Lsi04G007050 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G007050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	cleavage and polyadenylation specificity factor subunit 3-I
Location	chr04: 6453020 .. 6456649 (+)
RNA-Seq Expression	Lsi04G007050
Synteny	Lsi04G007050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGTAAGATCGAAGCATGAATCCGGTTACTCACAGCTAGCTCATATTGTTATTGTCCATATTTAATTCAGTCTTCCCTTTTGTTCTCGATATCTTGTAGCTGGAGAGATCTTGTGTGAGCATTTCCCGTTTGAGGAAAAATGGCTTCGGTTGGACAGCCGCCCTCTCTTAAAAAACGGGAGGCATCCTCGACGAGAGAGGAGGATCAGCTTATTATAACTCCTCTTGGGGCTGGTAATGAAGTGGGTCGTTCCTGTGTATATATGTCTTACAAAGGCAAAATTGTGTTGGTATGCTTTGAACTCATCATTATTTCCCATTTAGTATCTGGGTATTATGTAATTGTGTAAGTGGTAATTTTTCTTGGATGATAGTTTGATTGTGGAATTCACCCTGCTTACTCTGGCATGGCTGCTTTGCCATACTTTGATGAGATTGACCCCTCAACAATTGATGTCCTGCTCATTACCCAGTATGTATTTCTTTCGTTATTGTTTCTTTTTAAAATATTTAGAAGATGCAGCTCTTAACTCGAACATTTGCATTTTGATGCTTTTTTTTACTTCTGCAAAATTAGTGAATGACGGTGGATGGCTATGTGCAGTTGCATTTGAGAATGGGTATAGGGTCTTGCCCCAAAAGATAAAAGTTTTTCCTTCCTGATCATATTCTCTCTGAACACAACGTGTTCTACATTTTGTTAAAACTTGTGTCTCCTTGTTAAAATCAATGGCTTTTTTAGCATGGAAAATGCAAATATTCACGAGAATGGCAGTTTTCCACTGTATCTCTCTTTATCTGCTCCTGACATGAGATTCTAATTGTCTCAGCTTTCTTTATTTTCTGTCACTTTTTTCTTTTTGTGTTCTTTTAACTAAGATAATTTTATGCACACTTATTCGCAGCTTTCATTTGGATCATGCCGCATCACTCCCTTATTTCTTGGAGAAGGTACTTTCTAATTGAATTGCGATGTGATTTTTGTTTGAGTGCAGAAACTAATTTAGCATTAATATGATAGACTACATTCAAAGGACGAGTCTTTATGACTTATGCCACTAAAGCGATCTACAAGTTGTTGCTGTCAGATTTTGTGAAAGTGAGCAAAGTTTCTGTTGAAGACATGTTGTACGATGAGCAGGACATAAATCGTTCCATGGACAAAATTGAGGTAAATGATTTCTCATAATGGATGTCTCTTGAGTCTTGACTTGATGTTTCATCCATGGTGAAAATTATGGTTCAGATTTCTTCTTTATAAGAAGTTTTAGTGATTGAAAATTCATGCCTTATTATAATAATCTGCTCGACGTTTTATTTGGAAACAGTTTATGAAATTTATTTTTCTACCGCACTATCTATCATCTGTCGCTCTCTGCCCTTAGCGCCTTCTGCTGTATTTCTTTGTTAATCTTCTCCATTAAAATGTTTGAAATTCAGTTCTTAAAATTTTCAGAACCAAATATAATAGAACTACAAGTGGTCTTTTGTTGTATTCATGCATTTTTCTCTGATTTTTTGAAATTAGCTGTTTTATAAAGTATAATTTGATTTGAATGTTATACTTATAAAATTAACATGTATAAGAAAAAGAAACAAATAGAAACAGAACAATAGAAATACCCTTCCACGCAGTTGAAGTTATAAAAACAATTAAAATGCAAAATAGATCTTAAAACAATTTTTGGAAAAAGACAACCTATGCAGTCCTCAAGTTTACTAAATGATTCCCGAGAAGCTTCTTTCTTTCTTTTTGAAATGATCCCAAGAAGCTTCTTATTGAAGGATAAAATAAAATAAAAAAGATATCTGTATGATAATTTTGTAAATCCTCGAGATATTAATGATAATGAGCAATCTATACTGGAGTGCAGATTCATTATATTGATTTTATTGTTGTCAACTTGCGTAGGTTTCATCTCCATGTGTCCTGATTTGCAATGATGAAAATGGACATCAATTATTCTCTTATTTAATAATAGTGCACAGTAATTGCAGGTCATTGATTTCCATCAAACAGTAGAAGTAAATGGTATTCGGTTTTGGTGTTACACTGCTGGTCATGTGCTTGGTGCTGCCATGTTTATGGTAGATATTGCTGGTGTCCGAGTCCTCTACACTGGAGACTATTCACGTGAAGAAGATCGGCATCTTCGAGCTGCCGAGATGCCTCAGTTTTCTCCTGATGTTTGCATAATTGAATCTACATACGGTGTCCAGCTCCATCAACCTCGAAATATTCGAGAGAAGCGCTTCACTGATGTTGTTCATTCAACCATTTCTCAAGGTGGTCGTGTGCTGATTCCAGCTTTTGCCCTTGGACGTGCCCAGGAACTCCTCCTTATTCTTGATGAGTATTGGGCAAACCATCCCGAGCTCCATAATATTCCTATATACTATGCTTCTCCTCTGGCAAAAAGATGTTTGACTGTATATGAGACATACACGCTCTCCATGAATGATAGGATCCAAAATGCTAAATCAAATCCCTTTAGATTCAAGTACATATCCCCACTAAAAAGCATTGAAGTTTTTAAGGATGTTGGCCCATCAGTGGTGATGGCCAGCCCTGGTGGACTTCAAAGCGGTTTGTCGCGACAACTCTTTGACATGTGGTGTTCTGATAAGAAAAATTCATGTGTGCTTCCTGGTTATGTTGTTGAAGGGACACTGGCTAAGACCATAATCAATGAACCAAAGGAAGTCACCCTCATGAGTGGACTCATGGCTCCTCTCAACATGCAGGTTCATTACATTTCTTTCTCTGCCCATGCTGACTTTGCGCAGACCAGCGCATTCTTGGAAGAGCTCATGCCGCCCAACATAATTCTCGTCCATGGAGAAGCTAATGAGATGGGGAGGCTCAAACAGAAGCTTATGTCTCAGTTTGCTGATCGGAATACAAAGATTCTTACTCCAAAGAATTGTCAGTCTGTTGAAATGTATTTCAACTCTCAGAAGATGGCAAAAACTATTGGAAAATTGGCTGAGAAGACTCCAGAAGTCGGCGAAACTGTCAGCGGTTTACTGGTTAAGAAAGGATTTGCATATCAAATAATGGCACCAGAGGATCTACACATCTTCTCTCAGCTATCAACTGCAAACATCAACCAACGCATCACAATCCCATACTCCAACGCCTTTAATGTAATTGTACGTAGACTCAAACAGGTATACGAGAGTGTAGAATCTTTAACAGACGAAGAATCTAGTGTTCCAATGATTTGTGTGCACGATCGAGTGACAGTAAAGCATGAATCAGAGAGACACGTCTCACTTCACTGGACATCCGATCCATTAAGCGACATGGTGTCAGATTCCGTCGTAGCTCTCATTCTCAACATCAACCGCGAGGTTCCGAAAGTCATCGTGGAATCAGAGGCTGTAAAAACAGAAGAAGAGAACGAAAAGAAAGCAGAGAAGGTAATCCATGCCCTCCTTGTTTCACTCTTTGGCGATGTGAAGTTAGGAGAAAATGGGAAGCTGGTGATCAACGTTGATGGGAATATAGCAGAGCTTGATAAACAAAGTGGTGAAGTAGAAAGTGAAAATGAAGCTCTCAAAGAAAGAGTTAAGACAGCATTCCAACGAATTCAATGTGCTGTAAAACCAATTCCTCTTTCTGCATCT

