Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGCTAGTCCTTTACAACCATCAAATACCTCCAGACAGAAATCTCAATCATTGCAAAAAGCTAATGCTACAGTGCCTTCTCCACTGTCAGTATTCCAATCATCACATGAAATGCTGAAGAAAAGTAATAATGAAGCTTTCAGTGTGATTTCAGAAAACAAATTTACTGAAAAGTCGAAAGCTTCTGATTTCTTCTCAGTCACTAGGAGCGACTCTGTCCAGAAATCTAATATAAACCTTGATCAGAAATCATTCATCTTTACCATATCATCTAAGCAGACGCCCACACTGAAAGATTCTATTGATACTTCTAATTCGGACAATCAGAAGACTGCTAACGCAAAGGAGAGGCATACAACTACAAGTCCACTTTTTGGATCTGCAGATAAACCTGAATCTGCGTCCGTTGGTACGATGTCTTCTCTGGTTCCTACTGTTGATGAAGCAAGAAAGATTGAAGAAAAAAGATCGCTGACAACAATTTCACCATCAGTTCCAGCACCAGCACTAGCACGGTTAAATACTACTTCAAGTTCATCGACTTTATTTTCAGGATTTGCTGTAAGCAAACCTCTTCCAAGTTCTGCTGCTGTTATAGATCTCAATCAACCTCTGTCAACATCAACCCAATTAAACTTCTCCTCTCCAGTTGTTTCTATTTCTGATTCCCTATTTCAGGCACCTAAGATAGTATCAACATCACCTACTCTATCTTCCTTGAATCCTTCATTGGAGCCCTTGAAAAAAGAGCTACCTATTTTGAAATCAGATGACGATACTGAAAAGCAAACACCAGCTTCAAAGCCTGAGTCTTATGAACTGAAATTTCAACCTTCTGTAACACCTGCTGATAAAAATCATGTAGAGCCAACTTCTAAAACCCAGACAGTTGCCAAAGATGTTGGAGGACAGGTTCCAAATGTAATAGGGAATGCTCAACCACAACAGCCATCTGTTGCTTTTGCTTCACCAAACTTAACTTCTAAGATTTTTGCGAATGGTAGAAATGAAGCTTCAAACACGGCGGTTACTCAGGATGATGATATGGACGAGGAGGCTCCAGAGACGAATAACAATGTCGAGTTTAATTTGAGCAGCTTAGGAGGATTTGGAAATAGCTCCACCCCTATGTCAGGTGCTCCTAAACCAAATCCATTTGGTGGTCCATTTGGTAATGTGAATGCAACATCGATGACCTCTTCCTTTACTATGGCATCTCCTCCAAGTGGAGAGCTGTTTCGGCCTGCATCATTTAGCTTCCAATCTCCATTGGCTTCACAAGCAGCGTCACAACCCACAAATTCAGTTGCATTCTCTGGTGGGTTTGGCTCTGCAATGGCTACTCAAGCCCCATCGCAAGGTGGGTTCGGTCAGCCTGCTCAGATTGGAGTAGGGCAGCAAGCACTTGGGAATGTTCTTGGTTCATTTGGACAATCAAGACAGCTTGGTCCTAGTCTCCCTGGAACTGGTACAGGATCCCCTGGCGGTTTTAGTGGTGGCTTTACCAGTCTAAAACCGGTTGGAGTTGGTGGGTTTGCCGGTGCTGGTTCAAGTGTTGGTAGTGGTGGGTTCGCTGGTGTTGGTTCAGGGGGTGGTGGCGGTTTTGGTGGTGTTGGTTCAGGTGGCGGTGGTTTCGCTGGCACAGTCTCAACTGGTGGAGGATTTGCTGGTGCTTCCTCTACAACGGGAGGTTTCGCAGCTGCTGCAGGCGGGGGTTTTGTAGGTGCTGCAGGTGGAGGCTTTGCAGGTGCTGCAGGTGGAGGCTTTGCAGGTGCTGCAGGTGGATTTGGGGCGTTCGGCAGCCAGCAAGGAAGCGGCGGTTTCTCTGCTTTTGGTGCTGGTGGAGCTGGAGGAACTGGAAAACCTCCTGAGCTTTTCACCCAGATTAGAAAGTAG
mRNA sequence
ATGTGGGCTAGTCCTTTACAACCATCAAATACCTCCAGACAGAAATCTCAATCATTGCAAAAAGCTAATGCTACAGTGCCTTCTCCACTGTCAGTATTCCAATCATCACATGAAATGCTGAAGAAAAGTAATAATGAAGCTTTCAGTGTGATTTCAGAAAACAAATTTACTGAAAAGTCGAAAGCTTCTGATTTCTTCTCAGTCACTAGGAGCGACTCTGTCCAGAAATCTAATATAAACCTTGATCAGAAATCATTCATCTTTACCATATCATCTAAGCAGACGCCCACACTGAAAGATTCTATTGATACTTCTAATTCGGACAATCAGAAGACTGCTAACGCAAAGGAGAGGCATACAACTACAAGTCCACTTTTTGGATCTGCAGATAAACCTGAATCTGCGTCCGTTGGTACGATGTCTTCTCTGGTTCCTACTGTTGATGAAGCAAGAAAGATTGAAGAAAAAAGATCGCTGACAACAATTTCACCATCAGTTCCAGCACCAGCACTAGCACGGTTAAATACTACTTCAAGTTCATCGACTTTATTTTCAGGATTTGCTGTAAGCAAACCTCTTCCAAGTTCTGCTGCTGTTATAGATCTCAATCAACCTCTGTCAACATCAACCCAATTAAACTTCTCCTCTCCAGTTGTTTCTATTTCTGATTCCCTATTTCAGGCACCTAAGATAGTATCAACATCACCTACTCTATCTTCCTTGAATCCTTCATTGGAGCCCTTGAAAAAAGAGCTACCTATTTTGAAATCAGATGACGATACTGAAAAGCAAACACCAGCTTCAAAGCCTGAGTCTTATGAACTGAAATTTCAACCTTCTGTAACACCTGCTGATAAAAATCATGTAGAGCCAACTTCTAAAACCCAGACAGTTGCCAAAGATGTTGGAGGACAGGTTCCAAATGTAATAGGGAATGCTCAACCACAACAGCCATCTGTTGCTTTTGCTTCACCAAACTTAACTTCTAAGATTTTTGCGAATGGTAGAAATGAAGCTTCAAACACGGCGGTTACTCAGGATGATGATATGGACGAGGAGGCTCCAGAGACGAATAACAATGTCGAGTTTAATTTGAGCAGCTTAGGAGGATTTGGAAATAGCTCCACCCCTATGTCAGGTGCTCCTAAACCAAATCCATTTGGTGGTCCATTTGGTAATGTGAATGCAACATCGATGACCTCTTCCTTTACTATGGCATCTCCTCCAAGTGGAGAGCTGTTTCGGCCTGCATCATTTAGCTTCCAATCTCCATTGGCTTCACAAGCAGCGTCACAACCCACAAATTCAGTTGCATTCTCTGGTGGGTTTGGCTCTGCAATGGCTACTCAAGCCCCATCGCAAGGTGGGTTCGGTCAGCCTGCTCAGATTGGAGTAGGGCAGCAAGCACTTGGGAATGTTCTTGGTTCATTTGGACAATCAAGACAGCTTGGTCCTAGTCTCCCTGGAACTGGTACAGGATCCCCTGGCGGTTTTAGTGGTGGCTTTACCAGTCTAAAACCGGTTGGAGTTGGTGGGTTTGCCGGTGCTGGTTCAAGTGTTGGTAGTGGTGGGTTCGCTGGTGTTGGTTCAGGGGGTGGTGGCGGTTTTGGTGGTGTTGGTTCAGGTGGCGGTGGTTTCGCTGGCACAGTCTCAACTGGTGGAGGATTTGCTGGTGCTTCCTCTACAACGGGAGGTTTCGCAGCTGCTGCAGGCGGGGGTTTTGTAGGTGCTGCAGGTGGAGGCTTTGCAGGTGCTGCAGGTGGAGGCTTTGCAGGTGCTGCAGGTGGATTTGGGGCGTTCGGCAGCCAGCAAGGAAGCGGCGGTTTCTCTGCTTTTGGTGCTGGTGGAGCTGGAGGAACTGGAAAACCTCCTGAGCTTTTCACCCAGATTAGAAAGTAG
Coding sequence (CDS)
ATGTGGGCTAGTCCTTTACAACCATCAAATACCTCCAGACAGAAATCTCAATCATTGCAAAAAGCTAATGCTACAGTGCCTTCTCCACTGTCAGTATTCCAATCATCACATGAAATGCTGAAGAAAAGTAATAATGAAGCTTTCAGTGTGATTTCAGAAAACAAATTTACTGAAAAGTCGAAAGCTTCTGATTTCTTCTCAGTCACTAGGAGCGACTCTGTCCAGAAATCTAATATAAACCTTGATCAGAAATCATTCATCTTTACCATATCATCTAAGCAGACGCCCACACTGAAAGATTCTATTGATACTTCTAATTCGGACAATCAGAAGACTGCTAACGCAAAGGAGAGGCATACAACTACAAGTCCACTTTTTGGATCTGCAGATAAACCTGAATCTGCGTCCGTTGGTACGATGTCTTCTCTGGTTCCTACTGTTGATGAAGCAAGAAAGATTGAAGAAAAAAGATCGCTGACAACAATTTCACCATCAGTTCCAGCACCAGCACTAGCACGGTTAAATACTACTTCAAGTTCATCGACTTTATTTTCAGGATTTGCTGTAAGCAAACCTCTTCCAAGTTCTGCTGCTGTTATAGATCTCAATCAACCTCTGTCAACATCAACCCAATTAAACTTCTCCTCTCCAGTTGTTTCTATTTCTGATTCCCTATTTCAGGCACCTAAGATAGTATCAACATCACCTACTCTATCTTCCTTGAATCCTTCATTGGAGCCCTTGAAAAAAGAGCTACCTATTTTGAAATCAGATGACGATACTGAAAAGCAAACACCAGCTTCAAAGCCTGAGTCTTATGAACTGAAATTTCAACCTTCTGTAACACCTGCTGATAAAAATCATGTAGAGCCAACTTCTAAAACCCAGACAGTTGCCAAAGATGTTGGAGGACAGGTTCCAAATGTAATAGGGAATGCTCAACCACAACAGCCATCTGTTGCTTTTGCTTCACCAAACTTAACTTCTAAGATTTTTGCGAATGGTAGAAATGAAGCTTCAAACACGGCGGTTACTCAGGATGATGATATGGACGAGGAGGCTCCAGAGACGAATAACAATGTCGAGTTTAATTTGAGCAGCTTAGGAGGATTTGGAAATAGCTCCACCCCTATGTCAGGTGCTCCTAAACCAAATCCATTTGGTGGTCCATTTGGTAATGTGAATGCAACATCGATGACCTCTTCCTTTACTATGGCATCTCCTCCAAGTGGAGAGCTGTTTCGGCCTGCATCATTTAGCTTCCAATCTCCATTGGCTTCACAAGCAGCGTCACAACCCACAAATTCAGTTGCATTCTCTGGTGGGTTTGGCTCTGCAATGGCTACTCAAGCCCCATCGCAAGGTGGGTTCGGTCAGCCTGCTCAGATTGGAGTAGGGCAGCAAGCACTTGGGAATGTTCTTGGTTCATTTGGACAATCAAGACAGCTTGGTCCTAGTCTCCCTGGAACTGGTACAGGATCCCCTGGCGGTTTTAGTGGTGGCTTTACCAGTCTAAAACCGGTTGGAGTTGGTGGGTTTGCCGGTGCTGGTTCAAGTGTTGGTAGTGGTGGGTTCGCTGGTGTTGGTTCAGGGGGTGGTGGCGGTTTTGGTGGTGTTGGTTCAGGTGGCGGTGGTTTCGCTGGCACAGTCTCAACTGGTGGAGGATTTGCTGGTGCTTCCTCTACAACGGGAGGTTTCGCAGCTGCTGCAGGCGGGGGTTTTGTAGGTGCTGCAGGTGGAGGCTTTGCAGGTGCTGCAGGTGGAGGCTTTGCAGGTGCTGCAGGTGGATTTGGGGCGTTCGGCAGCCAGCAAGGAAGCGGCGGTTTCTCTGCTTTTGGTGCTGGTGGAGCTGGAGGAACTGGAAAACCTCCTGAGCTTTTCACCCAGATTAGAAAGTAG
Protein sequence
MWASPLQPSNTSRQKSQSLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFTEKSKASDFFSVTRSDSVQKSNINLDQKSFIFTISSKQTPTLKDSIDTSNSDNQKTANAKERHTTTSPLFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLNTTSSSSTLFSGFAVSKPLPSSAAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIVSTSPTLSSLNPSLEPLKKELPILKSDDDTEKQTPASKPESYELKFQPSVTPADKNHVEPTSKTQTVAKDVGGQVPNVIGNAQPQQPSVAFASPNLTSKIFANGRNEASNTAVTQDDDMDEEAPETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMTSSFTMASPPSGELFRPASFSFQSPLASQAASQPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQALGNVLGSFGQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGSSVGSGGFAGVGSGGGGGFGGVGSGGGGFAGTVSTGGGFAGASSTTGGFAAAAGGGFVGAAGGGFAGAAGGGFAGAAGGFGAFGSQQGSGGFSAFGAGGAGGTGKPPELFTQIRK
Homology
BLAST of Lsi04G007530 vs. ExPASy Swiss-Prot
Match:
F4I1T7 (Nuclear pore complex protein NUP214 OS=Arabidopsis thaliana OX=3702 GN=NUP214 PE=1 SV=1)
HSP 1 Score: 188.0 bits (476), Expect = 3.4e-46
Identity = 249/671 (37.11%), Postives = 333/671 (49.63%), Query Frame = 0
Query: 18 SLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFTEKSKASDFFSVTRSDSV--- 77
S+Q+ + T S S F+SS K FS +S + F S S+
Sbjct: 1185 SVQRLSTT--SSGSDFESS-----KGFGAQFSTMSSGAPASSFSSKSLFGFNSSSSIPGD 1244
Query: 78 ---------QKSNINLDQKSFIFT-----ISSKQTPTLKDSIDTSNSDNQKTANAKERHT 137
S LD S +FT +SS + SI S++ +T + T
Sbjct: 1245 KFTFPAVTAPLSGTPLDSTSTLFTASSAPVSSSSQDPVPASIPISSAPVPQTFSVTSTST 1304
Query: 138 TTSP----LFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLNT 197
++ FG + + P+ +L +SPS P +++
Sbjct: 1305 VSATGFNVPFGKPLTSVKVDLNQAAPSTPSPSPGPTAGFTFNLPALSPSSP----EMVSS 1364
Query: 198 TSSSSTLFSGFA----VSKPLPSSAAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIV 257
++ S+LF A VS S+ + + + L +ST L+ S+P ++ D+ FQ+P++
Sbjct: 1365 STGQSSLFPPSAPTSQVSSDQASATSSLTDSSRLFSSTSLS-STPPITPPDA-FQSPQVS 1424
Query: 258 STSPTLSSLNPSLEPLKKEL---PILKSDDDTEKQTPASKPESYELKFQ-------PSVT 317
+ S + P EP K E IL + + A+K ++ L + +VT
Sbjct: 1425 TPSSAVPITEPVSEPKKPEAQSSSILSTQSTVDSVANATKTQNEPLPVKSEISNPGTTVT 1484
Query: 318 PADKNHVEP--TSKTQTVAKDVGGQVPNVIGNAQPQQPSVAFASPNLTSKIFANGRNEAS 377
P + +S TQ+ + + G++QPQQ S A +S A+ E
Sbjct: 1485 PVSSSGFLSGFSSGTQSSLASMAAPSFSWPGSSQPQQLSSTPAPFPASSPTSASPFGEKK 1544
Query: 378 NTAVTQDDDMDEEAPETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMT 437
+ TQ+D+MDEEAPE + E ++ S GGFG STP GAPK NPFGGPFG NAT+ T
Sbjct: 1545 DIVDTQEDEMDEEAPEASQTTELSMGSFGGFGLGSTPNPGAPKTNPFGGPFG--NATTTT 1604
Query: 438 SSFTMASPPSGELFRPASFSFQSPLASQAASQPTNSVAFSGGFGSAMAT--QAPSQGGFG 497
S+ + PSGELF+PASF+FQ+P SQ A GFGS T Q P+Q GFG
Sbjct: 1605 SNPFNMTVPSGELFKPASFNFQNPQPSQPA-----------GFGSFSVTPSQTPAQSGFG 1664
Query: 498 QPAQIGVGQQALGNVLGSFGQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGS 557
QP+QIG GQQALG+VLGSFGQSRQ+G LPG GSP GF G +G +
Sbjct: 1665 QPSQIGGGQQALGSVLGSFGQSRQIGAGLPGATFGSPTGFGGSNPG---------SGLPN 1724
Query: 558 SVGSGGFAGVGSGGGGGFGGVGSGGGGFAGTVST-GGGFAGASSTTGGFAAAA----GGG 617
+ SGGFA GS GGF + S G GFAG ST GGFA +S +GGFA AA GGG
Sbjct: 1725 APASGGFAAAGSSATGGFAAMASAGRGFAGASSTPTGGFAALASGSGGFAGAAPGGGGGG 1784
Query: 618 F--VGAAGGGFAGAA----GGGFAGAA--GGFGAFG----SQQGSGGFSAFGAGGAGGTG 633
F +G+ GGF G A GGFAGAA GGFG FG Q G GGFSAFG G +G TG
Sbjct: 1785 FGGLGSGTGGFGGFAPQGSSGGFAGAAGGGGFGGFGGQAQGQAGGGGFSAFG-GNSGATG 1819
BLAST of Lsi04G007530 vs. ExPASy TrEMBL
Match:
A0A5D3CWG0 (Nuclear pore complex protein NUP214 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003090 PE=4 SV=1)
HSP 1 Score: 827.8 bits (2137), Expect = 3.1e-236
Identity = 511/647 (78.98%), Postives = 538/647 (83.15%), Query Frame = 0
Query: 1 MWASPLQPSNTSRQKSQSLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFT--- 60
MWAS LQPSNTSRQKS LQK NAT PSP VFQSSH+MLKK+NN A S SENKFT
Sbjct: 786 MWASVLQPSNTSRQKSLPLQKTNATAPSPPPVFQSSHDMLKKNNNAAHSATSENKFTDMA 845
Query: 61 --EKSKASDFFSVTRSDSVQKSNINLDQKSFIFTISSKQTPTLKDSIDTSNSDNQKTANA 120
EKSKASDFFS TRSDSVQKS IN+DQKS IFTISSKQTP +DSI TSN DNQKTAN
Sbjct: 846 CPEKSKASDFFSATRSDSVQKSKINVDQKSSIFTISSKQTPPPEDSIGTSNVDNQKTANV 905
Query: 121 KERHTTTSPLFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLN 180
KERHTTTS LFGSA+KPES VGTM SLVPTVD ARK EEK+S+TTIS SV AP A LN
Sbjct: 906 KERHTTTSQLFGSANKPESPFVGTMPSLVPTVDGARKTEEKKSVTTISQSVSAP--APLN 965
Query: 181 TTSSSSTLFSGFAVSKPLPSS---AAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIV 240
T+SS+STLFSGFAVSK LPSS AAV+DLNQP STSTQLNF SPVVS S+SLFQAPK V
Sbjct: 966 TSSSASTLFSGFAVSKSLPSSAAVAAVVDLNQPQSTSTQLNF-SPVVSGSNSLFQAPK-V 1025
Query: 241 STSPTLSSLNPSLEPLKKELPILKSDDDTEKQTPASKPESYELKFQPSVTPADKNHVEPT 300
TSPTLSSLNP++E K EL +LKS+DD EKQT +SKP S+ELKFQPS+TPADKNHVEPT
Sbjct: 1026 PTSPTLSSLNPTMESSKTELSVLKSNDDAEKQTLSSKPGSHELKFQPSITPADKNHVEPT 1085
