Lsi04G007390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G007390
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box protein At2g35280-like
Locationchr04: 6852971 .. 6854644 (+)
RNA-Seq ExpressionLsi04G007390
SyntenyLsi04G007390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGTCAGCTCAAAAGAAAATCAGAGGCTTTGGACTCTCATATTTCAAGGTACCTTTAGCTTTTGCATGCATTTTAATAAATAAATTAAGAGATTTTAGTTATTAATAATTTTTTTTCTTTTTTTTTTTGGTCTATGAGATTTCAATATGTGCAATTTTAATTCCTAAATTAATTTTGAGAGATGTGTTAGAAAAACTTCCCCACCTTACTAGAAAAACTTCCCCACCTTACTTTTTCGGTTTGTTTTAGTAAATTAAAGGCTTTTTTTTTATTTTTTTTTTTAAAAACTTGATTTTAACGCTAATGTGAAAAATTATATGAAAAAGTCCTAAAGGTTTAATATCTGTTTTGTTTGGGCTGTTTTCGAAAACACCAAAATAAACAAAAATATTTATAAATATAATAAAATGCCACGGACTATTATCATCTATCACTAATAGATAATGATAAACACAAATAGATGTCTATTAGTGTCTATCATTATTTATCATGATAGACGGTAGCATTTTGCTATATTTGTAAATAAAAAATTATTTAGCTACATCTCGGATAACACTTATCTTTGTGCATCCTACCAAATGTCCAATCATATAAGTGCATCTTAAGACGCACTAAGTATTGCCCTCTAAATATTTTCAGCAGTTCTTTTCATTTAAAATAATTATATATATATTTTTTTGTATTATTAATCATAATAAAATATTTTCCAAAAATCCATTAAGAATTGAATTTTTTTTTTGCTAAATTGTACTCATCTCGTACACCGGCGAGGACCCTTTTACACCGTCAGATTCGGCCGCCGGATTCCACTAACTCGGCGGCGGCTCAGTGATCAACTCAATTTATTATTTTTTTCCAAATATAAAGCTAATTAATTGAATCTCTGTCTGATTATTTATTCTTTATTAATTTTTCTCTAATTTATTATATACGCAGAGCAACAAAAACGACGCGCATAGCCTTTACTCCGTCCGTCATTAAATCCCTCCCAAATGATTTATTAATCGAAGTTCTTGCAAAAGTCGCAGCTTCTTCTTACACTGATTTAATCCAAGCAAAATTAGCCACCAAAGATTTTCTGGAAGCATCAAACGACGGCTACATATTTCGCCACGTGTCCCTTGGAAACTTCAGGAAGCTTCTATGGAACAACAGTCCAGAATTTTGGTCATTGATTGAAAATTGCAACAACAATAAAAATCCAGAGAGTTTATATCGCAAGGGAATGTTAGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAAGTGCTTATTTAAAATTATCTGCTGAAAAAGGGTATGTGGATGCTTGTTATGTTTATGGTATAATTATGTACGTAGCGAATTTAAAAGATGACGGACTAAAGTTTTTGAAAAAATGTGAGATAAAATCAGAGTATAAAATGGGGGAATGTCGTCGGAGAGTTAAGGAATTTGTTTGGTATCTTTGGGTTAAGAATAAGATTTCTTTGCCGGAAAACGATTCCGGTGATCGGAGATATAATTGTAGTAATATGAAAAATAATTGTATGATTAATGAGAGAAGAAATGGTTGGGATTGGAATGATGAAGATGATTTTTATGGAGAACACACGTGTGAAGAGTGTAAATGGAATGGTGAGGTTATGAGATTTTGTAATATGTTGAGAACAGGAGGTTATAGTAATTAA