mRNA sequence

ATTGTAAGATCGAAGCATGAATCCGGTTACTCACAGCTAGCTCATATTCCGCCCTCTCTTAAAAAACGGGAGGCATCCTCGACGAGAGAGGAGGATCAGCTTATTATAACTCCTCTTGGGGCTGGTAATGAAGTGGGTCGTTCCTGTGTATATATGTCTTACAAAGGCAAAATTGTGTTGGTATGCTTTGAACTCATCATTATTTCCCATTTAGTATCTGGGTATTATTTTGATTGTGGAATTCACCCTGCTTACTCTGGCATGGCTGCTTTGCCATACTTTGATGAGATTGACCCCTCAACAATTGATGTCCTGCTCATTACCCAGTATATAATTTTATGCACACTTATTCGCAGCTTTCATTTGGATCATGCCGCATCACTCCCTTATTTCTTGGAGAAGACTACATTCAAAGGACGAGTCTTTATGACTTATGCCACTAAAGCGATCTACAAGTTGTTGCTGTCAGATTTTGTGAAAGTGAGCAAAGTTTCTGTTGAAGACATGTTGTACGATGAGCAGGACATAAATCGTTCCATGGACAAAATTGAGGTCATTGATTTCCATCAAACAGTAGAAGTAAATGGTATTCGGTTTTGGTGTTACACTGCTGGTCATGTGCTTGGTGCTGCCATGTTTATGGTAGATATTGCTGGTGTCCGAGTCCTCTACACTGGAGACTATTCACGTGAAGAAGATCGGCATCTTCGAGCTGCCGAGATGCCTCAGTTTTCTCCTGATGTTTGCATAATTGAATCTACATACGGTGTCCAGCTCCATCAACCTCGAAATATTCGAGAGAAGCGCTTCACTGATGTTGTTCATTCAACCATTTCTCAAGGTGGTCGTGTGCTGATTCCAGCTTTTGCCCTTGGACGTGCCCAGGAACTCCTCCTTATTCTTGATGAGTATTGGGCAAACCATCCCGAGCTCCATAATATTCCTATATACTATGCTTCTCCTCTGGCAAAAAGATGTTTGACTGTATATGAGACATACACGCTCTCCATGAATGATAGGATCCAAAATGCTAAATCAAATCCCTTTAGATTCAAGTACATATCCCCACTAAAAAGCATTGAAGTTTTTAAGGATGTTGGCCCATCAGTGGTGATGGCCAGCCCTGGTGGACTTCAAAGCGGTTTGTCGCGACAACTCTTTGACATGTGGTGTTCTGATAAGAAAAATTCATGTGTGCTTCCTGGTTATGTTGTTGAAGGGACACTGGCTAAGACCATAATCAATGAACCAAAGGAAGTCACCCTCATGAGTGGACTCATGGCTCCTCTCAACATGCAGGTTCATTACATTTCTTTCTCTGCCCATGCTGACTTTGCGCAGACCAGCGCATTCTTGGAAGAGCTCATGCCGCCCAACATAATTCTCGTCCATGGAGAAGCTAATGAGATGGGGAGGCTCAAACAGAAGCTTATGTCTCAGTTTGCTGATCGGAATACAAAGATTCTTACTCCAAAGAATTGTCAGTCTGTTGAAATGTATTTCAACTCTCAGAAGATGGCAAAAACTATTGGAAAATTGGCTGAGAAGACTCCAGAAGTCGGCGAAACTGTCAGCGGTTTACTGGTTAAGAAAGGATTTGCATATCAAATAATGGCACCAGAGGATCTACACATCTTCTCTCAGCTATCAACTGCAAACATCAACCAACGCATCACAATCCCATACTCCAACGCCTTTAATGTAATTGTACGTAGACTCAAACAGGTATACGAGAGTGTAGAATCTTTAACAGACGAAGAATCTAGTGTTCCAATGATTTGTGTGCACGATCGAGTGACAGTAAAGCATGAATCAGAGAGACACGTCTCACTTCACTGGACATCCGATCCATTAAGCGACATGGTGTCAGATTCCGTCGTAGCTCTCATTCTCAACATCAACCGCGAGGTTCCGAAAGTCATCGTGGAATCAGAGGCTGTAAAAACAGAAGAAGAGAACGAAAAGAAAGCAGAGAAGGTAATCCATGCCCTCCTTGTTTCACTCTTTGGCGATGTGAAGTTAGGAGAAAATGGGAAGCTGGTGATCAACGTTGATGGGAATATAGCAGAGCTTGATAAACAAAGTGGTGAAGTAGAAAGTGAAAATGAAGCTCTCAAAGAAAGAGTTAAGACAGCATTCCAACGAATTCAATGTGCTGTAAAACCAATTCCTCTTTCTGCATCT

Coding sequence (CDS)

