postives = 219/220 (99.55%), Query Frame = 0
BLAST of Lsi04G008550 vs. NCBI nr
Match: XP_022957124.1 (metal tolerance protein 11-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 427.6 bits (1098), Expect = 1.0e-115 Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0
BLAST of Lsi04G008550 vs. NCBI nr
Match: XP_022957123.1 (metal tolerance protein 11-like isoform X1 [Cucurbita moschata] >XP_023541130.1 metal tolerance protein 11-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 427.6 bits (1098), Expect = 1.0e-115 Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0
BLAST of Lsi04G008550 vs. NCBI nr
Match: XP_022957125.1 (metal tolerance protein 11-like isoform X3 [Cucurbita moschata] >XP_022957126.1 metal tolerance protein 11-like isoform X3 [Cucurbita moschata] >XP_022957127.1 metal tolerance protein 11-like isoform X3 [Cucurbita moschata]) HSP 1 Score: 427.6 bits (1098), Expect = 1.0e-115 Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0
BLAST of Lsi04G008550 vs. NCBI nr
Match: XP_008461623.1 (PREDICTED: metal tolerance protein 11 isoform X2 [Cucumis melo]) HSP 1 Score: 426.4 bits (1095), Expect = 2.2e-115 Identity = 215/220 (97.73%), Postives = 219/220 (99.55%), Query Frame = 0
BLAST of Lsi04G008550 vs. NCBI nr
Match: XP_008461622.1 (PREDICTED: metal tolerance protein 11 isoform X1 [Cucumis melo] >KAA0062223.1 metal tolerance protein 11 isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 426.4 bits (1095), Expect = 2.2e-115 Identity = 215/220 (97.73%), Postives = 219/220 (99.55%), Query Frame = 0
BLAST of Lsi04G008550 vs. TAIR 10
Match: AT2G39450.1 (Cation efflux family protein ) HSP 1 Score: 383.3 bits (983), Expect = 2.0e-106 Identity = 192/219 (87.67%), Postives = 204/219 (93.15%), Query Frame = 0
BLAST of Lsi04G008550 vs. TAIR 10
Match: AT1G16310.1 (Cation efflux family protein ) HSP 1 Score: 303.1 bits (775), Expect = 2.6e-82 Identity = 149/215 (69.30%), Postives = 182/215 (84.65%), Query Frame = 0
BLAST of Lsi04G008550 vs. TAIR 10
Match: AT1G79520.1 (Cation efflux family protein ) HSP 1 Score: 300.8 bits (769), Expect = 1.3e-81 Identity = 147/215 (68.37%), Postives = 182/215 (84.65%), Query Frame = 0
BLAST of Lsi04G008550 vs. TAIR 10
Match: AT1G79520.2 (Cation efflux family protein ) HSP 1 Score: 300.8 bits (769), Expect = 1.3e-81 Identity = 147/215 (68.37%), Postives = 182/215 (84.65%), Query Frame = 0
BLAST of Lsi04G008550 vs. TAIR 10
Match: AT3G58060.1 (Cation efflux family protein ) HSP 1 Score: 250.8 bits (639), Expect = 1.6e-66 Identity = 134/232 (57.76%), Postives = 170/232 (73.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|