Lsi04G007400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G007400
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionserine carboxypeptidase-like 13
Locationchr04: 6857777 .. 6857977 (+)
RNA-Seq ExpressionLsi04G007400
SyntenyLsi04G007400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTTCGCCACCGTCCTTTTCCGATCCTGTGTTTTCCTCCGCCTTCTTTTTGAGCTCTTCTCCGTCGCCGCCACCGCCACCGGAGGATCATACTCGAGGGTGAAATATCTGCCGGGATTCTCAGGACCTCTTCCCTTCGAACTAGAAACTGGGTTGGTTTTGTTATTGCAGCTTCCTCTTGATCTTGTGGATCTTTGA

mRNA sequence

ATGGGCTTCGCCACCGTCCTTTTCCGATCCTGTGTTTTCCTCCGCCTTCTTTTTGAGCTCTTCTCCGTCGCCGCCACCGCCACCGGAGGATCATACTCGAGGGTGAAATATCTGCCGGGATTCTCAGGACCTCTTCCCTTCGAACTAGAAACTGGGTTGGTTTTGTTATTGCAGCTTCCTCTTGATCTTGTGGATCTTTGA

Coding sequence (CDS)

ATGGGCTTCGCCACCGTCCTTTTCCGATCCTGTGTTTTCCTCCGCCTTCTTTTTGAGCTCTTCTCCGTCGCCGCCACCGCCACCGGAGGATCATACTCGAGGGTGAAATATCTGCCGGGATTCTCAGGACCTCTTCCCTTCGAACTAGAAACTGGGTTGGTTTTGTTATTGCAGCTTCCTCTTGATCTTGTGGATCTTTGA

Protein sequence

MGFATVLFRSCVFLRLLFELFSVAATATGGSYSRVKYLPGFSGPLPFELETGLVLLLQLPLDLVDL
Homology
[Close]
BLAST of Lsi04G007400 vs. ExPASy TrEMBL
Match: A0A6J1DYT8 (serine carboxypeptidase-like 13 OS=Momordica charantia OX=3673 GN=LOC111025862 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 4  ATVLFRSCVFLRLLFELFSVAATATG---GSYSRVKYLPGFSGPLPFELETGLV 55
          A ++FRS VF  LLF++FS  ATAT    GSY +VK+LPGFSGPLPF LETG V
Sbjct: 2  AAIVFRSSVFFLLLFKIFSATATATATAVGSYRKVKFLPGFSGPLPFVLETGYV 55

[Close]
BLAST of Lsi04G007400 vs. ExPASy TrEMBL
Match: A0A6J1E278 (serine carboxypeptidase-like 7 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025759 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-07
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 4  ATVLFRSCVFLRLLFELFSVAATATGGSYSRVKYLPGFSGPLPFELETGLV 55
          A VLFR  VF      LF V + A+GGSYSRVK+LPGFSGPLPF LETG V
Sbjct: 2  ANVLFRFSVF---SISLFQVLSAASGGSYSRVKFLPGFSGPLPFLLETGYV 49

[Close]
BLAST of Lsi04G007400 vs. ExPASy TrEMBL
Match: A0A6J1E3V1 (serine carboxypeptidase-like 7 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025759 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-07
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 4  ATVLFRSCVFLRLLFELFSVAATATGGSYSRVKYLPGFSGPLPFELETGLV 55
          A VLFR  VF      LF V + A+GGSYSRVK+LPGFSGPLPF LETG V
Sbjct: 2  ANVLFRFSVF---SISLFQVLSAASGGSYSRVKFLPGFSGPLPFLLETGYV 49

[Close]
BLAST of Lsi04G007400 vs. ExPASy TrEMBL
Match: A0A6J1E3Z3 (serine carboxypeptidase-like 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025866 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 1  MGFATVLFRSCVFLRLLFELF--SVAATATGGSYSRVKYLPGFSGPLPFELETGLV 55
          M   T+LFR  VFL L F++F  S AA A G SYS VK+LPG  GPLPF LETG V
Sbjct: 1  MASKTILFRFSVFLVLHFQVFSSSAAAAAAGSSYSTVKFLPGLPGPLPFVLETGYV 56