ATTGTAAGATCGAAGCATGAATCCGGTTACTCACAGCTAGCTCATATTCCGCCCTCTCTTAAAAAACGGGAGGCATCCTCGACGAGAGAGGAGGATCAGCTTATTATAACTCCTCTTGGGGCTGGTAATGAAGTGGGTCGTTCCTGTGTATATATGTCTTACAAAGGCAAAATTGTGTTGGTATGCTTTGAACTCATCATTATTTCCCATTTAGTATCTGGGTATTATTTTGATTGTGGAATTCACCCTGCTTACTCTGGCATGGCTGCTTTGCCATACTTTGATGAGATTGACCCCTCAACAATTGATGTCCTGCTCATTACCCAGTATATAATTTTATGCACACTTATTCGCAGCTTTCATTTGGATCATGCCGCATCACTCCCTTATTTCTTGGAGAAGACTACATTCAAAGGACGAGTCTTTATGACTTATGCCACTAAAGCGATCTACAAGTTGTTGCTGTCAGATTTTGTGAAAGTGAGCAAAGTTTCTGTTGAAGACATGTTGTACGATGAGCAGGACATAAATCGTTCCATGGACAAAATTGAGGTCATTGATTTCCATCAAACAGTAGAAGTAAATGGTATTCGGTTTTGGTGTTACACTGCTGGTCATGTGCTTGGTGCTGCCATGTTTATGGTAGATATTGCTGGTGTCCGAGTCCTCTACACTGGAGACTATTCACGTGAAGAAGATCGGCATCTTCGAGCTGCCGAGATGCCTCAGTTTTCTCCTGATGTTTGCATAATTGAATCTACATACGGTGTCCAGCTCCATCAACCTCGAAATATTCGAGAGAAGCGCTTCACTGATGTTGTTCATTCAACCATTTCTCAAGGTGGTCGTGTGCTGATTCCAGCTTTTGCCCTTGGACGTGCCCAGGAACTCCTCCTTATTCTTGATGAGTATTGGGCAAACCATCCCGAGCTCCATAATATTCCTATATACTATGCTTCTCCTCTGGCAAAAAGATGTTTGACTGTATATGAGACATACACGCTCTCCATGAATGATAGGATCCAAAATGCTAAATCAAATCCCTTTAGATTCAAGTACATATCCCCACTAAAAAGCATTGAAGTTTTTAAGGATGTTGGCCCATCAGTGGTGATGGCCAGCCCTGGTGGACTTCAAAGCGGTTTGTCGCGACAACTCTTTGACATGTGGTGTTCTGATAAGAAAAATTCATGTGTGCTTCCTGGTTATGTTGTTGAAGGGACACTGGCTAAGACCATAATCAATGAACCAAAGGAAGTCACCCTCATGAGTGGACTCATGGCTCCTCTCAACATGCAGGTTCATTACATTTCTTTCTCTGCCCATGCTGACTTTGCGCAGACCAGCGCATTCTTGGAAGAGCTCATGCCGCCCAACATAATTCTCGTCCATGGAGAAGCTAATGAGATGGGGAGGCTCAAACAGAAGCTTATGTCTCAGTTTGCTGATCGGAATACAAAGATTCTTACTCCAAAGAATTGTCAGTCTGTTGAAATGTATTTCAACTCTCAGAAGATGGCAAAAACTATTGGAAAATTGGCTGAGAAGACTCCAGAAGTCGGCGAAACTGTCAGCGGTTTACTGGTTAAGAAAGGATTTGCATATCAAATAATGGCACCAGAGGATCTACACATCTTCTCTCAGCTATCAACTGCAAACATCAACCAACGCATCACAATCCCATACTCCAACGCCTTTAATGTAATTGTACGTAGACTCAAACAGGTATACGAGAGTGTAGAATCTTTAACAGACGAAGAATCTAGTGTTCCAATGATTTGTGTGCACGATCGAGTGACAGTAAAGCATGAATCAGAGAGACACGTCTCACTTCACTGGACATCCGATCCATTAAGCGACATGGTGTCAGATTCCGTCGTAGCTCTCATTCTCAACATCAACCGCGAGGTTCCGAAAGTCATCGTGGAATCAGAGGCTGTAAAAACAGAAGAAGAGAACGAAAAGAAAGCAGAGAAGGTAATCCATGCCCTCCTTGTTTCACTCTTTGGCGATGTGAAGTTAGGAGAAAATGGGAAGCTGGTGATCAACGTTGATGGGAATATAGCAGAGCTTGATAAACAAAGTGGTGAAGTAGAAAGTGAAAATGAAGCTCTCAAAGAAAGAGTTAAGACAGCATTCCAACGAATTCAATGTGCTGTAAAACCAATTCCTCTTTCTGCATCT

Protein sequence

IVRSKHESGYSQLAHIPPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYYFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQRITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSDPLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGENGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS

Homology

[Close]

BLAST of Lsi04G007050 vs. ExPASy Swiss-Prot
Match: Q9C952 (Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thaliana OX=3702 GN=CPSF73-I PE=1 SV=1)

HSP 1 Score: 1130.9 bits (2924), Expect = 0.0e+00
Identity = 562/719 (78.16%), Postives = 641/719 (89.15%), Query Frame = 0


Query: 13  LAHIPPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLV 72
           +A    SLK+RE   +R+ DQLI+TPLGAG+EVGRSCVYMS++GK +L            
Sbjct: 1   MASSSTSLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNIL------------ 60

Query: 73  SGYYFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFL 132
               FDCGIHPAYSGMAALPYFDEIDPS+IDVLLIT           FH+DHAASLPYFL
Sbjct: 61  ----FDCGIHPAYSGMAALPYFDEIDPSSIDVLLITH----------FHIDHAASLPYFL 120

Query: 133 EKTTFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTV 192
           EKTTF GRVFMT+ATKAIYKLLL+D+VKVSKVSVEDML+DEQDIN+SMDKIEVIDFHQTV
Sbjct: 121 EKTTFNGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTV 180