Query: 301 SKTQTVAKDVGGQVPNVIGNAQPQQPSVAFA---SPNLTSKIFANGRNEASNTAVTQDDD 360
SKTQTV KDVGGQVPNV+G+AQ QQPSVAFA S NLTSKIFAN RNE SN VTQDDD
Sbjct: 1086 SKTQTVFKDVGGQVPNVVGDAQAQQPSVAFASIPSQNLTSKIFANSRNETSNAVVTQDDD 1145
Query: 361 MDEEAPETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMTSSFTMASPP 420
MDEEAPETNNNVEFNLSSLGGFGNSSTP+SGAPKPNPFGGPFGNVNA S+T+SF MASPP
Sbjct: 1146 MDEEAPETNNNVEFNLSSLGGFGNSSTPISGAPKPNPFGGPFGNVNAASVTTSFNMASPP 1205
Query: 421 SGELFRPASFSFQSPLASQAASQPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQA 480
SGELFRPASFSFQSPLASQAASQPTNSVAFSG FGSA+ATQAP QGGFGQPAQIGVGQQA
Sbjct: 1206 SGELFRPASFSFQSPLASQAASQPTNSVAFSGAFGSAVATQAPPQGGFGQPAQIGVGQQA 1265
Query: 481 LGNVLGSFGQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGSSVGSGGFAGVG 540
LGNVLGSFGQSRQLGP+LPGTG+GSPGGFSGGFT+ KPVGV GGFAGVG
Sbjct: 1266 LGNVLGSFGQSRQLGPTLPGTGSGSPGGFSGGFTNAKPVGV------------GGFAGVG 1325
Query: 541 SGGGGGFGGVGSGGGGFAGTVSTGGGFAGASSTTGGFAAAAGGGFVGAAGGGFAGAAGGG 600
SGGGGGFGGV GGFAG STGGGFAGASSTT GGFAGAAGGG
Sbjct: 1326 SGGGGGFGGV----GGFAGAASTGGGFAGASSTT----------------GGFAGAAGGG 1385
Query: 601 FAGAAGGFGAFGSQQGS-GGFSAFG---AGGAGGTGKPPELFTQIRK 633
F G AGGFGAFGSQQ S GGFSAFG AGGA TGKPPELFTQIRK
Sbjct: 1386 FGGTAGGFGAFGSQQVSGGGFSAFGTAAAGGASVTGKPPELFTQIRK 1396
BLAST of Lsi04G007530 vs. ExPASy TrEMBL
Match:
A0A5A7SY34 (Nuclear pore complex protein NUP214 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G001060 PE=4 SV=1)
HSP 1 Score: 827.8 bits (2137), Expect = 3.1e-236
Identity = 511/647 (78.98%), Postives = 538/647 (83.15%), Query Frame = 0
Query: 1 MWASPLQPSNTSRQKSQSLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFT--- 60
MWAS LQPSNTSRQKS LQK NAT PSP VFQSSH+MLKK+NN A S SENKFT
Sbjct: 1077 MWASVLQPSNTSRQKSLPLQKTNATAPSPPPVFQSSHDMLKKNNNAAHSATSENKFTDMA 1136
Query: 61 --EKSKASDFFSVTRSDSVQKSNINLDQKSFIFTISSKQTPTLKDSIDTSNSDNQKTANA 120
EKSKASDFFS TRSDSVQKS IN+DQKS IFTISSKQTP +DSI TSN DNQKTAN
Sbjct: 1137 CPEKSKASDFFSATRSDSVQKSKINVDQKSSIFTISSKQTPPPEDSIGTSNVDNQKTANV 1196
Query: 121 KERHTTTSPLFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLN 180
KERHTTTS LFGSA+KPES VGTM SLVPTVD ARK EEK+S+TTIS SV AP A LN
Sbjct: 1197 KERHTTTSQLFGSANKPESPFVGTMPSLVPTVDGARKTEEKKSVTTISQSVSAP--APLN 1256
Query: 181 TTSSSSTLFSGFAVSKPLPSS---AAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIV 240
T+SS+STLFSGFAVSK LPSS AAV+DLNQP STSTQLNF SPVVS S+SLFQAPK V
Sbjct: 1257 TSSSASTLFSGFAVSKSLPSSAAVAAVVDLNQPQSTSTQLNF-SPVVSGSNSLFQAPK-V 1316
Query: 241 STSPTLSSLNPSLEPLKKELPILKSDDDTEKQTPASKPESYELKFQPSVTPADKNHVEPT 300
TSPTLSSLNP++E K EL +LKS+DD EKQT +SKP S+ELKFQPS+TPADKNHVEPT
Sbjct: 1317 PTSPTLSSLNPTMESSKTELSVLKSNDDAEKQTLSSKPGSHELKFQPSITPADKNHVEPT 1376
Query: 301 SKTQTVAKDVGGQVPNVIGNAQPQQPSVAFA---SPNLTSKIFANGRNEASNTAVTQDDD 360
SKTQTV KDVGGQVPNV+G+AQ QQPSVAFA S NLTSKIFAN RNE SN VTQDDD
Sbjct: 1377 SKTQTVFKDVGGQVPNVVGDAQAQQPSVAFASIPSQNLTSKIFANSRNETSNAVVTQDDD 1436
Query: 361 MDEEAPETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMTSSFTMASPP 420
MDEEAPETNNNVEFNLSSLGGFGNSSTP+SGAPKPNPFGGPFGNVNA S+T+SF MASPP
Sbjct: 1437 MDEEAPETNNNVEFNLSSLGGFGNSSTPISGAPKPNPFGGPFGNVNAASVTTSFNMASPP 1496
Query: 421 SGELFRPASFSFQSPLASQAASQPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQA 480
SGELFRPASFSFQSPLASQAASQPTNSVAFSG FGSA+ATQAP QGGFGQPAQIGVGQQA
Sbjct: 1497 SGELFRPASFSFQSPLASQAASQPTNSVAFSGAFGSAVATQAPPQGGFGQPAQIGVGQQA 1556
Query: 481 LGNVLGSFGQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGSSVGSGGFAGVG 540
LGNVLGSFGQSRQLGP+LPGTG+GSPGGFSGGFT+ KPVGV GGFAGVG
Sbjct: 1557 LGNVLGSFGQSRQLGPTLPGTGSGSPGGFSGGFTNAKPVGV------------GGFAGVG 1616
Query: 541 SGGGGGFGGVGSGGGGFAGTVSTGGGFAGASSTTGGFAAAAGGGFVGAAGGGFAGAAGGG 600
SGGGGGFGGV GGFAG STGGGFAGASSTT GGFAGAAGGG
Sbjct: 1617 SGGGGGFGGV----GGFAGAASTGGGFAGASSTT----------------GGFAGAAGGG 1676
Query: 601 FAGAAGGFGAFGSQQGS-GGFSAFG---AGGAGGTGKPPELFTQIRK 633
F G AGGFGAFGSQQ S GGFSAFG AGGA TGKPPELFTQIRK
Sbjct: 1677 FGGTAGGFGAFGSQQVSGGGFSAFGTAAAGGASVTGKPPELFTQIRK 1687
BLAST of Lsi04G007530 vs. ExPASy TrEMBL
Match:
A0A0A0KV45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G583270 PE=4 SV=1)
HSP 1 Score: 823.2 bits (2125), Expect = 7.6e-235
Identity = 510/688 (74.13%), Postives = 535/688 (77.76%), Query Frame = 0
Query: 1 MWASPLQPSNTSRQKSQSLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFT--- 60
MW SPLQPSNTSRQKS LQK N T PSP VFQSSH+MLKK NNEA SV SENKFT
Sbjct: 1051 MWNSPLQPSNTSRQKSLPLQKINVTPPSPPPVFQSSHDMLKKKNNEAHSVTSENKFTDVA 1110
Query: 61 --EKSKASDFFSVTRSDSVQKSNINLDQKSFIFTISSKQTPTLKDSIDTSNSDNQKTANA 120
EKSKASDFFS TRSDSVQKSNIN+DQKS IFTISSKQ PT DSI TSN DNQKTAN
Sbjct: 1111 CPEKSKASDFFSATRSDSVQKSNINVDQKSSIFTISSKQMPTPIDSIATSNVDNQKTANV 1170
Query: 121 KERHTTTSPLFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLN 180
KERHTTTSP FGSA+KPES VG+M SLVPTVD +RK EEK+S+TTIS SV AP A LN
Sbjct: 1171 KERHTTTSPFFGSANKPESPFVGSMPSLVPTVDGSRKTEEKKSVTTISQSVSAP--APLN 1230
Query: 181 TTSSSSTLFSGFAVSKPLPSSAAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIVSTS 240
T+SS+STLFSGFAVSK LPSSAAVIDLNQP STSTQLNFSSPVVS S+SLFQAPKIV TS
Sbjct: 1231 TSSSASTLFSGFAVSKALPSSAAVIDLNQPPSTSTQLNFSSPVVSSSNSLFQAPKIVPTS 1290
Query: 241 PTLSSLNPSLEPLKKELPILKSDDDTEKQTPASKPESYELKFQPSVTPADKNHVEPTSKT 300
PTLSSLNP+LE K EL + KS+DD E+Q +SKP S+ELKFQPS+TPADKNHVEPTSKT