mRNA sequence

ATGGCCGAATTGAATTTTTTTTTTGCTAAATTGTACTCATCTCGTACACCGGCGAGGACCCTTTTACACCGTCAGATTCGGCCGCCGGATTCCACTAACTCGGCGGCGGCTCAAGCAACAAAAACGACGCGCATAGCCTTTACTCCGTCCGTCATTAAATCCCTCCCAAATGATTTATTAATCGAAGTTCTTGCAAAAGTCGCAGCTTCTTCTTACACTGATTTAATCCAAGCAAAATTAGCCACCAAAGATTTTCTGGAAGCATCAAACGACGGCTACATATTTCGCCACGTGTCCCTTGGAAACTTCAGGAAGCTTCTATGGAACAACAGTCCAGAATTTTGGTCATTGATTGAAAATTGCAACAACAATAAAAATCCAGAGAGTTTATATCGCAAGGGAATGTTAGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAAGTGCTTATTTAAAATTATCTGCTGAAAAAGGGTATGTGGATGCTTGTTATGTTTATGGTATAATTATGTACGTAGCGAATTTAAAAGATGACGGACTAAAGTTTTTGAAAAAATGTGAGATAAAATCAGAGTATAAAATGGGGGAATGTCGTCGGAGAGTTAAGGAATTTGTTTGGTATCTTTGGGTTAAGAATAAGATTTCTTTGCCGGAAAACGATTCCGGTGATCGGAGATATAATTGTAGTAATATGAAAAATAATTGTATGATTAATGAGAGAAGAAATGGTTGGGATTGGAATGATGAAGATGATTTTTATGGAGAACACACGTGTGAAGAGTGTAAATGGAATGGTGAGGTTATGAGATTTTGTAATATGTTGAGAACAGGAGGTTATAGTAATTAA

Coding sequence (CDS)

ATGGCCGAATTGAATTTTTTTTTTGCTAAATTGTACTCATCTCGTACACCGGCGAGGACCCTTTTACACCGTCAGATTCGGCCGCCGGATTCCACTAACTCGGCGGCGGCTCAAGCAACAAAAACGACGCGCATAGCCTTTACTCCGTCCGTCATTAAATCCCTCCCAAATGATTTATTAATCGAAGTTCTTGCAAAAGTCGCAGCTTCTTCTTACACTGATTTAATCCAAGCAAAATTAGCCACCAAAGATTTTCTGGAAGCATCAAACGACGGCTACATATTTCGCCACGTGTCCCTTGGAAACTTCAGGAAGCTTCTATGGAACAACAGTCCAGAATTTTGGTCATTGATTGAAAATTGCAACAACAATAAAAATCCAGAGAGTTTATATCGCAAGGGAATGTTAGAATTTTTCACTCATTGTAAAGAAGCTTCTGGAAGTGCTTATTTAAAATTATCTGCTGAAAAAGGGTATGTGGATGCTTGTTATGTTTATGGTATAATTATGTACGTAGCGAATTTAAAAGATGACGGACTAAAGTTTTTGAAAAAATGTGAGATAAAATCAGAGTATAAAATGGGGGAATGTCGTCGGAGAGTTAAGGAATTTGTTTGGTATCTTTGGGTTAAGAATAAGATTTCTTTGCCGGAAAACGATTCCGGTGATCGGAGATATAATTGTAGTAATATGAAAAATAATTGTATGATTAATGAGAGAAGAAATGGTTGGGATTGGAATGATGAAGATGATTTTTATGGAGAACACACGTGTGAAGAGTGTAAATGGAATGGTGAGGTTATGAGATTTTGTAATATGTTGAGAACAGGAGGTTATAGTAATTAA

Protein sequence

MAELNFFFAKLYSSRTPARTLLHRQIRPPDSTNSAAAQATKTTRIAFTPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFLEASNDGYIFRHVSLGNFRKLLWNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEASGSAYLKLSAEKGYVDACYVYGIIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVWYLWVKNKISLPENDSGDRRYNCSNMKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNGEVMRFCNMLRTGGYSN
Homology
BLAST of Lsi04G007390 vs. ExPASy Swiss-Prot
Match: Q9FXC7 (Putative F-box protein At1g67623 OS=Arabidopsis thaliana OX=3702 GN=At1g67623 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-15
Identity = 61/217 (28.11%), Postives = 105/217 (48.39%), Query Frame = 0

Query: 52  IKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFLEASNDGYIFRHVSLGNFRKLLWN-N 111
           + SLP DLL+E+ +   ASS + +   +L +K F    ++ Y+F  +SL     L W+ N
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHEN 83

Query: 112 SPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEASGSAYLKLSAEKGYVDACYVYGIIM 171
           S +F   IE C  ++NPE+L++KG + +F    +  G  YL  +AEKG  +A YVYG+I+
Sbjct: 84  SAKF---IERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVIL 143

Query: 172 YV--ANLKDDGLKFL----KKCEIKSEYKMGECRRRVKEFVWYLWVKNKISLPENDSGDR 231
                  K  G + L    K+    +  ++ E R ++++  +  W  +   + +  +   
Sbjct: 144 ICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVVEQLKTAYV 203

Query: 232 RYNCS-NMKNNCMINERRNGWD-WNDEDDFYGEHTCE 260
              C  + K   ++     GW  + DE D      CE
Sbjct: 204 SEKCKCDCKTRMLLLVMNRGWYLFGDETDLDFSSACE 237