Query: 193 EVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIE 252
           EVNGI+FWCYTAGHVLGAAMFMVDIAGVR+LYTGDYSREEDRHLRAAE+PQFSPD+CIIE
Sbjct: 181 EVNGIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIE 240

Query: 253 STYGVQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELH 312
           ST GVQLHQ R+IREKRFTDV+HST++QGGRVLIPAFALGRAQELLLILDEYWANHP+LH
Sbjct: 241 STSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLH 300

Query: 313 NIPIYYASPLAKRCLTVYETYTLSMNDRIQN--AKSNPFRFKYISPLKSIEVFKDVGPSV 372
           NIPIYYASPLAK+C+ VY+TY LSMNDRI+N  A SNPF FK+ISPL SI+ F DVGPSV
Sbjct: 301 NIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSV 360

Query: 373 VMASPGGLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPL 432
           VMA+PGGLQSGLSRQLFD WCSDKKN+C++PGY+VEGTLAKTIINEPKEVTLM+GL APL
Sbjct: 361 VMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPL 420

Query: 433 NMQVHYISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILT 492
           NMQVHYISFSAHAD+AQTS FL+ELMPPNIILVHGEANEM RLKQKL+++F D NTKI+T
Sbjct: 421 NMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMT 480

Query: 493 PKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLS 552
           PKNC+SVEMYFNS+K+AKTIG+LAEKTP+VG+TVSG+LVKKGF YQIMAP++LH+FSQLS
Sbjct: 481 PKNCESVEMYFNSEKLAKTIGRLAEKTPDVGDTVSGILVKKGFTYQIMAPDELHVFSQLS 540

Query: 553 TANINQRITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVS 612
           TA + QRITIP+  AF VI  RL++++ESVE  TDEES +P + VH+RVTVK ESE+H+S
Sbjct: 541 TATVTQRITIPFVGAFGVIKHRLEKIFESVEFSTDEESGLPALKVHERVTVKQESEKHIS 600

Query: 613 LHWTSDPLSDMVSDSVVALILNINREVPKVIVESE-AVKTEEENEKKAEKVIHALLVSLF 672
           L W+SDP+SDMVSDS+VALILNI+REVPK+++E E AVK+EEEN KK EKVI+ALLVSLF
Sbjct: 601 LQWSSDPISDMVSDSIVALILNISREVPKIVMEEEDAVKSEEENGKKVEKVIYALLVSLF 660

Query: 673 GDVKLGENGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS 729
           GDVKLGENGKLVI VDGN+A+LDK+SGEVESE+  LKERV+ AF+RIQ AVKPIPLSAS
Sbjct: 661 GDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERVRVAFERIQSAVKPIPLSAS 693

[Close]

BLAST of Lsi04G007050 vs. ExPASy Swiss-Prot
Match: Q9UKF6 (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens OX=9606 GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 686.8 bits (1771), Expect = 2.7e-196
Identity = 359/713 (50.35%), Postives = 486/713 (68.16%), Query Frame = 0


Query: 25  ASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYYFDCGIHPA 84
           A    E DQL+I PLGAG EVGRSC+ + +KG+ +++                DCGIHP 
Sbjct: 3   AIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIML----------------DCGIHPG 62

Query: 85  YSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTTFKGRVFMT 144
             GM ALPY D IDP+ ID+LLI+           FHLDH  +LP+FL+KT+FKGR FMT
Sbjct: 63  LEGMDALPYIDLIDPAEIDLLLISH----------FHLDHCGALPWFLQKTSFKGRTFMT 122

Query: 145 YATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTA 204
           +ATKAIY+ LLSD+VKVS +S +DMLY E D+  SMDKIE I+FH+  EV GI+FWCY A
Sbjct: 123 HATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHA 182

Query: 205 GHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRN 264
           GHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PD+ IIESTYG  +H+ R 
Sbjct: 183 GHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKRE 242

Query: 265 IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAK 324
            RE RF + VH  +++GGR LIP FALGRAQELLLILDEYW NHPELH+IPIYYAS LAK
Sbjct: 243 EREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAK 302

Query: 325 RCLTVYETYTLSMNDRI--QNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGGLQSGL 384
           +C+ VY+TY  +MND+I  Q   +NPF FK+IS LKS++ F D+GPSVVMASPG +QSGL
Sbjct: 303 KCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGL 362

Query: 385 SRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYISFSAH 444
           SR+LF+ WC+DK+N  ++ GY VEGTLAK I++EP+E+T MSG   PL M V YISFSAH
Sbjct: 363 SRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAH 422

Query: 445 ADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADR---NTKILTPKNCQSVEM 504
            D+ QTS F+  L PP++ILVHGE NEM RLK  L+ ++ D    + ++  P+N ++V +
Sbjct: 423 TDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 482