Sbjct: 1291 PTLSSLNPTLESSKTELSVPKSNDDAEEQILSSKPGSHELKFQPSITPADKNHVEPTSKT 1350
Query: 301 QTVAKDVGGQVPNVIGNAQPQQPSVAFA---SPNLTSKIFANGRNEASNTAVTQDDDMDE 360
QTV KDVGGQ NV+GNAQPQQPSVAFA SPNLTSKIFAN RNE SN VTQDDDMDE
Sbjct: 1351 QTVFKDVGGQDSNVVGNAQPQQPSVAFASIPSPNLTSKIFANSRNETSNAVVTQDDDMDE 1410
Query: 361 EAPETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMTSSFTMASPPSGE 420
EAPETNNNVEFNLSSLGGFGNSSTP+SG PKPNPFGGPFGNVNA SMTSSF MASPPSGE
Sbjct: 1411 EAPETNNNVEFNLSSLGGFGNSSTPISGGPKPNPFGGPFGNVNAASMTSSFNMASPPSGE 1470
Query: 421 LFRPASFSFQSPLASQAASQPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQALGN 480
LFRPASFSFQSPLASQAASQPTNSVAFSG FGSA+ TQ PSQGGFGQP+QIGVGQQALGN
Sbjct: 1471 LFRPASFSFQSPLASQAASQPTNSVAFSGAFGSAVPTQPPSQGGFGQPSQIGVGQQALGN 1530
Query: 481 VLGSFGQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGSSVGSGGFAGVGSGG 540
VLGSFGQSRQLGP++ GTG+GSPGGFSGGFT+ KPVGV GGFAGVGSGG
Sbjct: 1531 VLGSFGQSRQLGPTVHGTGSGSPGGFSGGFTNAKPVGV------------GGFAGVGSGG 1590
Query: 541 GGGFGGVGSGGGGFAGTVSTGGGFAGASSTTGGFAAAAGGGFVGAAGGGFAGAAGGGFAG 600
GGGFGGV GGFAG STGGGFAGASST GGFAGAAGGGF G
Sbjct: 1591 GGGFGGV----GGFAGAASTGGGFAGASST----------------AGGFAGAAGGGFGG 1650
Query: 601 AAGGFGAFGSQQGSGGFSAFG--------------------------------------- 633
AGGFGAFGSQQ SGGFSAFG
Sbjct: 1651 TAGGFGAFGSQQVSGGFSAFGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1704
BLAST of Lsi04G007530 vs. ExPASy TrEMBL
Match:
A0A1S3BDU8 (LOW QUALITY PROTEIN: nuclear pore complex protein NUP214 OS=Cucumis melo OX=3656 GN=LOC103488807 PE=4 SV=1)
HSP 1 Score: 805.1 bits (2078), Expect = 2.1e-229
Identity = 501/646 (77.55%), Postives = 530/646 (82.04%), Query Frame = 0
Query: 1 MWASPLQPSNTSRQKSQSLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKF---- 60
MWAS LQPSNTSRQKS LQK NAT PSP VFQSSH+MLKK + + +
Sbjct: 1051 MWASVLQPSNTSRQKSLPLQKTNATAPSPPPVFQSSHDMLKKIIMQLTVRLQKTNLRTWH 1110
Query: 61 TEKSKASDFFSVTRSDSVQKSNINLDQKSFIFTISSKQTPTLKDSIDTSNSDNQKTANAK 120
EKSKASDFFS TRSDSVQKS IN+DQKS IFTISSKQTP +DSI TSN DNQKTAN K
Sbjct: 1111 PEKSKASDFFSATRSDSVQKSKINVDQKSSIFTISSKQTPPPEDSIGTSNVDNQKTANVK 1170
Query: 121 ERHTTTSPLFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLNT 180
ERHTTTS LFGSA+KPES VGTM SLVPTVD ARK EEK+S+TTIS SV AP A LNT
Sbjct: 1171 ERHTTTSQLFGSANKPESPFVGTMPSLVPTVDGARKTEEKKSVTTISQSVSAP--APLNT 1230
Query: 181 TSSSSTLFSGFAVSKPLPSS---AAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIVS 240
+SS+STLFSGFAVSK LPSS AAV+DLNQP STSTQLNF SPVVS S+SLFQAPK V
Sbjct: 1231 SSSASTLFSGFAVSKSLPSSAAVAAVVDLNQPQSTSTQLNF-SPVVSGSNSLFQAPK-VP 1290
Query: 241 TSPTLSSLNPSLEPLKKELPILKSDDDTEKQTPASKPESYELKFQPSVTPADKNHVEPTS 300
TSPTLSSLNP++E K EL +LKS+DD EKQT +SKP S+ELKFQPS+TPADKNHVEPTS
Sbjct: 1291 TSPTLSSLNPTMESSKTELSVLKSNDDAEKQTLSSKPGSHELKFQPSITPADKNHVEPTS 1350
Query: 301 KTQTVAKDVGGQVPNVIGNAQPQQPSVAFA---SPNLTSKIFANGRNEASNTAVTQDDDM 360
KTQTV KDVGGQVPNV+G+AQ QQPSVAFA S NLTSKIFAN RNE SN VTQDDDM
Sbjct: 1351 KTQTVFKDVGGQVPNVVGDAQAQQPSVAFASIPSQNLTSKIFANSRNETSNAVVTQDDDM 1410
Query: 361 DEEAPETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMTSSFTMASPPS 420
DEEAPETNNNVEFNLSSLGGFGNSSTP+SGAPKPNPFGGPFGNVNA S+T+SF MASPPS
Sbjct: 1411 DEEAPETNNNVEFNLSSLGGFGNSSTPISGAPKPNPFGGPFGNVNAASVTTSFNMASPPS 1470
Query: 421 GELFRPASFSFQSPLASQAASQPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQAL 480
GELFRPASFSFQSPLASQAASQPTNSVAFSG FGSA+ATQAP QGGFGQPAQIGVGQQAL
Sbjct: 1471 GELFRPASFSFQSPLASQAASQPTNSVAFSGAFGSAVATQAPPQGGFGQPAQIGVGQQAL 1530
Query: 481 GNVLGSFGQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGSSVGSGGFAGVGS 540
GNVLGSFGQSRQLGP+LPGTG+GSPGGFSGGFT+ KPVGV GGFAGVGS
Sbjct: 1531 GNVLGSFGQSRQLGPTLPGTGSGSPGGFSGGFTNAKPVGV------------GGFAGVGS 1590
Query: 541 GGGGGFGGVGSGGGGFAGTVSTGGGFAGASSTTGGFAAAAGGGFVGAAGGGFAGAAGGGF 600
GGGGGFGGV GGFAG STGGGFAGASSTT GGFAGAAGGGF
Sbjct: 1591 GGGGGFGGV----GGFAGAASTGGGFAGASSTT----------------GGFAGAAGGGF 1650
Query: 601 AGAAGGFGAFGSQQGS-GGFSAFG---AGGAGGTGKPPELFTQIRK 633
G AGGFGAFGSQQ S GGFSAFG AGGA TGKPPELFTQIRK
Sbjct: 1651 GGTAGGFGAFGSQQVSGGGFSAFGTAAAGGASVTGKPPELFTQIRK 1660
BLAST of Lsi04G007530 vs. ExPASy TrEMBL
Match:
A0A6J1G030 (nuclear pore complex protein NUP214 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449495 PE=4 SV=1)
HSP 1 Score: 764.2 bits (1972), Expect = 4.2e-217
Identity = 474/641 (73.95%), Postives = 516/641 (80.50%), Query Frame = 0
Query: 3 ASPLQPSNTSRQKSQSLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFT----- 62
A+P ++ RQK Q LQK N T PS L VFQSSHEM+KKSN+EA+S SENKF
Sbjct: 1055 ATPFSWASPPRQKFQPLQKTNGTAPSSLPVFQSSHEMVKKSNSEAYSAASENKFAEVTYP 1114
Query: 63 EKSKASDFFSVTRSDSVQKSNINLDQKSFIFTISSKQTPTLKDSIDTSNSDNQKTANAKE 122
EKSKASDFFS+ RSDSVQKSN+N +QKS IF SSK T KDSI+T N ++QKTAN KE
Sbjct: 1115 EKSKASDFFSLARSDSVQKSNMNFEQKSSIFVTSSKPMSTPKDSIETLNPNSQKTANVKE 1174
Query: 123 RHTTTSPLFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLNTT 182
R TT SPLFGSA+KPE SVGT SSLVPTVD RK EEK+ T SPSVPAP A +NT
Sbjct: 1175 RLTTPSPLFGSANKPEPVSVGTTSSLVPTVDGLRKTEEKKPPTVFSPSVPAP--APVNTP 1234
Query: 183 SSSSTLFSGFAVSKPLPSSAAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIVSTSPT 242
S+STLFSG +SK PS AAV+DLN+PLSTSTQ +F+SPVVS+SDSLFQAPK+VS
Sbjct: 1235 PSASTLFSGSPLSKSFPSPAAVVDLNKPLSTSTQSSFASPVVSVSDSLFQAPKMVSPPSN 1294
Query: 243 LSSLNPSLEPLKKELPILKSDDDTEKQTPASKPESYELKFQPSVTPADKNHVEPTSKTQT 302