BLAST of Lsi04G007390 vs. ExPASy Swiss-Prot
Match: Q1PEW8 (F-box protein At2g35280 OS=Arabidopsis thaliana OX=3702 GN=At2g35280 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.5e-06
Identity = 34/140 (24.29%), Postives = 72/140 (51.43%), Query Frame = 0

Query: 50  SVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFLEASNDGYIFRHVSLGNFRKLLWN 109
           S +++LP DLL E++AK+   S  D     L+ K+   ++ND  + + ++L    K    
Sbjct: 9   SRLEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPL- 68

Query: 110 NSPEFWSLIENCNNNKNPESLYRKGMLEFFT--HCKEASGSAYLKLSAEKGYVDACYVYG 169
           +  +   +++ C  N NP++ Y KG++ +F   HC       ++ ++A  G  +A Y+Y 
Sbjct: 69  SCRKHLLIMKKCLANNNPDAHYIKGIIWYFNLDHCD--VDLHHIGIAANGGQKEAIYMYA 128

Query: 170 IIMYVANLKDDGLKFLKKCE 188
           +++      ++G  ++ + E
Sbjct: 129 MLLLCRGRTEEGKTYMSQLE 145

BLAST of Lsi04G007390 vs. ExPASy TrEMBL
Match: A0A6J1JRV1 (putative F-box protein At1g67623 OS=Cucurbita maxima OX=3661 GN=LOC111487244 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 3.3e-97
Identity = 175/254 (68.90%), Postives = 206/254 (81.10%), Query Frame = 0

Query: 27  RPPDSTNSAAAQATKTTRIAFTPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFL 86
           R   S  S  ++ TKT R++ +P  I+SLPNDLLIE+LAKVAASSYTDL+QAKLATK FL
Sbjct: 7   RKSQSLGSHISRKTKTARLSASPPAIESLPNDLLIEILAKVAASSYTDLVQAKLATKKFL 66

Query: 87  EASNDGYIFRHVSLGNFRKLLWNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEAS 146
           EAS+  YIF+H SL NF KLLWNNS EFWS +E CNNN NPE+LYRKGMLEFFTHC+EAS
Sbjct: 67  EASSHNYIFQHASLENFHKLLWNNSTEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREAS 126

Query: 147 GSAYLKLSAEKGYVDACYVYGIIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVW 206
           G  YLK+SA+KGY +ACYVYGII+Y  +++D+G+KFLK CE K  +K+ ECRRRVKEFV 
Sbjct: 127 GMTYLKMSAQKGYSEACYVYGIILYATSMEDEGVKFLKICEEKLGFKLAECRRRVKEFVR 186

Query: 207 YLWVKNKISLPENDSGDRRYNCSN-MKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNG 266
           +LWVKNKIS+ E  S DRR  C N +KN C  N RR GWDWNDED++YGE+TCE CKWNG
Sbjct: 187 HLWVKNKISVQEKYSNDRR-GCENVIKNCCKKNVRRIGWDWNDEDNYYGENTCEACKWNG 246

Query: 267 EVMRFCNMLRTGGY 280
           EV+RFCNMLRTG Y
Sbjct: 247 EVLRFCNMLRTGSY 259

BLAST of Lsi04G007390 vs. ExPASy TrEMBL
Match: A0A6J1JRX4 (putative F-box protein At1g67623 OS=Cucurbita maxima OX=3661 GN=LOC111487258 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 5.6e-97
Identity = 174/254 (68.50%), Postives = 206/254 (81.10%), Query Frame = 0

Query: 27  RPPDSTNSAAAQATKTTRIAFTPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFL 86
           R   +  S  ++ TKT R++ +P  I+SLPNDLLIE+LAKVAASSYTDL+QAKLATK FL
Sbjct: 7   RKSQALGSQISRKTKTARLSASPPAIESLPNDLLIEILAKVAASSYTDLVQAKLATKKFL 66

Query: 87  EASNDGYIFRHVSLGNFRKLLWNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEAS 146
           EAS+  YIF+H SL NF KLLWNNS EFWS +E CNNN NPE+LYRKGMLEFFTHC+EAS
Sbjct: 67  EASSHNYIFQHASLENFHKLLWNNSTEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREAS 126

Query: 147 GSAYLKLSAEKGYVDACYVYGIIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVW 206
           G  YLK+SA+KGY +ACYVYGII+Y  +++D+G+KFLK CE K  +K+ ECRRRVKEFV 
Sbjct: 127 GMTYLKMSAQKGYSEACYVYGIILYATSMEDEGVKFLKICEEKLGFKLAECRRRVKEFVR 186