Query: 505 YFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQRIT 564
            F  +K+AK +G LA+K PE G+ VSG+LVK+ F Y I++P DL  ++ L+ + + Q   
Sbjct: 483 NFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQA 542

Query: 565 IPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSDPLS 624
           IPY+  FN++  +L+++   VE L  +E   P + V   +TV  E    V L W ++P +
Sbjct: 543 IPYTGPFNLLCYQLQKLTGDVEELEIQEK--PALKVFKNITVIQEPGM-VVLEWLANPSN 602

Query: 625 DMVSDSVVALILNI--NREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGD--VKLG 684
           DM +D+V  +IL +  N ++ K  V+  + K E     K    +  +L  +FG+  V + 
Sbjct: 603 DMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKR---LEIMLQDIFGEDCVSVK 662

Query: 685 ENGKLVINVDGNIAELDKQSGEVESE-----NEALKERVKTAFQRIQCAVKPI 724
           ++  L + VDG  A L+ ++  VE E     +E+L+E V+ A QR+  A+ P+
Sbjct: 663 DDSILSVTVDGKTANLNLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 683

[Close]

BLAST of Lsi04G007050 vs. ExPASy Swiss-Prot
Match: P79101 (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus OX=9913 GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 685.6 bits (1768), Expect = 5.9e-196
Identity = 358/713 (50.21%), Postives = 485/713 (68.02%), Query Frame = 0


Query: 25  ASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYYFDCGIHPA 84
           A    E DQL+I PLGAG EVGRSC+ + +KG+ +++                DCGIHP 
Sbjct: 3   AIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIML----------------DCGIHPG 62

Query: 85  YSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTTFKGRVFMT 144
             GM ALPY D IDP+ ID+LLI+           FHLDH  +LP+FL+KT+FKGR FMT
Sbjct: 63  LEGMDALPYIDLIDPAEIDLLLISH----------FHLDHCGALPWFLQKTSFKGRTFMT 122

Query: 145 YATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTA 204
           +ATKAIY+ LLSD+VKVS +S +DMLY E D+  SMDKIE I+FH+  EV GI+FWCY A
Sbjct: 123 HATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHA 182

Query: 205 GHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRN 264
           GHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PD+ IIESTYG  +H+ R 
Sbjct: 183 GHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKRE 242

Query: 265 IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAK 324
            RE RF + VH  +++GGR LIP FALGRAQELLLILDEYW NHPELH+IPIYYAS LAK
Sbjct: 243 EREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAK 302

Query: 325 RCLTVYETYTLSMNDRI--QNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGGLQSGL 384
           +C+ VY+TY  +MND+I  Q   +NPF FK+IS LKS++ F D+GPSVVMASPG +QSGL
Sbjct: 303 KCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGL 362

Query: 385 SRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYISFSAH 444
           SR+LF+ WC+DK+N  ++ GY VEGTLAK I++EP+E+T MSG   PL M V YISFSAH
Sbjct: 363 SRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAH 422

Query: 445 ADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADR---NTKILTPKNCQSVEM 504
            D+ QTS F+  L PP++ILVHGE NEM RLK  L+ ++ D    + ++  P+N ++V +
Sbjct: 423 TDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 482

Query: 505 YFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQRIT 564
            F  +K+AK +G LA+K PE G+ VSG+LVK+ F Y I++P DL  ++ L+ + + Q   
Sbjct: 483 NFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQA 542

Query: 565 IPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSDPLS 624
           IPY+  FN++  +L+++   VE L  +E   P + V   +TV  E    V L W ++P +
Sbjct: 543 IPYTGPFNLLYYQLQKLTGDVEELEIQEK--PALKVFKNITVIQEPGM-VVLEWLANPSN 602

Query: 625 DMVSDSVVALILNI--NREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGD--VKLG 684
           DM +D+V  +IL +  N ++ K  V+  + K E     K    +  +L  +FG+  V + 
Sbjct: 603 DMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKR---LEIMLQDIFGEDCVSVK 662

Query: 685 ENGKLVINVDGNIAELDKQSGEVESE-----NEALKERVKTAFQRIQCAVKPI 724
           +   L + VDG  A ++ ++  VE E     +E+L+E V+ A QR+  A+ P+
Sbjct: 663 DGSILSVTVDGKTANINLETRTVECEEGSEDDESLREMVELAAQRLYEALTPV 683

[Close]

BLAST of Lsi04G007050 vs. ExPASy Swiss-Prot
Match: Q9QXK7 (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus OX=10090 GN=Cpsf3 PE=1 SV=2)

HSP 1 Score: 682.6 bits (1760), Expect = 5.0e-195
Identity = 356/713 (49.93%), Postives = 485/713 (68.02%), Query Frame = 0