[Close]
BLAST of Lsi04G007400 vs. ExPASy TrEMBL
Match: A0A1S3BTS1 (serine carboxypeptidase-like 7 OS=Cucumis melo OX=3656 GN=LOC103493612 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.3e-06
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 4  ATVLFRSCVFLRLLFELFSVAATATGGSYSRVKYLPGFSGPLPFELETGLV 55
          AT+LFRS +FL LLF+L S +A   G S   VK+LPGFSGPLPFELETG V
Sbjct: 2  ATLLFRSAIFLLLLFQLPSSSA---GVSSWSVKHLPGFSGPLPFELETGYV 49

[Close]
BLAST of Lsi04G007400 vs. NCBI nr
Match: XP_038899455.1 (serine carboxypeptidase-like 13 isoform X2 [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 1  MGFATVLFRSCVFLRLLFELFSVAATATGGSYSRVKYLPGFSGPLPFELETGLV 55
          MGFATVLFR  VFL LL +LFS AA ATGGSYSRVKYLPGFSGPLPFELETG V
Sbjct: 1  MGFATVLFRCSVFLLLLVQLFS-AAAATGGSYSRVKYLPGFSGPLPFELETGYV 53

[Close]
BLAST of Lsi04G007400 vs. NCBI nr
Match: XP_038899457.1 (serine carboxypeptidase-like 7 [Benincasa hispida])

HSP 1 Score: 81.3 bits (199), Expect = 3.5e-12
Identity = 43/54 (79.63%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 1  MGFATVLFRSCVFLRLLFELFSVAATATGGSYSRVKYLPGFSGPLPFELETGLV 55
          M F+TVLFR  VFL LLF+LFS  A A GGSYSRVKYLPGFSGPLPFELETG V
Sbjct: 1  MEFSTVLFRCAVFLLLLFQLFS--AAAAGGSYSRVKYLPGFSGPLPFELETGYV 52

[Close]
BLAST of Lsi04G007400 vs. NCBI nr
Match: XP_022159443.1 (serine carboxypeptidase-like 13 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 4  ATVLFRSCVFLRLLFELFSVAATATG---GSYSRVKYLPGFSGPLPFELETGLV 55
          A ++FRS VF  LLF++FS  ATAT    GSY +VK+LPGFSGPLPF LETG V
Sbjct: 2  AAIVFRSSVFFLLLFKIFSATATATATAVGSYRKVKFLPGFSGPLPFVLETGYV 55

[Close]
BLAST of Lsi04G007400 vs. NCBI nr
Match: XP_022159369.1 (serine carboxypeptidase-like 7 isoform X1 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 4  ATVLFRSCVFLRLLFELFSVAATATGGSYSRVKYLPGFSGPLPFELETGLV 55
          A VLFR  VF      LF V + A+GGSYSRVK+LPGFSGPLPF LETG V
Sbjct: 2  ANVLFRFSVF---SISLFQVLSAASGGSYSRVKFLPGFSGPLPFLLETGYV 49

[Close]
BLAST of Lsi04G007400 vs. NCBI nr
Match: XP_022159416.1 (serine carboxypeptidase-like 7 isoform X2 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 0 

Query: 4  ATVLFRSCVFLRLLFELFSVAATATGGSYSRVKYLPGFSGPLPFELETGLV 55
          A VLFR  VF      LF V + A+GGSYSRVK+LPGFSGPLPF LETG V
Sbjct: 2  ANVLFRFSVF---SISLFQVLSAASGGSYSRVKFLPGFSGPLPFLLETGYV 49

[Close]
BLAST of Lsi04G007400 vs. TAIR 10
Match: AT2G22970.1 (serine carboxypeptidase-like 11 )

HSP 1 Score: 43.5 bits (101), Expect = 7.6e-05
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 30 GSYSRVKYLPGFSGPLPFELETGLV 55
          GS S VK+LPGF GPLPFELETG +
Sbjct: 20 GSGSIVKFLPGFEGPLPFELETGYI 44