Query: 207 YLWVKNKISLPENDSGDRRYNCSN-MKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNG 266
           +LWVKNKIS+ E  S DRR  C N +KN C  N RR GWDWNDED++YGE+TCE CKWNG
Sbjct: 187 HLWVKNKISVQEKYSNDRR-GCENVIKNCCKKNVRRIGWDWNDEDNYYGENTCEACKWNG 246

Query: 267 EVMRFCNMLRTGGY 280
           EV+RFCNMLRTG Y
Sbjct: 247 EVLRFCNMLRTGSY 259

BLAST of Lsi04G007390 vs. ExPASy TrEMBL
Match: A0A6J1GYN4 (putative F-box protein At1g67623 OS=Cucurbita moschata OX=3662 GN=LOC111458702 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 7.4e-97
Identity = 171/236 (72.46%), Postives = 196/236 (83.05%), Query Frame = 0

Query: 44  RIAFTPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFLEASNDGYIFRHVSLGNF 103
           R + +P  I+SLPNDLLIEVLAKVAA SYTDL+ AKLATK FLEAS+  YIF+H SL NF
Sbjct: 3   RFSASPPPIESLPNDLLIEVLAKVAACSYTDLVHAKLATKKFLEASSHNYIFQHASLENF 62

Query: 104 RKLLWNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEASGSAYLKLSAEKGYVDAC 163
            KLLWNNS EFWS +E CNNN NPE+LYRKGMLEFFTHC+EASG AYLKLSA+KGY DAC
Sbjct: 63  HKLLWNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREASGMAYLKLSAQKGYPDAC 122

Query: 164 YVYGIIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVWYLWVKNKISLPENDSGD 223
           YVYGII+Y  +++D+G+KFLK CE K  +K+ +CR RVKEF++ LWVKNKI + ENDS D
Sbjct: 123 YVYGIILYAMSMEDEGVKFLKICEAKLGFKLAKCRGRVKEFIYCLWVKNKIYVLENDSSD 182

Query: 224 RRYNCSNMKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNGEVMRFCNMLRTGGY 280
           RR   S +KN C  N RRNGWDWNDEDD+YGEHTCE CKWNGEV+RFCNMLRTG Y
Sbjct: 183 RRGCESVIKNCCKKNVRRNGWDWNDEDDYYGEHTCEACKWNGEVLRFCNMLRTGSY 238

BLAST of Lsi04G007390 vs. ExPASy TrEMBL
Match: A0A6J1GZQ6 (F-box protein At2g35280-like OS=Cucurbita moschata OX=3662 GN=LOC111458703 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.8e-95
Identity = 172/254 (67.72%), Postives = 202/254 (79.53%), Query Frame = 0

Query: 27  RPPDSTNSAAAQATKTTRIAFTPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFL 86
           R   +  S  +   K  R + +P  I+SLPNDLLIEVLAKVAASS+TDL+ AKLATK FL
Sbjct: 7   RKSQALRSQISGTIKMARFSASPPPIESLPNDLLIEVLAKVAASSFTDLVHAKLATKKFL 66

Query: 87  EASNDGYIFRHVSLGNFRKLLWNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEAS 146
           EAS+  YIF+H SL NF KLLWNNS EFWS +E CNNN NPE+LYRKGMLEFFTHC+EAS
Sbjct: 67  EASSHNYIFQHASLENFHKLLWNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREAS 126

Query: 147 GSAYLKLSAEKGYVDACYVYGIIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVW 206
           G AYLKLSA+KGY DACYVYGII+Y  +++D+G+KFLK CE K  +K+ +CR RVKEF++
Sbjct: 127 GMAYLKLSAQKGYPDACYVYGIILYATSMEDEGVKFLKICEAKLGFKLAKCRGRVKEFIY 186

Query: 207 YLWVKNKISLPENDSGDRRYNCSNMKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNGE 266
           YLWVKNKI + ENDS +RR   S +KN C  N RR G DWNDEDD+YGEHTCE CKWNGE
Sbjct: 187 YLWVKNKIYVLENDSSNRRGCESVIKNCCRKNVRRIGCDWNDEDDYYGEHTCEACKWNGE 246