LSSLNP+L KE P+ KSD DTEKQ PASKPES ELK QPSVT A NHVEPTS TQT
Sbjct: 1295 LSSLNPTLVSSSKEQPMPKSDADTEKQAPASKPESRELKLQPSVTLAVGNHVEPTSVTQT 1354
Query: 303 VAKDVGGQVPNVIGNAQPQQPSVAFA---SPNLTSKIFANGRNEASNTAVTQDDDMDEEA 362
V+KDVGG VP V+ +AQPQQ AF +PN TSK ANG++E S+ +TQDDDMDEEA
Sbjct: 1355 VSKDVGGHVPFVVADAQPQQSPAAFVPLPTPNSTSKAAANGKSETSDALITQDDDMDEEA 1414
Query: 363 PETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMTSSFTMASPPSGELF 422
PET NNVEF+LSSLGGFG +STPMS APKPNPFGG FGNVNATSM SSFT ASPPSGELF
Sbjct: 1415 PET-NNVEFSLSSLGGFGTTSTPMSNAPKPNPFGGSFGNVNATSMNSSFTTASPPSGELF 1474
Query: 423 RPASFSFQSPLASQAASQPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQALGNVL 482
RPASFSFQSPLASQAASQPTN+VAFSG FGS MATQAP+QGGFGQPAQIGVGQQALG VL
Sbjct: 1475 RPASFSFQSPLASQAASQPTNAVAFSGSFGSGMATQAPAQGGFGQPAQIGVGQQALGTVL 1534
Query: 483 GSFGQSRQLGPSLPGTGTGSPGGFS-GGFTSLKPVGVGGFAGAGSSVGSGGFAGVGSGGG 542
GSFGQSRQLGPSLPGT +GSPGGF+ GGFTS+KPVG GGFAGVGSGGG
Sbjct: 1535 GSFGQSRQLGPSLPGTASGSPGGFNGGGFTSVKPVG-------------GGFAGVGSGGG 1594
Query: 543 GGFGGVGSGGGGFAGTVSTGGGFAGASSTTGGFAAAAGGGFVGAAGGGFAGAAGGGFAGA 602
GGFGG G GGGFAG STGGGFAGAS TGGFA A GGGF GAAGGGFAGAAGGGFAGA
Sbjct: 1595 GGFGGGGFSGGGFAGAASTGGGFAGASPPTGGFAGATGGGFAGAAGGGFAGAAGGGFAGA 1654
Query: 603 AGGFGAFGSQQGSGGFSAFGA--GGAGGTGKPPELFTQIRK 633
AGGFGAFG+QQGSGGFSAFGA GG+GGTGKPPELFTQIRK
Sbjct: 1655 AGGFGAFGNQQGSGGFSAFGAAPGGSGGTGKPPELFTQIRK 1679
BLAST of Lsi04G007530 vs. NCBI nr
Match:
XP_038892124.1 (nuclear pore complex protein NUP214 isoform X2 [Benincasa hispida])
HSP 1 Score: 936.0 bits (2418), Expect = 1.7e-268
Identity = 554/637 (86.97%), Postives = 575/637 (90.27%), Query Frame = 0
Query: 1 MWASPLQPSNTSRQKSQSLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFTEKS 60
MWASPLQPSN SRQKSQ LQK NAT PS LSVFQSSHEMLKKSNNEAFSV SENKFTEKS
Sbjct: 1054 MWASPLQPSNISRQKSQPLQKTNATAPS-LSVFQSSHEMLKKSNNEAFSVTSENKFTEKS 1113
Query: 61 KASDFFSVTRSDSVQKSNINLDQKSFIFTISSKQTPTLKDSIDTSNSDNQKTANAKERHT 120
KASDFFSVTR+DSVQKSN NLD+K IFTISSKQ T KD IDTSN DNQKTAN+KERHT
Sbjct: 1114 KASDFFSVTRTDSVQKSNTNLDKKPSIFTISSKQMATPKDFIDTSNLDNQKTANSKERHT 1173
Query: 121 TTSPLFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLNTTSSS 180
TTSPLFGSA+KPESASVGTMSSLVPTVDEARK EKRSL TISPSVPAP AR N+ SSS
Sbjct: 1174 TTSPLFGSANKPESASVGTMSSLVPTVDEARK--EKRSLKTISPSVPAPTPARFNSPSSS 1233
Query: 181 STLFSGFAVSKPLPSSAAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIVSTSPTLSS 240
STLFSGFAVSKPLPSSAA IDLNQPLSTSTQLNFSSPVVS+SDSLFQA K+VSTS TLSS
Sbjct: 1234 STLFSGFAVSKPLPSSAAAIDLNQPLSTSTQLNFSSPVVSVSDSLFQATKMVSTSSTLSS 1293
Query: 241 LNPSLEPLKKELPILKSDDDTEKQTPASKPESYELKFQPSVTPADKNHVEPTSKTQTVAK 300
LNP LE KKELP+ KS+ DTEK+TPASKPES+ELKFQPS+TPA+KNH+EPTSKTQTV K
Sbjct: 1294 LNPILESSKKELPVSKSEGDTEKKTPASKPESHELKFQPSITPANKNHLEPTSKTQTVPK 1353
Query: 301 DVGGQVPNVIGNAQPQQPSVAFA---SPNLTSKIFANGRNEASNTAVTQDDDMDEEAPET 360
DVGGQ+PNVIG+AQPQ PSVAFA SPNLTSK NGRNE SN VTQDDDMDEEAPET
Sbjct: 1354 DVGGQIPNVIGDAQPQPPSVAFASLPSPNLTSKTSGNGRNETSNVTVTQDDDMDEEAPET 1413
Query: 361 NNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMTSSFTMASPPSGELFRPA 420
NNVEFNLS LGGFGNSS+PMSGAPKPNPFGG FGNVNATSMTSSFTMASPPSGELFRPA
Sbjct: 1414 INNVEFNLSGLGGFGNSSSPMSGAPKPNPFGGSFGNVNATSMTSSFTMASPPSGELFRPA 1473
Query: 421 SFSFQSPLASQAASQPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQALGNVLGSF 480
SFSFQSPLASQAAS PTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQALGNVLGSF
Sbjct: 1474 SFSFQSPLASQAASLPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQALGNVLGSF 1533
Query: 481 GQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGSSVGSGGFAGVGSGGGGGFG 540
GQSRQLGPSLPGTG+GS G FSGGFT +KPV VGGFAG GSS GSGGFAGVGSGGGGGFG
Sbjct: 1534 GQSRQLGPSLPGTGSGSLGSFSGGFTGMKPVAVGGFAGVGSSGGSGGFAGVGSGGGGGFG 1593
Query: 541 GVGSGGGGFAGTVSTGGGFAGASSTTGGFAAAAGGGFVGAAGGGFAGAAGGGFAGAAGGF 600
GVGS GGFAGT+STGGGFAGAS+TTGGFA GAAGGGFAGAAGGGFAGAAGGF
Sbjct: 1594 GVGSAAGGFAGTISTGGGFAGASATTGGFA--------GAAGGGFAGAAGGGFAGAAGGF 1653
Query: 601 GAFGSQQGSGGFSAFG--AGGAGGTGKPPELFTQIRK 633
GAFGSQQGSGGFSAFG AGGAGGTGKPPELFTQIRK
Sbjct: 1654 GAFGSQQGSGGFSAFGAAAGGAGGTGKPPELFTQIRK 1679
BLAST of Lsi04G007530 vs. NCBI nr
Match:
XP_038892123.1 (nuclear pore complex protein NUP214 isoform X1 [Benincasa hispida])
HSP 1 Score: 936.0 bits (2418), Expect = 1.7e-268
Identity = 554/637 (86.97%), Postives = 575/637 (90.27%), Query Frame = 0
Query: 1 MWASPLQPSNTSRQKSQSLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFTEKS 60
MWASPLQPSN SRQKSQ LQK NAT PS LSVFQSSHEMLKKSNNEAFSV SENKFTEKS
Sbjct: 1059 MWASPLQPSNISRQKSQPLQKTNATAPS-LSVFQSSHEMLKKSNNEAFSVTSENKFTEKS 1118
Query: 61 KASDFFSVTRSDSVQKSNINLDQKSFIFTISSKQTPTLKDSIDTSNSDNQKTANAKERHT 120
KASDFFSVTR+DSVQKSN NLD+K IFTISSKQ T KD IDTSN DNQKTAN+KERHT
Sbjct: 1119 KASDFFSVTRTDSVQKSNTNLDKKPSIFTISSKQMATPKDFIDTSNLDNQKTANSKERHT 1178
Query: 121 TTSPLFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLNTTSSS 180
TTSPLFGSA+KPESASVGTMSSLVPTVDEARK EKRSL TISPSVPAP AR N+ SSS
Sbjct: 1179 TTSPLFGSANKPESASVGTMSSLVPTVDEARK--EKRSLKTISPSVPAPTPARFNSPSSS 1238
Query: 181 STLFSGFAVSKPLPSSAAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIVSTSPTLSS 240
STLFSGFAVSKPLPSSAA IDLNQPLSTSTQLNFSSPVVS+SDSLFQA K+VSTS TLSS
Sbjct: 1239 STLFSGFAVSKPLPSSAAAIDLNQPLSTSTQLNFSSPVVSVSDSLFQATKMVSTSSTLSS 1298