Query: 25  ASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYYFDCGIHPA 84
           A    E DQL+I PLGAG EVGRSC+ + +KG+ +++                DCGIHP 
Sbjct: 3   AIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIML----------------DCGIHPG 62

Query: 85  YSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTTFKGRVFMT 144
             GM ALPY D IDP+ ID+LLI+           FHLDH  +LP+FL+KT+FKGR FMT
Sbjct: 63  LEGMDALPYIDLIDPAEIDLLLISH----------FHLDHCGALPWFLQKTSFKGRTFMT 122

Query: 145 YATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTA 204
           +ATKAIY+ LLSD+VKVS +S +DMLY E D+  SMDKIE I+FH+  EV GI+FWCY A
Sbjct: 123 HATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHA 182

Query: 205 GHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRN 264
           GHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P   PD+ IIESTYG  +H+ R 
Sbjct: 183 GHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKRE 242

Query: 265 IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAK 324
            RE RF + VH  +++GGR LIP FALGRAQELLLILDEYW NHPELH+IPIYYAS LAK
Sbjct: 243 EREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAK 302

Query: 325 RCLTVYETYTLSMNDRI--QNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGGLQSGL 384
           +C+ VY+TY  +MND+I  Q   +NPF FK+IS LKS++ F D+GPSVVMASPG +Q+GL
Sbjct: 303 KCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGL 362

Query: 385 SRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYISFSAH 444
           SR+LF+ WC+DK+N  ++ GY VEGTLAK I++EP+E+T MSG   PL M V YISFSAH
Sbjct: 363 SRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAH 422

Query: 445 ADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADR---NTKILTPKNCQSVEM 504
            D+ QTS F+  L PP++ILVHGE NEM RLK  L+ ++ D    + ++  P+N ++V +
Sbjct: 423 TDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 482

Query: 505 YFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQRIT 564
            F  +K+AK +G LA+K PE G+ VSG+LVK+ F Y I++P DL  ++ L+ + + Q   
Sbjct: 483 NFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQA 542

Query: 565 IPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSDPLS 624
           IPY+  F ++  +L+++   VE L  +E   P + V   +TV  E    V L W ++P +
Sbjct: 543 IPYTGPFYLLYYQLQKLTGDVEELEIQEK--PALKVFKSITVVQEPGM-VVLEWLANPSN 602

Query: 625 DMVSDSVVALILNI--NREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGD--VKLG 684
           DM +D+V  +IL +  N ++ K  V+  + K E     K    +  +L  +FG+  V + 
Sbjct: 603 DMYADTVTTVILEVQSNPKIRKGAVQKVSKKLEMHVYSKR---LEVMLQDIFGEDCVSVK 662

Query: 685 ENGKLVINVDGNIAELDKQSGEVESE-----NEALKERVKTAFQRIQCAVKPI 724
           ++  L + VDG  A ++ ++  VE E     +E+L+E V+ A QR+  A+ P+
Sbjct: 663 DDSVLSVTVDGKTANINLETRAVECEEGSEDDESLREMVELAAQRLYEALTPV 683

[Close]

BLAST of Lsi04G007050 vs. ExPASy Swiss-Prot
Match: Q86A79 (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum OX=44689 GN=cpsf3 PE=3 SV=1)

HSP 1 Score: 661.4 bits (1705), Expect = 1.2e-188
Identity = 346/761 (45.47%), Postives = 493/761 (64.78%), Query Frame = 0


Query: 15  HIPPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSG 74
           H    LK+     T ++D L ITP+G+G+EVGRSCV + YKGK V+              
Sbjct: 17  HHNQHLKRPLKGGTEDDDILEITPIGSGSEVGRSCVLLKYKGKKVM-------------- 76

Query: 75  YYFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEK 134
             FDCG+HPAYSG+ +LP+FD I+    D+ L+        L+  FHLDHAA++PYF+ K
Sbjct: 77  --FDCGVHPAYSGLVSLPFFDSIESDIPDIDLL--------LVSHFHLDHAAAVPYFVGK 136

Query: 135 TTFKGRVFMTYATKAIYKLLLSDFVKVSKVS-VEDMLYDEQDINRSMDKIEVIDFHQTVE 194
           T FKGRVFMT+ TKAIY +LLSD+VKVS ++  +DML+D+ D++RS++KIE + + Q VE
Sbjct: 137 TKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDRSLEKIEKVRYRQKVE 196

Query: 195 VNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIES 254
            NGI+  C+ AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL  AE P    DV IIES
Sbjct: 197 HNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIES 256