Query: 267 VMRFCNMLRTGGYS 281
           V+RFCNMLRTG Y+
Sbjct: 247 VLRFCNMLRTGSYN 260

BLAST of Lsi04G007390 vs. ExPASy TrEMBL
Match: A0A0A0LS96 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025065 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 3.4e-94
Identity = 170/233 (72.96%), Postives = 196/233 (84.12%), Query Frame = 0

Query: 48  TPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFLEASNDGYIFRHVSLGNFRKLL 107
           +P+VIKSLPNDLL EVLAKVA SSY DLIQAKLATK FLEASND YIF+HVSLGNFR LL
Sbjct: 30  SPTVIKSLPNDLLTEVLAKVATSSYIDLIQAKLATKHFLEASNDRYIFQHVSLGNFRNLL 89

Query: 108 WNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEASGSAYLKLSAEKGYVDACYVYG 167
           WNNSP+FWS +E CNN++NPESLYRKGMLEFFTHCKEASG AYLK SA+KGYVDACYV+G
Sbjct: 90  WNNSPKFWSFMETCNNSENPESLYRKGMLEFFTHCKEASGMAYLKRSAQKGYVDACYVFG 149

Query: 168 IIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVWYLWVKNKISLPENDSGDRRYN 227
           +I+Y +NLKD+GL+FLK  E+K   KM ECR+RVKEFV Y+W+KNKISL E DS   R  
Sbjct: 150 VILYASNLKDEGLEFLKNNEVKLGNKMIECRQRVKEFVSYIWIKNKISLSEGDSSYGRKC 209

Query: 228 CSNMKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNGEVMRFCNMLRTGGYS 281
             N+  NC +NE+ N WD  DEDD+YG++TCEECKWN EV+RFC MLRTG +S
Sbjct: 210 DKNI--NCRVNEKINVWDSKDEDDYYGKYTCEECKWNNEVLRFCKMLRTGRFS 260

BLAST of Lsi04G007390 vs. NCBI nr
Match: XP_038891683.1 (putative F-box protein At1g67623 [Benincasa hispida])

HSP 1 Score: 407.5 bits (1046), Expect = 9.2e-110
Identity = 189/237 (79.75%), Postives = 209/237 (88.19%), Query Frame = 0

Query: 44  RIAFTPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFLEASNDGYIFRHVSLGNF 103
           R+ F+PSVIKSLPNDLLIEVLAKVAASSYTDL+QAKLATKDFLE SN+GYIFRHVSLGNF
Sbjct: 2   RVTFSPSVIKSLPNDLLIEVLAKVAASSYTDLVQAKLATKDFLEVSNEGYIFRHVSLGNF 61

Query: 104 RKLLWNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEASGSAYLKLSAEKGYVDAC 163
            KLLWNNSPEFWSLIE CNNN+NPESLYRKGMLEFFTHC+EASG  YLK SAEK Y+DAC
Sbjct: 62  SKLLWNNSPEFWSLIETCNNNENPESLYRKGMLEFFTHCREASGLGYLKRSAEKDYMDAC 121

Query: 164 YVYGIIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVWYLWVKNKISLPENDSGD 223
           YVYG+++Y  NLK++GL+FL+ CE K   KM ECRRRVKEFVW LW+KNK+SL E + G 
Sbjct: 122 YVYGVVLYATNLKEEGLQFLRNCEAKLGNKMSECRRRVKEFVWCLWIKNKVSLSEKEFGG 181

Query: 224 RRYNCSN-MKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNGEVMRFCNMLRTGGY 280
           RRY CSN +KNNC+INE+RNGWDW DEDD YGEHTCEECKW GEV RFCNMLRTG Y
Sbjct: 182 RRY-CSNVIKNNCLINEKRNGWDWKDEDDHYGEHTCEECKWKGEVSRFCNMLRTGAY 237

BLAST of Lsi04G007390 vs. NCBI nr
Match: XP_023549492.1 (putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.6 bits (971), Expect = 4.6e-101
Identity = 180/253 (71.15%), Postives = 208/253 (82.21%), Query Frame = 0

Query: 27  RPPDSTNSAAAQATKTTRIAFTPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFL 86
           R   +  S  ++ TKT R++ +P  I+SLPNDLLIEVLAKVAASS+TDL+QAKLATK FL
Sbjct: 7   RKSQALGSQISRKTKTARLSASPPTIESLPNDLLIEVLAKVAASSFTDLVQAKLATKKFL 66

Query: 87  EASNDGYIFRHVSLGNFRKLLWNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEAS 146
           EASN  YIF+H SL NF+KLLWNNS EFWS +E CNNN NPE+LYRKGMLEFFTHC+EAS
Sbjct: 67  EASNHNYIFQHASLENFQKLLWNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREAS 126