Query: 241 LNPSLEPLKKELPILKSDDDTEKQTPASKPESYELKFQPSVTPADKNHVEPTSKTQTVAK 300
LNP LE KKELP+ KS+ DTEK+TPASKPES+ELKFQPS+TPA+KNH+EPTSKTQTV K
Sbjct: 1299 LNPILESSKKELPVSKSEGDTEKKTPASKPESHELKFQPSITPANKNHLEPTSKTQTVPK 1358
Query: 301 DVGGQVPNVIGNAQPQQPSVAFA---SPNLTSKIFANGRNEASNTAVTQDDDMDEEAPET 360
DVGGQ+PNVIG+AQPQ PSVAFA SPNLTSK NGRNE SN VTQDDDMDEEAPET
Sbjct: 1359 DVGGQIPNVIGDAQPQPPSVAFASLPSPNLTSKTSGNGRNETSNVTVTQDDDMDEEAPET 1418
Query: 361 NNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMTSSFTMASPPSGELFRPA 420
NNVEFNLS LGGFGNSS+PMSGAPKPNPFGG FGNVNATSMTSSFTMASPPSGELFRPA
Sbjct: 1419 INNVEFNLSGLGGFGNSSSPMSGAPKPNPFGGSFGNVNATSMTSSFTMASPPSGELFRPA 1478
Query: 421 SFSFQSPLASQAASQPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQALGNVLGSF 480
SFSFQSPLASQAAS PTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQALGNVLGSF
Sbjct: 1479 SFSFQSPLASQAASLPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQALGNVLGSF 1538
Query: 481 GQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGSSVGSGGFAGVGSGGGGGFG 540
GQSRQLGPSLPGTG+GS G FSGGFT +KPV VGGFAG GSS GSGGFAGVGSGGGGGFG
Sbjct: 1539 GQSRQLGPSLPGTGSGSLGSFSGGFTGMKPVAVGGFAGVGSSGGSGGFAGVGSGGGGGFG 1598
Query: 541 GVGSGGGGFAGTVSTGGGFAGASSTTGGFAAAAGGGFVGAAGGGFAGAAGGGFAGAAGGF 600
GVGS GGFAGT+STGGGFAGAS+TTGGFA GAAGGGFAGAAGGGFAGAAGGF
Sbjct: 1599 GVGSAAGGFAGTISTGGGFAGASATTGGFA--------GAAGGGFAGAAGGGFAGAAGGF 1658
Query: 601 GAFGSQQGSGGFSAFG--AGGAGGTGKPPELFTQIRK 633
GAFGSQQGSGGFSAFG AGGAGGTGKPPELFTQIRK
Sbjct: 1659 GAFGSQQGSGGFSAFGAAAGGAGGTGKPPELFTQIRK 1684
BLAST of Lsi04G007530 vs. NCBI nr
Match:
XP_031741375.1 (nuclear pore complex protein NUP214 isoform X2 [Cucumis sativus])
HSP 1 Score: 839.0 bits (2166), Expect = 2.8e-239
Identity = 510/647 (78.83%), Postives = 535/647 (82.69%), Query Frame = 0
Query: 1 MWASPLQPSNTSRQKSQSLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFT--- 60
MW SPLQPSNTSRQKS LQK N T PSP VFQSSH+MLKK NNEA SV SENKFT
Sbjct: 1041 MWNSPLQPSNTSRQKSLPLQKINVTPPSPPPVFQSSHDMLKKKNNEAHSVTSENKFTDVA 1100
Query: 61 --EKSKASDFFSVTRSDSVQKSNINLDQKSFIFTISSKQTPTLKDSIDTSNSDNQKTANA 120
EKSKASDFFS TRSDSVQKSNIN+DQKS IFTISSKQ PT DSI TSN DNQKTAN
Sbjct: 1101 CPEKSKASDFFSATRSDSVQKSNINVDQKSSIFTISSKQMPTPIDSIATSNVDNQKTANV 1160
Query: 121 KERHTTTSPLFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLN 180
KERHTTTSP FGSA+KPES VG+M SLVPTVD +RK EEK+S+TTIS SV AP A LN
Sbjct: 1161 KERHTTTSPFFGSANKPESPFVGSMPSLVPTVDGSRKTEEKKSVTTISQSVSAP--APLN 1220
Query: 181 TTSSSSTLFSGFAVSKPLPSSAAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIVSTS 240
T+SS+STLFSGFAVSK LPSSAAVIDLNQP STSTQLNFSSPVVS S+SLFQAPKIV TS
Sbjct: 1221 TSSSASTLFSGFAVSKALPSSAAVIDLNQPPSTSTQLNFSSPVVSSSNSLFQAPKIVPTS 1280
Query: 241 PTLSSLNPSLEPLKKELPILKSDDDTEKQTPASKPESYELKFQPSVTPADKNHVEPTSKT 300
PTLSSLNP+LE K EL + KS+DD E+Q +SKP S+ELKFQPS+TPADKNHVEPTSKT
Sbjct: 1281 PTLSSLNPTLESSKTELSVPKSNDDAEEQILSSKPGSHELKFQPSITPADKNHVEPTSKT 1340
Query: 301 QTVAKDVGGQVPNVIGNAQPQQPSVAFA---SPNLTSKIFANGRNEASNTAVTQDDDMDE 360
QTV KDVGGQ NV+GNAQPQQPSVAFA SPNLTSKIFAN RNE SN VTQDDDMDE
Sbjct: 1341 QTVFKDVGGQDSNVVGNAQPQQPSVAFASIPSPNLTSKIFANSRNETSNAVVTQDDDMDE 1400
Query: 361 EAPETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMTSSFTMASPPSGE 420
EAPETNNNVEFNLSSLGGFGNSSTP+SG PKPNPFGGPFGNVNA SMTSSF MASPPSGE
Sbjct: 1401 EAPETNNNVEFNLSSLGGFGNSSTPISGGPKPNPFGGPFGNVNAASMTSSFNMASPPSGE 1460
Query: 421 LFRPASFSFQSPLASQAASQPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQALGN 480
LFRPASFSFQSPLASQAASQPTNSVAFSG FGSA+ TQ PSQGGFGQP+QIGVGQQALGN
Sbjct: 1461 LFRPASFSFQSPLASQAASQPTNSVAFSGAFGSAVPTQPPSQGGFGQPSQIGVGQQALGN 1520
Query: 481 VLGSFGQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGSSVGSGGFAGVGSGG 540
VLGSFGQSRQLGP++ GTG+GSPGGFSGGFT+ KPVGV GGFAGVGSGG
Sbjct: 1521 VLGSFGQSRQLGPTVHGTGSGSPGGFSGGFTNAKPVGV------------GGFAGVGSGG 1580
Query: 541 GGGFGGVGSGGGGFAGTVSTGGGFAGASSTTGGFAAAAGGGFVGAAGGGFAGAAGGGFAG 600
GGGFGGV GGFAG STGGGFAGASST GGFAGAAGGGF G
Sbjct: 1581 GGGFGGV----GGFAGAASTGGGFAGASST----------------AGGFAGAAGGGFGG 1640
Query: 601 AAGGFGAFGSQQGSGGFSAFG-------AGGAGGTGKPPELFTQIRK 633
AGGFGAFGSQQ SGGFSAFG AGGAG TGKPPELFTQIRK
Sbjct: 1641 TAGGFGAFGSQQVSGGFSAFGAAAAAAAAGGAGVTGKPPELFTQIRK 1653
BLAST of Lsi04G007530 vs. NCBI nr
Match:
XP_031741374.1 (nuclear pore complex protein NUP214 isoform X1 [Cucumis sativus] >KGN52214.2 hypothetical protein Csa_008316 [Cucumis sativus])
HSP 1 Score: 839.0 bits (2166), Expect = 2.8e-239
Identity = 510/647 (78.83%), Postives = 535/647 (82.69%), Query Frame = 0
Query: 1 MWASPLQPSNTSRQKSQSLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFT--- 60
MW SPLQPSNTSRQKS LQK N T PSP VFQSSH+MLKK NNEA SV SENKFT
Sbjct: 1051 MWNSPLQPSNTSRQKSLPLQKINVTPPSPPPVFQSSHDMLKKKNNEAHSVTSENKFTDVA 1110
Query: 61 --EKSKASDFFSVTRSDSVQKSNINLDQKSFIFTISSKQTPTLKDSIDTSNSDNQKTANA 120
EKSKASDFFS TRSDSVQKSNIN+DQKS IFTISSKQ PT DSI TSN DNQKTAN
Sbjct: 1111 CPEKSKASDFFSATRSDSVQKSNINVDQKSSIFTISSKQMPTPIDSIATSNVDNQKTANV 1170
Query: 121 KERHTTTSPLFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLN 180
KERHTTTSP FGSA+KPES VG+M SLVPTVD +RK EEK+S+TTIS SV AP A LN
Sbjct: 1171 KERHTTTSPFFGSANKPESPFVGSMPSLVPTVDGSRKTEEKKSVTTISQSVSAP--APLN 1230
Query: 181 TTSSSSTLFSGFAVSKPLPSSAAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIVSTS 240
