Lsi04G007840 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G007840
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGEM-like protein 4
Locationchr04: 7372972 .. 7373803 (-)
RNA-Seq ExpressionLsi04G007840
SyntenyLsi04G007840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCTATACATTCCTAAATCTCTCAATTTTCTATCTTTTTCTTCAATTTGAAAAAAAAAAGATGAAGACTACAATTCAATTACATATGTTGGGAATTCAGATGTCATTGGCTCTTGCAAGAGCTAGATATTTGGGTGCTCCCTCCAGGCATCTCCACATATCTTCTTCAGATGATGGATCTCAATCAATTAAGAAATGTAAGAGATATATAAGAAGAAGAAGAAGAAAGAAAGTTTTTTTTTTTTTGGATGAATATATAAATTGTTTTGCTAACTAATTTGGTTTCTGAGTTGTTGCAGATAATGGAAAAGATTGGATCTTGAATAGACTCAACAAAAATGGAAGAAAAACAAACAATGTCATTCACGCACTCCGAGAACATGGTAAGTCTTCTAAGAGATCTAAGAGCCTTTAGTTCATCCAACAACTCTAGAATAAAAAAAAACAATTGATCTATTATGATATATTTTTGATTATATATAATGTATGTAATTAAATTAGGGTAATAATATTTATAATGAATGAATTTTGCAGGTTGTGATTCCAAAGGAGAAGGTGAAGAGTGTAAATGAAAGTGAGAATAATGTTGAGAAAGGTTCAGAAAAGTACATAGAAATAGGGACAATGGACGACTTTGAATTTTGGTTTATGGGTTTTCTAAATTATCAATCAACTTTCAACTCTCTTCGAGGAGTAGACAGAAGACTGGGCTACAGATGATGCCAAATTATATTATATTTCAATTTTAATGTTGAAACATTGATTATTGTGTATAGATTAATTCAATAATCTAATGAGAAAATTCAATTTGAGATTTTCCAAGTTGAGATCA

mRNA sequence

CCTCTATACATTCCTAAATCTCTCAATTTTCTATCTTTTTCTTCAATTTGAAAAAAAAAAGATGAAGACTACAATTCAATTACATATGTTGGGAATTCAGATGTCATTGGCTCTTGCAAGAGCTAGATATTTGGGTGCTCCCTCCAGGCATCTCCACATATCTTCTTCAGATGATGGATCTCAATCAATTAAGAAATATAATGGAAAAGATTGGATCTTGAATAGACTCAACAAAAATGGAAGAAAAACAAACAATGTCATTCACGCACTCCGAGAACATGGTTGTGATTCCAAAGGAGAAGGTGAAGAGTGTAAATGAAAGTGAGAATAATGTTGAGAAAGGTTCAGAAAAGTACATAGAAATAGGGACAATGGACGACTTTGAATTTTGGTTTATGGGTTTTCTAAATTATCAATCAACTTTCAACTCTCTTCGAGGAGTAGACAGAAGACTGGGCTACAGATGATGCCAAATTATATTATATTTCAATTTTAATGTTGAAACATTGATTATTGTGTATAGATTAATTCAATAATCTAATGAGAAAATTCAATTTGAGATTTTCCAAGTTGAGATCA

Coding sequence (CDS)

ATGAAGACTACAATTCAATTACATATGTTGGGAATTCAGATGTCATTGGCTCTTGCAAGAGCTAGATATTTGGGTGCTCCCTCCAGGCATCTCCACATATCTTCTTCAGATGATGGATCTCAATCAATTAAGAAATATAATGGAAAAGATTGGATCTTGAATAGACTCAACAAAAATGGAAGAAAAACAAACAATGTCATTCACGCACTCCGAGAACATGGTTGTGATTCCAAAGGAGAAGGTGAAGAGTGTAAATGA

Protein sequence

MKTTIQLHMLGIQMSLALARARYLGAPSRHLHISSSDDGSQSIKKYNGKDWILNRLNKNGRKTNNVIHALREHGCDSKGEGEECK
Homology
BLAST of Lsi04G007840 vs. ExPASy TrEMBL
Match: A0A6J1GW39 (putative GEM-like protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111458124 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.5e-24
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MKTTIQLHMLGIQM-SLALARARYLGAPSRHLHISSSDDGSQSIKKYNGKDWILNRLNKN 60
          MKTTIQ  +LG QM SLALARAR+L  PS+HLHISSSDDGSQSIKKYNGKDWILNRL+KN
Sbjct: 1  MKTTIQEQVLGAQMKSLALARARFLADPSKHLHISSSDDGSQSIKKYNGKDWILNRLHKN 60