Query: 147 GSAYLKLSAEKGYVDACYVYGIIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVW 206
           G  YLKLSA+KGY DACYVYGII+Y  +++D+G+KFLK CE K  +K+ ECRRRVKEFV 
Sbjct: 127 GMTYLKLSAQKGYPDACYVYGIILYTTSMEDEGVKFLKICEAKLGFKLVECRRRVKEFVR 186

Query: 207 YLWVKNKISLPENDSGDRRYNCSNMKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNGE 266
           YLWVKNKIS+P+ DS DRR   S +KN C  N RR GWDWNDEDD+YGEHTCE CKWNGE
Sbjct: 187 YLWVKNKISVPKKDSSDRRGCESVIKNCCKKNVRRIGWDWNDEDDYYGEHTCEACKWNGE 246

Query: 267 VMRFCNMLRTGGY 280
           V+RFCNMLRTG Y
Sbjct: 247 VLRFCNMLRTGSY 259

BLAST of Lsi04G007390 vs. NCBI nr
Match: KAG6601107.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 374.4 bits (960), Expect = 8.6e-100
Identity = 176/253 (69.57%), Postives = 206/253 (81.42%), Query Frame = 0

Query: 27  RPPDSTNSAAAQATKTTRIAFTPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFL 86
           R   + +S  ++  K  R + +P  I+SLPNDLLIE+LAKVAASS+TDL+ AKLATK FL
Sbjct: 7   RKSQALDSQTSETIKMARFSASPPPIESLPNDLLIEILAKVAASSFTDLVHAKLATKKFL 66

Query: 87  EASNDGYIFRHVSLGNFRKLLWNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEAS 146
           EAS+  YIF+H SL NF KLLWNNS EFWS +E CNNN NPE+LY+KGMLEFFTHC+EAS
Sbjct: 67  EASSHNYIFQHASLENFHKLLWNNSKEFWSFVEKCNNNGNPETLYQKGMLEFFTHCREAS 126

Query: 147 GSAYLKLSAEKGYVDACYVYGIIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVW 206
           G AYLKLSA+KGY DACYVYGII+Y  +++D+G+KFLK CE K  +K+ ECRRRVKEFV+
Sbjct: 127 GMAYLKLSAQKGYPDACYVYGIILYATSMEDEGVKFLKICEAKLGFKLAECRRRVKEFVY 186

Query: 207 YLWVKNKISLPENDSGDRRYNCSNMKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNGE 266
           YLWVKNKI + ENDS DRR   S +KN C  N RRNGWDWNDEDD+YGEHTCE CKWNGE
Sbjct: 187 YLWVKNKIYVLENDSSDRRGCESVIKNCCKKNVRRNGWDWNDEDDYYGEHTCEACKWNGE 246

Query: 267 VMRFCNMLRTGGY 280
           V+RFCNMLRTG Y
Sbjct: 247 VLRFCNMLRTGSY 259

BLAST of Lsi04G007390 vs. NCBI nr
Match: KAG6601105.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 371.7 bits (953), Expect = 5.6e-99
Identity = 177/253 (69.96%), Postives = 203/253 (80.24%), Query Frame = 0

Query: 27  RPPDSTNSAAAQATKTTRIAFTPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFL 86
           R   +  S  +   K  R + +P  I+SLPNDLLIEVLAKVAA S+TDL+ AKLATK FL
Sbjct: 7   RKSQALGSQISGTVKMARFSASPPPIESLPNDLLIEVLAKVAACSFTDLVHAKLATKKFL 66

Query: 87  EASNDGYIFRHVSLGNFRKLLWNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEAS 146
           EAS+  YIF+H SL NF KLLWNNS EFWS +E CNNN NPE+LYRKGMLEFFTHC+EAS
Sbjct: 67  EASSHNYIFQHASLENFHKLLWNNSKEFWSFMEKCNNNGNPETLYRKGMLEFFTHCREAS 126

Query: 147 GSAYLKLSAEKGYVDACYVYGIIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVW 206
           G AYLKLSA+KGY DACYVYGII+Y  +++D+G+KFLK CE K  +K+ ECRRRVKEFV+
Sbjct: 127 GMAYLKLSAQKGYPDACYVYGIILYATSMEDEGVKFLKICEAKLGFKLAECRRRVKEFVY 186

Query: 207 YLWVKNKISLPENDSGDRRYNCSNMKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNGE 266
           YLWVKNKI + ENDS DRR   S +KN C  N RRNGWDWNDEDD+YGEHTCE CKWNGE
Sbjct: 187 YLWVKNKIYVLENDSSDRRGCESVIKNCCKKNVRRNGWDWNDEDDYYGEHTCEACKWNGE 246