T+SS+STLFSGFAVSK LPSSAAVIDLNQP STSTQLNFSSPVVS S+SLFQAPKIV TS
Sbjct: 1231 TSSSASTLFSGFAVSKALPSSAAVIDLNQPPSTSTQLNFSSPVVSSSNSLFQAPKIVPTS 1290
Query: 241 PTLSSLNPSLEPLKKELPILKSDDDTEKQTPASKPESYELKFQPSVTPADKNHVEPTSKT 300
PTLSSLNP+LE K EL + KS+DD E+Q +SKP S+ELKFQPS+TPADKNHVEPTSKT
Sbjct: 1291 PTLSSLNPTLESSKTELSVPKSNDDAEEQILSSKPGSHELKFQPSITPADKNHVEPTSKT 1350
Query: 301 QTVAKDVGGQVPNVIGNAQPQQPSVAFA---SPNLTSKIFANGRNEASNTAVTQDDDMDE 360
QTV KDVGGQ NV+GNAQPQQPSVAFA SPNLTSKIFAN RNE SN VTQDDDMDE
Sbjct: 1351 QTVFKDVGGQDSNVVGNAQPQQPSVAFASIPSPNLTSKIFANSRNETSNAVVTQDDDMDE 1410
Query: 361 EAPETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMTSSFTMASPPSGE 420
EAPETNNNVEFNLSSLGGFGNSSTP+SG PKPNPFGGPFGNVNA SMTSSF MASPPSGE
Sbjct: 1411 EAPETNNNVEFNLSSLGGFGNSSTPISGGPKPNPFGGPFGNVNAASMTSSFNMASPPSGE 1470
Query: 421 LFRPASFSFQSPLASQAASQPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQALGN 480
LFRPASFSFQSPLASQAASQPTNSVAFSG FGSA+ TQ PSQGGFGQP+QIGVGQQALGN
Sbjct: 1471 LFRPASFSFQSPLASQAASQPTNSVAFSGAFGSAVPTQPPSQGGFGQPSQIGVGQQALGN 1530
Query: 481 VLGSFGQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGSSVGSGGFAGVGSGG 540
VLGSFGQSRQLGP++ GTG+GSPGGFSGGFT+ KPVGV GGFAGVGSGG
Sbjct: 1531 VLGSFGQSRQLGPTVHGTGSGSPGGFSGGFTNAKPVGV------------GGFAGVGSGG 1590
Query: 541 GGGFGGVGSGGGGFAGTVSTGGGFAGASSTTGGFAAAAGGGFVGAAGGGFAGAAGGGFAG 600
GGGFGGV GGFAG STGGGFAGASST GGFAGAAGGGF G
Sbjct: 1591 GGGFGGV----GGFAGAASTGGGFAGASST----------------AGGFAGAAGGGFGG 1650
Query: 601 AAGGFGAFGSQQGSGGFSAFG-------AGGAGGTGKPPELFTQIRK 633
AGGFGAFGSQQ SGGFSAFG AGGAG TGKPPELFTQIRK
Sbjct: 1651 TAGGFGAFGSQQVSGGFSAFGAAAAAAAAGGAGVTGKPPELFTQIRK 1663
BLAST of Lsi04G007530 vs. NCBI nr
Match:
TYK15805.1 (nuclear pore complex protein NUP214 [Cucumis melo var. makuwa])
HSP 1 Score: 827.8 bits (2137), Expect = 6.4e-236
Identity = 511/647 (78.98%), Postives = 538/647 (83.15%), Query Frame = 0
Query: 1 MWASPLQPSNTSRQKSQSLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFT--- 60
MWAS LQPSNTSRQKS LQK NAT PSP VFQSSH+MLKK+NN A S SENKFT
Sbjct: 786 MWASVLQPSNTSRQKSLPLQKTNATAPSPPPVFQSSHDMLKKNNNAAHSATSENKFTDMA 845
Query: 61 --EKSKASDFFSVTRSDSVQKSNINLDQKSFIFTISSKQTPTLKDSIDTSNSDNQKTANA 120
EKSKASDFFS TRSDSVQKS IN+DQKS IFTISSKQTP +DSI TSN DNQKTAN
Sbjct: 846 CPEKSKASDFFSATRSDSVQKSKINVDQKSSIFTISSKQTPPPEDSIGTSNVDNQKTANV 905
Query: 121 KERHTTTSPLFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLN 180
KERHTTTS LFGSA+KPES VGTM SLVPTVD ARK EEK+S+TTIS SV AP A LN
Sbjct: 906 KERHTTTSQLFGSANKPESPFVGTMPSLVPTVDGARKTEEKKSVTTISQSVSAP--APLN 965
Query: 181 TTSSSSTLFSGFAVSKPLPSS---AAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIV 240
T+SS+STLFSGFAVSK LPSS AAV+DLNQP STSTQLNF SPVVS S+SLFQAPK V
Sbjct: 966 TSSSASTLFSGFAVSKSLPSSAAVAAVVDLNQPQSTSTQLNF-SPVVSGSNSLFQAPK-V 1025
Query: 241 STSPTLSSLNPSLEPLKKELPILKSDDDTEKQTPASKPESYELKFQPSVTPADKNHVEPT 300
TSPTLSSLNP++E K EL +LKS+DD EKQT +SKP S+ELKFQPS+TPADKNHVEPT
Sbjct: 1026 PTSPTLSSLNPTMESSKTELSVLKSNDDAEKQTLSSKPGSHELKFQPSITPADKNHVEPT 1085
Query: 301 SKTQTVAKDVGGQVPNVIGNAQPQQPSVAFA---SPNLTSKIFANGRNEASNTAVTQDDD 360
SKTQTV KDVGGQVPNV+G+AQ QQPSVAFA S NLTSKIFAN RNE SN VTQDDD
Sbjct: 1086 SKTQTVFKDVGGQVPNVVGDAQAQQPSVAFASIPSQNLTSKIFANSRNETSNAVVTQDDD 1145
Query: 361 MDEEAPETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMTSSFTMASPP 420
MDEEAPETNNNVEFNLSSLGGFGNSSTP+SGAPKPNPFGGPFGNVNA S+T+SF MASPP
Sbjct: 1146 MDEEAPETNNNVEFNLSSLGGFGNSSTPISGAPKPNPFGGPFGNVNAASVTTSFNMASPP 1205
Query: 421 SGELFRPASFSFQSPLASQAASQPTNSVAFSGGFGSAMATQAPSQGGFGQPAQIGVGQQA 480
SGELFRPASFSFQSPLASQAASQPTNSVAFSG FGSA+ATQAP QGGFGQPAQIGVGQQA
Sbjct: 1206 SGELFRPASFSFQSPLASQAASQPTNSVAFSGAFGSAVATQAPPQGGFGQPAQIGVGQQA 1265
Query: 481 LGNVLGSFGQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGSSVGSGGFAGVG 540
LGNVLGSFGQSRQLGP+LPGTG+GSPGGFSGGFT+ KPVGV GGFAGVG
Sbjct: 1266 LGNVLGSFGQSRQLGPTLPGTGSGSPGGFSGGFTNAKPVGV------------GGFAGVG 1325
Query: 541 SGGGGGFGGVGSGGGGFAGTVSTGGGFAGASSTTGGFAAAAGGGFVGAAGGGFAGAAGGG 600
SGGGGGFGGV GGFAG STGGGFAGASSTT GGFAGAAGGG
Sbjct: 1326 SGGGGGFGGV----GGFAGAASTGGGFAGASSTT----------------GGFAGAAGGG 1385
Query: 601 FAGAAGGFGAFGSQQGS-GGFSAFG---AGGAGGTGKPPELFTQIRK 633
F G AGGFGAFGSQQ S GGFSAFG AGGA TGKPPELFTQIRK
Sbjct: 1386 FGGTAGGFGAFGSQQVSGGGFSAFGTAAAGGASVTGKPPELFTQIRK 1396
BLAST of Lsi04G007530 vs. TAIR 10
Match:
AT1G55540.1 (Nuclear pore complex protein )
HSP 1 Score: 188.0 bits (476), Expect = 2.4e-47
Identity = 249/671 (37.11%), Postives = 333/671 (49.63%), Query Frame = 0
Query: 18 SLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFTEKSKASDFFSVTRSDSV--- 77
S+Q+ + T S S F+SS K FS +S + F S S+
Sbjct: 1182 SVQRLSTT--SSGSDFESS-----KGFGAQFSTMSSGAPASSFSSKSLFGFNSSSSIPGD 1241
Query: 78 ---------QKSNINLDQKSFIFT-----ISSKQTPTLKDSIDTSNSDNQKTANAKERHT 137
S LD S +FT +SS + SI S++ +T + T
Sbjct: 1242 KFTFPAVTAPLSGTPLDSTSTLFTASSAPVSSSSQDPVPASIPISSAPVPQTFSVTSTST 1301
Query: 138 TTSP----LFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLNT 197
++ FG + + P+ +L +SPS P +++
Sbjct: 1302 VSATGFNVPFGKPLTSVKVDLNQAAPSTPSPSPGPTAGFTFNLPALSPSSP----EMVSS 1361
Query: 198 TSSSSTLFSGFA----VSKPLPSSAAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIV 257
++ S+LF A VS S+ + + + L +ST L+ S+P ++ D+ FQ+P++
Sbjct: 1362 STGQSSLFPPSAPTSQVSSDQASATSSLTDSSRLFSSTSLS-STPPITPPDA-FQSPQVS 1421