Query: 61 GRKTNNVIHALREH 74
          GRKT+N+IHALR+H
Sbjct: 61 GRKTDNIIHALRQH 74

BLAST of Lsi04G007840 vs. ExPASy TrEMBL
Match: A0A6J1KB00 (putative GEM-like protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111493833 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-23
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 1  MKTTIQLHMLGIQM-SLALARARYLGAPSRHLHISSSDDGSQSIKKYNGKDWILNRLNKN 60
          MKTTIQ  +LG QM SLALARAR+L  PS+HLHISSSDDGSQSIKKYNGKDW LNRL+KN
Sbjct: 1  MKTTIQEQVLGAQMKSLALARARFLADPSKHLHISSSDDGSQSIKKYNGKDWSLNRLHKN 60

Query: 61 GRKTNNVIHALREH 74
          GRKT+N+IHALR+H
Sbjct: 61 GRKTDNIIHALRQH 74

BLAST of Lsi04G007840 vs. ExPASy TrEMBL
Match: A0A5A7SUE9 (GEM-like protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00710 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.1e-23
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 0

Query: 1  MKTTIQLHMLGIQMSLALARARYLGAPSRHLHISSSDDGSQ-SIKKYNGKDWILNRLNKN 60
          MKTTIQ HMLG QMSLAL+RARYLG P + LH+SSSDDGSQ SIKKYNGKD ILNRLN N
Sbjct: 1  MKTTIQEHMLGFQMSLALSRARYLGHPLKRLHLSSSDDGSQSSIKKYNGKDCILNRLNTN 60

Query: 61 GRKTNNVIHALREH 74
          G++T+N+IHALREH
Sbjct: 61 GKRTDNIIHALREH 74

BLAST of Lsi04G007840 vs. ExPASy TrEMBL
Match: A0A1S3BEG1 (GEM-like protein 4 OS=Cucumis melo OX=3656 GN=LOC103488778 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.1e-23
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 0

Query: 1  MKTTIQLHMLGIQMSLALARARYLGAPSRHLHISSSDDGSQ-SIKKYNGKDWILNRLNKN 60
          MKTTIQ HMLG QMSLAL+RARYLG P + LH+SSSDDGSQ SIKKYNGKD ILNRLN N
Sbjct: 1  MKTTIQEHMLGFQMSLALSRARYLGHPLKRLHLSSSDDGSQSSIKKYNGKDCILNRLNTN 60

Query: 61 GRKTNNVIHALREH 74
          G++T+N+IHALREH
Sbjct: 61 GKRTDNIIHALREH 74

BLAST of Lsi04G007840 vs. ExPASy TrEMBL
Match: A0A6J1KB26 (putative GEM-like protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111493848 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.8e-22
Identity = 53/73 (72.60%), Postives = 65/73 (89.04%), Query Frame = 0

Query: 1  MKTTIQLHMLGIQMSLALARARYLGAPSRHLHISSSDDGSQSIKKYNGKDWILNRLNKNG 60
          MK+ IQ H+LG+Q+SLALARAR+L  PS+HLH+SS DDGSQSI+KYNGKDWILNR++KNG
Sbjct: 1  MKSAIQQHVLGMQLSLALARARFLAHPSKHLHMSSLDDGSQSIQKYNGKDWILNRVHKNG 60

Query: 61 RKTNNVIHALREH 74
          RK +N+I  LREH
Sbjct: 61 RKPDNIIRELREH 73

BLAST of Lsi04G007840 vs. NCBI nr
Match: XP_022956362.1 (putative GEM-like protein 8 [Cucurbita moschata] >KAG6601068.1 GEM-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 5.2e-24
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MKTTIQLHMLGIQM-SLALARARYLGAPSRHLHISSSDDGSQSIKKYNGKDWILNRLNKN 60
          MKTTIQ  +LG QM SLALARAR+L  PS+HLHISSSDDGSQSIKKYNGKDWILNRL+KN
Sbjct: 1  MKTTIQEQVLGAQMKSLALARARFLADPSKHLHISSSDDGSQSIKKYNGKDWILNRLHKN 60