Query: 267 VMRFCNMLRTGGY 280
           V+RFCNMLRTG Y
Sbjct: 247 VLRFCNMLRTGSY 259

BLAST of Lsi04G007390 vs. NCBI nr
Match: XP_023549584.1 (putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.9 bits (938), Expect = 3.1e-97
Identity = 177/253 (69.96%), Postives = 204/253 (80.63%), Query Frame = 0

Query: 27  RPPDSTNSAAAQATKTTRIAFTPSVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFL 86
           R   + +S  ++ TK  R    P  I+SLPNDLLIEVLAKVAA S+TDL+QAKLATK+FL
Sbjct: 7   RKSQALDSQISRTTKMARFNDFPPTIESLPNDLLIEVLAKVAAFSFTDLVQAKLATKEFL 66

Query: 87  EASNDGYIFRHVSLGNFRKLLWNNSPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEAS 146
           EAS+ GYIF+H SL NF+KLLWNN+PEFWS +E CNNN NPE+LY KGMLEFFTHC+EAS
Sbjct: 67  EASSHGYIFQHASLRNFQKLLWNNNPEFWSFMEKCNNNGNPETLYHKGMLEFFTHCREAS 126

Query: 147 GSAYLKLSAEKGYVDACYVYGIIMYVANLKDDGLKFLKKCEIKSEYKMGECRRRVKEFVW 206
           G AYLKLSA+KGY +ACYVYGII+Y A+L+D+G+KFLK CE K  +K+ ECRRRVKEFV 
Sbjct: 127 GMAYLKLSAQKGYPEACYVYGIILYAASLEDEGVKFLKICEAKLGFKLAECRRRVKEFVR 186

Query: 207 YLWVKNKISLPENDSGDRRYNCSNMKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNGE 266
           YLWVKNKISLPE DS D+R   S +KN C  N RR GWD NDEDD+YGEH CE CKWN E
Sbjct: 187 YLWVKNKISLPEKDSSDQRGCESVVKNCCKKNVRRIGWDGNDEDDYYGEHMCEACKWNEE 246

Query: 267 VMRFCNMLRTGGY 280
           V RFCNMLRTG Y
Sbjct: 247 VSRFCNMLRTGSY 259

BLAST of Lsi04G007390 vs. TAIR 10
Match: AT1G67623.1 (F-box family protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-16
Identity = 61/217 (28.11%), Postives = 105/217 (48.39%), Query Frame = 0

Query: 52  IKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFLEASNDGYIFRHVSLGNFRKLLWN-N 111
           + SLP DLL+E+ +   ASS + +   +L +K F    ++ Y+F  +SL     L W+ N
Sbjct: 24  LDSLPEDLLVEISSCTGASSLSAVRNLRLVSKSFRRICDEKYVFYRLSLKEIEFLPWHEN 83

Query: 112 SPEFWSLIENCNNNKNPESLYRKGMLEFFTHCKEASGSAYLKLSAEKGYVDACYVYGIIM 171
           S +F   IE C  ++NPE+L++KG + +F    +  G  YL  +AEKG  +A YVYG+I+
Sbjct: 84  SAKF---IERCTESRNPEALFQKGFINYFRDKLQDRGLEYLAEAAEKGIKEAKYVYGVIL 143

Query: 172 YV--ANLKDDGLKFL----KKCEIKSEYKMGECRRRVKEFVWYLWVKNKISLPENDSGDR 231
                  K  G + L    K+    +  ++ E R ++++  +  W  +   + +  +   
Sbjct: 144 ICLGGKTKQKGFEILSSVIKQLMSTTMNELVEFRYKIQKIRYGFWWSDNTVVEQLKTAYV 203

Query: 232 RYNCS-NMKNNCMINERRNGWD-WNDEDDFYGEHTCE 260
              C  + K   ++     GW  + DE D      CE
Sbjct: 204 SEKCKCDCKTRMLLLVMNRGWYLFGDETDLDFSSACE 237

BLAST of Lsi04G007390 vs. TAIR 10
Match: AT1G74875.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67623.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-13
Identity = 59/228 (25.88%), Postives = 100/228 (43.86%), Query Frame = 0