Query: 258 STSPTLSSLNPSLEPLKKEL---PILKSDDDTEKQTPASKPESYELKFQ-------PSVT 317
+ S + P EP K E IL + + A+K ++ L + +VT
Sbjct: 1422 TPSSAVPITEPVSEPKKPEAQSSSILSTQSTVDSVANATKTQNEPLPVKSEISNPGTTVT 1481
Query: 318 PADKNHVEP--TSKTQTVAKDVGGQVPNVIGNAQPQQPSVAFASPNLTSKIFANGRNEAS 377
P + +S TQ+ + + G++QPQQ S A +S A+ E
Sbjct: 1482 PVSSSGFLSGFSSGTQSSLASMAAPSFSWPGSSQPQQLSSTPAPFPASSPTSASPFGEKK 1541
Query: 378 NTAVTQDDDMDEEAPETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMT 437
+ TQ+D+MDEEAPE + E ++ S GGFG STP GAPK NPFGGPFG NAT+ T
Sbjct: 1542 DIVDTQEDEMDEEAPEASQTTELSMGSFGGFGLGSTPNPGAPKTNPFGGPFG--NATTTT 1601
Query: 438 SSFTMASPPSGELFRPASFSFQSPLASQAASQPTNSVAFSGGFGSAMAT--QAPSQGGFG 497
S+ + PSGELF+PASF+FQ+P SQ A GFGS T Q P+Q GFG
Sbjct: 1602 SNPFNMTVPSGELFKPASFNFQNPQPSQPA-----------GFGSFSVTPSQTPAQSGFG 1661
Query: 498 QPAQIGVGQQALGNVLGSFGQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGS 557
QP+QIG GQQALG+VLGSFGQSRQ+G LPG GSP GF G +G +
Sbjct: 1662 QPSQIGGGQQALGSVLGSFGQSRQIGAGLPGATFGSPTGFGGSNPG---------SGLPN 1721
Query: 558 SVGSGGFAGVGSGGGGGFGGVGSGGGGFAGTVST-GGGFAGASSTTGGFAAAA----GGG 617
+ SGGFA GS GGF + S G GFAG ST GGFA +S +GGFA AA GGG
Sbjct: 1722 APASGGFAAAGSSATGGFAAMASAGRGFAGASSTPTGGFAALASGSGGFAGAAPGGGGGG 1781
Query: 618 F--VGAAGGGFAGAA----GGGFAGAA--GGFGAFG----SQQGSGGFSAFGAGGAGGTG 633
F +G+ GGF G A GGFAGAA GGFG FG Q G GGFSAFG G +G TG
Sbjct: 1782 FGGLGSGTGGFGGFAPQGSSGGFAGAAGGGGFGGFGGQAQGQAGGGGFSAFG-GNSGATG 1816
BLAST of Lsi04G007530 vs. TAIR 10
Match:
AT1G55540.2 (Nuclear pore complex protein )
HSP 1 Score: 188.0 bits (476), Expect = 2.4e-47
Identity = 249/671 (37.11%), Postives = 333/671 (49.63%), Query Frame = 0
Query: 18 SLQKANATVPSPLSVFQSSHEMLKKSNNEAFSVISENKFTEKSKASDFFSVTRSDSV--- 77
S+Q+ + T S S F+SS K FS +S + F S S+
Sbjct: 1185 SVQRLSTT--SSGSDFESS-----KGFGAQFSTMSSGAPASSFSSKSLFGFNSSSSIPGD 1244
Query: 78 ---------QKSNINLDQKSFIFT-----ISSKQTPTLKDSIDTSNSDNQKTANAKERHT 137
S LD S +FT +SS + SI S++ +T + T
Sbjct: 1245 KFTFPAVTAPLSGTPLDSTSTLFTASSAPVSSSSQDPVPASIPISSAPVPQTFSVTSTST 1304
Query: 138 TTSP----LFGSADKPESASVGTMSSLVPTVDEARKIEEKRSLTTISPSVPAPALARLNT 197
++ FG + + P+ +L +SPS P +++
Sbjct: 1305 VSATGFNVPFGKPLTSVKVDLNQAAPSTPSPSPGPTAGFTFNLPALSPSSP----EMVSS 1364
Query: 198 TSSSSTLFSGFA----VSKPLPSSAAVIDLNQPLSTSTQLNFSSPVVSISDSLFQAPKIV 257
++ S+LF A VS S+ + + + L +ST L+ S+P ++ D+ FQ+P++
Sbjct: 1365 STGQSSLFPPSAPTSQVSSDQASATSSLTDSSRLFSSTSLS-STPPITPPDA-FQSPQVS 1424
Query: 258 STSPTLSSLNPSLEPLKKEL---PILKSDDDTEKQTPASKPESYELKFQ-------PSVT 317
+ S + P EP K E IL + + A+K ++ L + +VT
Sbjct: 1425 TPSSAVPITEPVSEPKKPEAQSSSILSTQSTVDSVANATKTQNEPLPVKSEISNPGTTVT 1484
Query: 318 PADKNHVEP--TSKTQTVAKDVGGQVPNVIGNAQPQQPSVAFASPNLTSKIFANGRNEAS 377
P + +S TQ+ + + G++QPQQ S A +S A+ E
Sbjct: 1485 PVSSSGFLSGFSSGTQSSLASMAAPSFSWPGSSQPQQLSSTPAPFPASSPTSASPFGEKK 1544
Query: 378 NTAVTQDDDMDEEAPETNNNVEFNLSSLGGFGNSSTPMSGAPKPNPFGGPFGNVNATSMT 437
+ TQ+D+MDEEAPE + E ++ S GGFG STP GAPK NPFGGPFG NAT+ T
Sbjct: 1545 DIVDTQEDEMDEEAPEASQTTELSMGSFGGFGLGSTPNPGAPKTNPFGGPFG--NATTTT 1604
Query: 438 SSFTMASPPSGELFRPASFSFQSPLASQAASQPTNSVAFSGGFGSAMAT--QAPSQGGFG 497
S+ + PSGELF+PASF+FQ+P SQ A GFGS T Q P+Q GFG
Sbjct: 1605 SNPFNMTVPSGELFKPASFNFQNPQPSQPA-----------GFGSFSVTPSQTPAQSGFG 1664
Query: 498 QPAQIGVGQQALGNVLGSFGQSRQLGPSLPGTGTGSPGGFSGGFTSLKPVGVGGFAGAGS 557
QP+QIG GQQALG+VLGSFGQSRQ+G LPG GSP GF G +G +
Sbjct: 1665 QPSQIGGGQQALGSVLGSFGQSRQIGAGLPGATFGSPTGFGGSNPG---------SGLPN 1724
Query: 558 SVGSGGFAGVGSGGGGGFGGVGSGGGGFAGTVST-GGGFAGASSTTGGFAAAA----GGG 617
+ SGGFA GS GGF + S G GFAG ST GGFA +S +GGFA AA GGG
Sbjct: 1725 APASGGFAAAGSSATGGFAAMASAGRGFAGASSTPTGGFAALASGSGGFAGAAPGGGGGG 1784
Query: 618 F--VGAAGGGFAGAA----GGGFAGAA--GGFGAFG----SQQGSGGFSAFGAGGAGGTG 633
F +G+ GGF G A GGFAGAA GGFG FG Q G GGFSAFG G +G TG
Sbjct: 1785 FGGLGSGTGGFGGFAPQGSSGGFAGAAGGGGFGGFGGQAQGQAGGGGFSAFG-GNSGATG 1819
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
F4I1T7 | 3.4e-46 | 37.11 | Nuclear pore complex protein NUP214 OS=Arabidopsis thaliana OX=3702 GN=NUP214 PE... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3CWG0 | 3.1e-236 | 78.98 | Nuclear pore complex protein NUP214 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
A0A5A7SY34 | 3.1e-236 | 78.98 | Nuclear pore complex protein NUP214 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
A0A0A0KV45 | 7.6e-235 | 74.13 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G583270 PE=4 SV=1 | [more] |
A0A1S3BDU8 | 2.1e-229 | 77.55 | LOW QUALITY PROTEIN: nuclear pore complex protein NUP214 OS=Cucumis melo OX=3656... | [more] |
A0A6J1G030 | 4.2e-217 | 73.95 | nuclear pore complex protein NUP214 isoform X1 OS=Cucurbita moschata OX=3662 GN=... | [more] |
Match Name | E-value | Identity | Description | |
XP_038892124.1 | 1.7e-268 | 86.97 | nuclear pore complex protein NUP214 isoform X2 [Benincasa hispida] | [more] |
XP_038892123.1 | 1.7e-268 | 86.97 | nuclear pore complex protein NUP214 isoform X1 [Benincasa hispida] | [more] |
XP_031741375.1 | 2.8e-239 | 78.83 | nuclear pore complex protein NUP214 isoform X2 [Cucumis sativus] | [more] |
XP_031741374.1 | 2.8e-239 | 78.83 | nuclear pore complex protein NUP214 isoform X1 [Cucumis sativus] >KGN52214.2 hyp... | [more] |
TYK15805.1 | 6.4e-236 | 78.98 | nuclear pore complex protein NUP214 [Cucumis melo var. makuwa] | [more] |