Lsi04G007390 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGGTCAGCTCAAAAGAAAATCAGAGGCTTTGGACTCTCATATTTCAAGGTACCTTTAGCTTTTGCATGCATTTTAATAAATAAATTAAGAGATTTTAGTTATTAATAATTTTTTTTCTTTTTTTTTTTGGTCTATGAGATTTCAATATGTGCAATTTTAATTCCTAAATTAATTTTGAGAGATGTGTTAGAAAAACTTCCCCACCTTACTAGAAAAACTTCCCCACCTTACTTTTTCGGTTTGTTTTAGTAAATTAAAGGCTTTTTTTTTATTTTTTTTTTTAAAAACTTGATTTTAACGCTAATGTGAAAAATTATATGAAAAAGTCCTAAAGGTTTAATATCTGTTTTGTTTGGGCTGTTTTCGAAAACACCAAAATAAACAAAAATATTTATAAATATAATAAAATGCCACGGACTATTATCATCTATCACTAATAGATAATGATAAACACAAATAGATGTCTATTAGTGTCTATCATTATTTATCATGATAGACGGTAGCATTTTGCTATATTTGTAAATAAAAAATTATTTAGCTACATCTCGGATAACACTTATCTTTGTGCATCCTACCAAATGTCCAATCATATAAGTGCATCTTAAGACGCACTAAGTATTGCCCTCTAAATATTTTCAGCAGTTCTTTTCATTTAAAATAATTATATATATATTTTTTTGTATTATTAATCATAATAAAATATTTTCCAAAAATCCATTAAGAATTGAATTTTTTTTTTGCTAAATTGTACTCATCTCGTACACCGGCGAGGACCCTTTTACACCGTCAGATTCGGCCGCCGGATTCCACTAACTCGGCGGCGGCTCAGTGATCAACTCAATTTATTATTTTTTTCCAAATATAAAGCTAATTAATTGAATCTCTGTCTGATTATTTATTCTTTATTAATTTTTCTCTAATTTATTATATACGCAGAGCAACAAAAACGACGCGCATAGCCTTTACTCCGTCCGTCATTAAATCCCTCCCAAATGATTTATTAATCGAAGTTCTTGCAAAAGTCGCAGCTTCTTCTTACACTGATTTAATCCAAGCAAAATTAGCCACCAAAGATTTTCTGGAAGCATCAAACGACGGCTACATATTTCGCCACGTGTCCCTTGGAAACTTCAGGAAGCTTCTATGGAACAACAGTCCAGAATTTTGGTCATTGATTGAAAATTGCAACAACAATAAAAATCCAGAGAGTTTATATCGCAAGGGAATGTTAGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAAGTGCTTATTTAAAATTATCTGCTGAAAAAGGGTATGTGGATGCTTGTTATGTTTATGGTATAATTATGTACGTAGCGAATTTAAAAGATGACGGACTAAAGTTTTTGAAAAAATGTGAGATAAAATCAGAGTATAAAATGGGGGAATGTCGTCGGAGAGTTAAGGAATTTGTTTGGTATCTTTGGGTTAAGAATAAGATTTCTTTGCCGGAAAACGATTCCGGTGATCGGAGATATAATTGTAGTAATATGAAAAATAATTGTATGATTAATGAGAGAAGAAATGGTTGGGATTGGAATGATGAAGATGATTTTTATGGAGAACACACGTGTGAAGAGTGTAAATGGAATGGTGAGGTTATGAGATTTTGTAATATGTTGAGAACAGGAGGTTATAGTAATTAA ATGGCCGAATTGAATTTTTTTTTTGCTAAATTGTACTCATCTCGTACACCGGCGAGGACCCTTTTACACCGTCAGATTCGGCCGCCGGATTCCACTAACTCGGCGGCGGCTCAAGCAACAAAAACGACGCGCATAGCCTTTACTCCGTCCGTCATTAAATCCCTCCCAAATGATTTATTAATCGAAGTTCTTGCAAAAGTCGCAGCTTCTTCTTACACTGATTTAATCCAAGCAAAATTAGCCACCAAAGATTTTCTGGAAGCATCAAACGACGGCTACATATTTCGCCACGTGTCCCTTGGAAACTTCAGGAAGCTTCTATGGAACAACAGTCCAGAATTTTGGTCATTGATTGAAAATTGCAACAACAATAAAAATCCAGAGAGTTTATATCGCAAGGGAATGTTAGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAAGTGCTTATTTAAAATTATCTGCTGAAAAAGGGTATGTGGATGCTTGTTATGTTTATGGTATAATTATGTACGTAGCGAATTTAAAAGATGACGGACTAAAGTTTTTGAAAAAATGTGAGATAAAATCAGAGTATAAAATGGGGGAATGTCGTCGGAGAGTTAAGGAATTTGTTTGGTATCTTTGGGTTAAGAATAAGATTTCTTTGCCGGAAAACGATTCCGGTGATCGGAGATATAATTGTAGTAATATGAAAAATAATTGTATGATTAATGAGAGAAGAAATGGTTGGGATTGGAATGATGAAGATGATTTTTATGGAGAACACACGTGTGAAGAGTGTAAATGGAATGGTGAGGTTATGAGATTTTGTAATATGTTGAGAACAGGAGGTTATAGTAATTAA