Query: 57  NDLLIEVLAKVAASSYTDLIQAKLATKDFLEASNDGYIFRHVSLGNFRKLLWNNSPEFWS 116
           N   I ++  V +SS ++    +L +K F   SND YI + +SL     L W N  +F +
Sbjct: 17  NMFQIHLVINVLSSSLSEFRNLQLVSKSFKRISNDRYILQRLSLNKIPLLPWRNRKKFHN 76

Query: 117 LIENCNNNKNPESLYRKGMLEFF---THCKEAS-GSAYLKLSAEKGYVDACYVYGIIMYV 176
             + C  + N E++YRKG++++F   +H ++   G  ++  +A  G  +A YVYG+I+  
Sbjct: 77  FFKRCRKSGNLEAIYRKGLVDYFHRDSHERQRDRGLKHIAKTANNGNQEAQYVYGLILIC 136

Query: 177 --ANLKDDGLKFL----KKCEIKSEYKMGECRRRVKEFVWYLWVKNKISLPENDSGDRRY 236
                K +G K L    K   + +  K  E  R     +W+ W +  +   +        
Sbjct: 137 LGGKTKQNGFKILSSLRKPLMLSNTIKEMEKHRTHIRNMWW-WGEPMMRHLQKSYVRENC 196

Query: 237 NCSN----MKNNCMINERRNGWDWNDEDDFYGEHTCEECKWNGEVMRF 271
           NC        N C  +       + ++DD      CE C  + EV  F
Sbjct: 197 NCDGRTEIFPNYCFRHR------FGEDDDMLTSSACEICLCHHEVKLF 237

BLAST of Lsi04G007390 vs. TAIR 10
Match: AT2G35280.1 (F-box family protein )

HSP 1 Score: 52.8 bits (125), Expect = 5.3e-07
Identity = 34/140 (24.29%), Postives = 72/140 (51.43%), Query Frame = 0

Query: 50  SVIKSLPNDLLIEVLAKVAASSYTDLIQAKLATKDFLEASNDGYIFRHVSLGNFRKLLWN 109
           S +++LP DLL E++AK+   S  D     L+ K+   ++ND  + + ++L    K    
Sbjct: 9   SRLEALPQDLLREIVAKIGVKSAEDYHNCILSCKELGASANDERVLKTLNLALLVKKPL- 68

Query: 110 NSPEFWSLIENCNNNKNPESLYRKGMLEFFT--HCKEASGSAYLKLSAEKGYVDACYVYG 169
           +  +   +++ C  N NP++ Y KG++ +F   HC       ++ ++A  G  +A Y+Y 
Sbjct: 69  SCRKHLLIMKKCLANNNPDAHYIKGIIWYFNLDHCD--VDLHHIGIAANGGQKEAIYMYA 128

Query: 170 IIMYVANLKDDGLKFLKKCE 188
           +++      ++G  ++ + E
Sbjct: 129 MLLLCRGRTEEGKTYMSQLE 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FXC72.3e-1528.11Putative F-box protein At1g67623 OS=Arabidopsis thaliana OX=3702 GN=At1g67623 PE... [more]
Q1PEW87.5e-0624.29F-box protein At2g35280 OS=Arabidopsis thaliana OX=3702 GN=At2g35280 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1JRV13.3e-9768.90putative F-box protein At1g67623 OS=Cucurbita maxima OX=3661 GN=LOC111487244 PE=... [more]
A0A6J1JRX45.6e-9768.50putative F-box protein At1g67623 OS=Cucurbita maxima OX=3661 GN=LOC111487258 PE=... [more]
A0A6J1GYN47.4e-9772.46putative F-box protein At1g67623 OS=Cucurbita moschata OX=3662 GN=LOC111458702 P... [more]
A0A6J1GZQ61.8e-9567.72F-box protein At2g35280-like OS=Cucurbita moschata OX=3662 GN=LOC111458703 PE=4 ... [more]
A0A0A0LS963.4e-9472.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025065 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038891683.19.2e-11079.75putative F-box protein At1g67623 [Benincasa hispida][more]
XP_023549492.14.6e-10171.15putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo][more]
KAG6601107.18.6e-10069.57putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6601105.15.6e-9969.96putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023549584.13.1e-9769.96putative F-box protein At1g67623 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT1G67623.11.7e-1628.11F-box family protein [more]
AT1G74875.12.9e-1325.88FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G35280.15.3e-0724.29F-box family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040338Putative F-box protein At1g67623-likePANTHERPTHR33784OS05G0482100 PROTEINcoord: 51..275
NoneNo IPR availablePANTHERPTHR33784:SF31F-BOX PROTEINcoord: 51..275

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G007390.1Lsi04G007390.1mRNA