Query: 61 GRKTNNVIHALREH 74
          GRKT+N+IHALR+H
Sbjct: 61 GRKTDNIIHALRQH 74

BLAST of Lsi04G007840 vs. NCBI nr
Match: XP_023513103.1 (putative GEM-like protein 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 5.2e-24
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MKTTIQLHMLGIQM-SLALARARYLGAPSRHLHISSSDDGSQSIKKYNGKDWILNRLNKN 60
          MKTTIQ  +LG QM SLALARAR+L  PS+HLHISSSDDGSQSIKKYNGKDWILNRL+KN
Sbjct: 1  MKTTIQEQVLGAQMKSLALARARFLADPSKHLHISSSDDGSQSIKKYNGKDWILNRLHKN 60

Query: 61 GRKTNNVIHALREH 74
          GRKT+N+IHALR+H
Sbjct: 61 GRKTDNIIHALRQH 74

BLAST of Lsi04G007840 vs. NCBI nr
Match: XP_038892955.1 (GEM-like protein 7 [Benincasa hispida])

HSP 1 Score: 119.0 bits (297), Expect = 2.0e-23
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0

Query: 1  MKTTIQLH-MLGIQM-SLALARARYLGAPSRHLHISSSDDGSQSIKKYNGKDWILNRLNK 60
          MKTTIQ   +LGIQM SL LARAR LG PS+HLHISSSDDGSQSIKKYNGKDW+LNRLNK
Sbjct: 1  MKTTIQEQVILGIQMKSLGLARARLLGDPSKHLHISSSDDGSQSIKKYNGKDWVLNRLNK 60

Query: 61 NGRKTNNVIHALREH 74
          NG+KT+N+IHALREH
Sbjct: 61 NGKKTDNIIHALREH 75

BLAST of Lsi04G007840 vs. NCBI nr
Match: XP_022999487.1 (putative GEM-like protein 8 [Cucurbita maxima])

HSP 1 Score: 118.6 bits (296), Expect = 2.6e-23
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 1  MKTTIQLHMLGIQM-SLALARARYLGAPSRHLHISSSDDGSQSIKKYNGKDWILNRLNKN 60
          MKTTIQ  +LG QM SLALARAR+L  PS+HLHISSSDDGSQSIKKYNGKDW LNRL+KN
Sbjct: 1  MKTTIQEQVLGAQMKSLALARARFLADPSKHLHISSSDDGSQSIKKYNGKDWSLNRLHKN 60

Query: 61 GRKTNNVIHALREH 74
          GRKT+N+IHALR+H
Sbjct: 61 GRKTDNIIHALRQH 74

BLAST of Lsi04G007840 vs. NCBI nr
Match: KAA0034083.1 (GEM-like protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-22
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 0

Query: 1  MKTTIQLHMLGIQMSLALARARYLGAPSRHLHISSSDDGSQ-SIKKYNGKDWILNRLNKN 60
          MKTTIQ HMLG QMSLAL+RARYLG P + LH+SSSDDGSQ SIKKYNGKD ILNRLN N
Sbjct: 1  MKTTIQEHMLGFQMSLALSRARYLGHPLKRLHLSSSDDGSQSSIKKYNGKDCILNRLNTN 60

Query: 61 GRKTNNVIHALREH 74
          G++T+N+IHALREH
Sbjct: 61 GKRTDNIIHALREH 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GW392.5e-2482.43putative GEM-like protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111458124 PE=3 S... [more]
A0A6J1KB001.2e-2381.08putative GEM-like protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111493833 PE=3 SV=... [more]
A0A5A7SUE98.1e-2379.73GEM-like protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00... [more]
A0A1S3BEG18.1e-2379.73GEM-like protein 4 OS=Cucumis melo OX=3656 GN=LOC103488778 PE=3 SV=1[more]
A0A6J1KB266.8e-2272.60putative GEM-like protein 8 OS=Cucurbita maxima OX=3661 GN=LOC111493848 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
XP_022956362.15.2e-2482.43putative GEM-like protein 8 [Cucurbita moschata] >KAG6601068.1 GEM-like protein ... [more]
XP_023513103.15.2e-2482.43putative GEM-like protein 8 [Cucurbita pepo subsp. pepo][more]
XP_038892955.12.0e-2382.67GEM-like protein 7 [Benincasa hispida][more]
XP_022999487.12.6e-2381.08putative GEM-like protein 8 [Cucurbita maxima][more]
KAA0034083.11.7e-2279.73GEM-like protein 4 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G007840.1Lsi04G007840.1mRNA