ATGGCCGAATTGAATTTTTTTTTTGCTAAATTGTACTCATCTCGTACACCGGCGAGGACCCTTTTACACCGTCAGATTCGGCCGCCGGATTCCACTAACTCGGCGGCGGCTCAAGCAACAAAAACGACGCGCATAGCCTTTACTCCGTCCGTCATTAAATCCCTCCCAAATGATTTATTAATCGAAGTTCTTGCAAAAGTCGCAGCTTCTTCTTACACTGATTTAATCCAAGCAAAATTAGCCACCAAAGATTTTCTGGAAGCATCAAACGACGGCTACATATTTCGCCACGTGTCCCTTGGAAACTTCAGGAAGCTTCTATGGAACAACAGTCCAGAATTTTGGTCATTGATTGAAAATTGCAACAACAATAAAAATCCAGAGAGTTTATATCGCAAGGGAATGTTAGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAAGTGCTTATTTAAAATTATCTGCTGAAAAAGGGTATGTGGATGCTTGTTATGTTTATGGTATAATTATGTACGTAGCGAATTTAAAAGATGACGGACTAAAGTTTTTGAAAAAATGTGAGATAAAATCAGAGTATAAAATGGGGGAATGTCGTCGGAGAGTTAAGGAATTTGTTTGGTATCTTTGGGTTAAGAATAAGATTTCTTTGCCGGAAAACGATTCCGGTGATCGGAGATATAATTGTAGTAATATGAAAAATAATTGTATGATTAATGAGAGAAGAAATGGTTGGGATTGGAATGATGAAGATGATTTTTATGGAGAACACACGTGTGAAGAGTGTAAATGGAATGGTGAGGTTATGAGATTTTGTAATATGTTGAGAACAGGAGGTTATAGTAATTAA MAELNFFFAKLYSSRTPARTLLHRQIRPPDSTNSAAAQATKTTRIAFTPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFLEASNDGYIFRHVSLGNFRKLLWNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEASGSAYLKLSAEKGYVDACYVYGIIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVWYLWVKNKISLPENDSGDRRYNCSNMKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNGEVMRFCNMLRTGGYSN Homology
BLAST of Lsi04G007390 vs. ExPASy Swiss-Prot
Match: Q9FXC7 (Putative F-box protein At1g67623 OS=Arabidopsis thaliana OX=3702 GN=At1g67623 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 2.3e-15 Identity = 61/217 (28.11%), Postives = 105/217 (48.39%), Query Frame = 0
BLAST of Lsi04G007390 vs. ExPASy Swiss-Prot
Match: Q1PEW8 (F-box protein At2g35280 OS=Arabidopsis thaliana OX=3702 GN=At2g35280 PE=2 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 7.5e-06 Identity = 34/140 (24.29%), Postives = 72/140 (51.43%), Query Frame = 0
BLAST of Lsi04G007390 vs. ExPASy TrEMBL
Match: A0A6J1JRV1 (putative F-box protein At1g67623 OS=Cucurbita maxima OX=3661 GN=LOC111487244 PE=4 SV=1) HSP 1 Score: 364.8 bits (935), Expect = 3.3e-97 Identity = 175/254 (68.90%), Postives = 206/254 (81.10%), Query Frame = 0
BLAST of Lsi04G007390 vs. ExPASy TrEMBL
Match: A0A6J1JRX4 (putative F-box protein At1g67623 OS=Cucurbita maxima OX=3661 GN=LOC111487258 PE=4 SV=1) HSP 1 Score: 364.0 bits (933), Expect = 5.6e-97 Identity = 174/254 (68.50%), Postives = 206/254 (81.10%), Query Frame = 0
BLAST of Lsi04G007390 vs. ExPASy TrEMBL