[Close]
BLAST of Lsi04G007400 vs. TAIR 10
Match: AT2G22970.2 (serine carboxypeptidase-like 11 )

HSP 1 Score: 43.5 bits (101), Expect = 7.6e-05
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 30 GSYSRVKYLPGFSGPLPFELETGLV 55
          GS S VK+LPGF GPLPFELETG +
Sbjct: 20 GSGSIVKFLPGFEGPLPFELETGYI 44

[Close]
BLAST of Lsi04G007400 vs. TAIR 10
Match: AT2G22970.3 (serine carboxypeptidase-like 11 )

HSP 1 Score: 43.5 bits (101), Expect = 7.6e-05
Identity = 19/25 (76.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 30 GSYSRVKYLPGFSGPLPFELETGLV 55
          GS S VK+LPGF GPLPFELETG +
Sbjct: 20 GSGSIVKFLPGFEGPLPFELETGYI 44

[Close]
BLAST of Lsi04G007400 vs. TAIR 10
Match: AT3G12220.1 (serine carboxypeptidase-like 16 )

HSP 1 Score: 43.5 bits (101), Expect = 7.6e-05
Identity = 21/40 (52.50%), Postives = 25/40 (62.50%), Query Frame = 0 

Query: 15 RLLFELFSVAATATGGSYSRVKYLPGFSGPLPFELETGLV 55
          +LL     +  T    S S +KYLPGF GPLPFELETG +
Sbjct: 7  KLLLLQLVLLLTKHADSSSIIKYLPGFEGPLPFELETGYI 46

[Close]
BLAST of Lsi04G007400 vs. TAIR 10
Match: AT3G12230.1 (serine carboxypeptidase-like 14 )

HSP 1 Score: 43.5 bits (101), Expect = 7.6e-05
Identity = 21/40 (52.50%), Postives = 25/40 (62.50%), Query Frame = 0 

Query: 15 RLLFELFSVAATATGGSYSRVKYLPGFSGPLPFELETGLV 55
          +LL     +  T    S S +KYLPGF GPLPFELETG +
Sbjct: 7  KLLLLQLVLLLTKHADSSSIIKYLPGFEGPLPFELETGYI 46

The following BLAST results are available for this feature:
BLAST of Lsi04G007400 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G007400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DYT81.1e-0864.81serine carboxypeptidase-like 13 OS=Momordica charantia OX=3673 GN=LOC111025862 P... [more]
A0A6J1E2784.8e-0766.67serine carboxypeptidase-like 7 isoform X1 OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1E3V14.8e-0766.67serine carboxypeptidase-like 7 isoform X2 OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1E3Z31.8e-0660.71serine carboxypeptidase-like 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A1S3BTS15.3e-0666.67serine carboxypeptidase-like 7 OS=Cucumis melo OX=3656 GN=LOC103493612 PE=3 SV=1[more]
BLAST of Lsi04G007400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899455.11.1e-1385.19serine carboxypeptidase-like 13 isoform X2 [Benincasa hispida][more]
XP_038899457.13.5e-1279.63serine carboxypeptidase-like 7 [Benincasa hispida][more]
XP_022159443.12.4e-0864.81serine carboxypeptidase-like 13 [Momordica charantia][more]
XP_022159369.11.0e-0666.67serine carboxypeptidase-like 7 isoform X1 [Momordica charantia][more]
XP_022159416.11.0e-0666.67serine carboxypeptidase-like 7 isoform X2 [Momordica charantia][more]
BLAST of Lsi04G007400 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G22970.17.6e-0576.00serine carboxypeptidase-like 11 [more]
AT2G22970.27.6e-0576.00serine carboxypeptidase-like 11 [more]
AT2G22970.37.6e-0576.00serine carboxypeptidase-like 11 [more]
AT3G12220.17.6e-0552.50serine carboxypeptidase-like 16 [more]
AT3G12230.17.6e-0552.50serine carboxypeptidase-like 14 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G007400.1Lsi04G007400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0004180 carboxypeptidase activity