Match: A0A6J1GYN4 (putative F-box protein At1g67623 OS=Cucurbita moschata OX=3662 GN=LOC111458702 PE=4 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 7.4e-97 Identity = 171/236 (72.46%), Postives = 196/236 (83.05%), Query Frame = 0
BLAST of Lsi04G007390 vs. ExPASy TrEMBL
Match: A0A6J1GZQ6 (F-box protein At2g35280-like OS=Cucurbita moschata OX=3662 GN=LOC111458703 PE=4 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 1.8e-95 Identity = 172/254 (67.72%), Postives = 202/254 (79.53%), Query Frame = 0
BLAST of Lsi04G007390 vs. ExPASy TrEMBL
Match: A0A0A0LS96 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025065 PE=4 SV=1) HSP 1 Score: 354.8 bits (909), Expect = 3.4e-94 Identity = 170/233 (72.96%), Postives = 196/233 (84.12%), Query Frame = 0
BLAST of Lsi04G007390 vs. NCBI nr
Match: XP_038891683.1 (putative F-box protein At1g67623 [Benincasa hispida]) HSP 1 Score: 407.5 bits (1046), Expect = 9.2e-110 Identity = 189/237 (79.75%), Postives = 209/237 (88.19%), Query Frame = 0
BLAST of Lsi04G007390 vs. NCBI nr
Match: XP_023549492.1 (putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 378.6 bits (971), Expect = 4.6e-101 Identity = 180/253 (71.15%), Postives = 208/253 (82.21%), Query Frame = 0
BLAST of Lsi04G007390 vs. NCBI nr
Match: KAG6601107.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 374.4 bits (960), Expect = 8.6e-100 Identity = 176/253 (69.57%), Postives = 206/253 (81.42%), Query Frame = 0
BLAST of Lsi04G007390 vs. NCBI nr
Match: KAG6601105.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 371.7 bits (953), Expect = 5.6e-99 Identity = 177/253 (69.96%), Postives = 203/253 (80.24%), Query Frame = 0
BLAST of Lsi04G007390 vs. NCBI nr
Match: XP_023549584.1 (putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 365.9 bits (938), Expect = 3.1e-97 Identity = 177/253 (69.96%), Postives = 204/253 (80.63%), Query Frame = 0
BLAST of Lsi04G007390 vs. TAIR 10
Match: AT1G67623.1 (F-box family protein ) HSP 1 Score: 84.3 bits (207), Expect = 1.7e-16 Identity = 61/217 (28.11%), Postives = 105/217 (48.39%), Query Frame = 0
BLAST of Lsi04G007390 vs. TAIR 10
Match: AT1G74875.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67623.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 73.6 bits (179), Expect = 2.9e-13 Identity = 59/228 (25.88%), Postives = 100/228 (43.86%), Query Frame = 0
BLAST of Lsi04G007390 vs. TAIR 10
Match: AT2G35280.1 (F-box family protein ) HSP 1 Score: 52.8 bits (125), Expect = 5.3e-07 Identity = 34/140 (24.29%), Postives = 72/140 (51.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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