Query: 255 TYGVQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHN 314
           TYGVQ+H+PR  REKRFT  VH  + + G+ LIP FALGRAQELLLILDEYW  +P+LH+
Sbjct: 257 TYGVQVHEPRLEREKRFTSSVHQVVERNGKCLIPVFALGRAQELLLILDEYWIANPQLHH 316

Query: 315 IPIYYASPLAKRCLTVYETYTLSMNDRI--QNAKSNPFRFKYISPLKSIEVFKDVGPSVV 374
           +PIYYAS LAK+C+ VY TY   MNDR+  Q   SNPF FK+I  +K IE F D GP V 
Sbjct: 317 VPIYYASALAKKCMGVYRTYINMMNDRVRAQFDVSNPFEFKHIKNIKGIESFDDRGPCVF 376

Query: 375 MASPGGLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLN 434
           MASPG LQSGLSRQLF+ WCSDK+N  V+PGY VEGTLAK I++EP E+T +  +  PLN
Sbjct: 377 MASPGMLQSGLSRQLFERWCSDKRNGIVIPGYSVEGTLAKHIMSEPAEITRLDNVNVPLN 436

Query: 435 MQVHYISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTP 494
           + V Y+SFSAH+DF QTS F++E+ PP+++LVHG+ANEM RL+Q L+++F  +   +LTP
Sbjct: 437 LTVSYVSFSAHSDFLQTSEFIQEIQPPHVVLVHGDANEMSRLRQSLVAKF--KTINVLTP 496

Query: 495 KNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLST 554
           KN  SV + F  +K+AKT+G +    P+  + + G+LV K F + I++  D+H ++ L T
Sbjct: 497 KNAMSVALEFRPEKVAKTLGSIITNPPKQNDIIQGILVTKDFTHHILSASDIHNYTNLKT 556

Query: 555 ANINQRITIPYSNAFNVIVRRLKQVY----ESVESLTDEESSVPMICVHDRVTVKHESER 614
             I Q++T+P++  +++++  L+Q+Y    ES ES     +  P I +++ + + +    
Sbjct: 557 NIIKQKLTLPFAQTYHILISTLEQIYEQIIESTESTGGGGNEKPTITIYNEIKLIYNIGV 616

Query: 615 HVSLHWTSDPLSDMVSDSVVALILNI-------------------NREVPKVIVESEAVK 674
            + L W S+ ++DM+ DS++ALI  I                     E+ K  +E E  K
Sbjct: 617 SIILEWNSNTVNDMICDSIIALISQIELNPLSIKVRNPNFNNIDEKEEITKDDIEKEKEK 676

Query: 675 TEEENE---------------KKAEKV---------IHALLVSLFGDVKLGENGKLVI-- 724
            +E+ +               +K+ K+         +  LL   +G+ K+ EN  L++  
Sbjct: 677 EKEQQDGDDDDDDEIQIKVVSRKSRKLSNKLNTITEVKLLLEQQYGNFKVDENDPLILHF 736

[Close]

BLAST of Lsi04G007050 vs. ExPASy TrEMBL
Match: A0A6J1DE61 (cleavage and polyadenylation specificity factor subunit 3-I OS=Momordica charantia OX=3673 GN=LOC111019708 PE=4 SV=1)

HSP 1 Score: 1309.7 bits (3388), Expect = 0.0e+00
Identity = 668/712 (93.82%), Postives = 679/712 (95.37%), Query Frame = 0


Query: 17  PPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYY 76
           PPSLKKRE+S+TREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL                
Sbjct: 7   PPSLKKRESSATREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL---------------- 66

Query: 77  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTT 136
           FDCGIHPAYSGMAALPYFDEIDPSTIDVLLIT           FHLDHAASLPYFLEKTT
Sbjct: 67  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITH----------FHLDHAASLPYFLEKTT 126

Query: 137 FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG 196
           FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG
Sbjct: 127 FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG 186

Query: 197 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 256
           IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG
Sbjct: 187 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 246

Query: 257 VQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI 316
           VQLHQPR+IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI
Sbjct: 247 VQLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI 306

Query: 317 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 376
           YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG
Sbjct: 307 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 366

Query: 377 GLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY 436
           GLQSGLSRQLFDMWCSDKKN+CVLPGYVVEGTLAKTIINEPKEVTLM+GLMAPLNMQVHY
Sbjct: 367 GLQSGLSRQLFDMWCSDKKNACVLPGYVVEGTLAKTIINEPKEVTLMNGLMAPLNMQVHY 426

Query: 437 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS 496
           ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKL+SQFADRNTKILTPKNCQS
Sbjct: 427 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLISQFADRNTKILTPKNCQS 486

Query: 497 VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ 556
           VEMYFNSQKMAKTIG+LAEKTPE GETVSGLLVKKGFAYQIMA +DLHIFSQLSTANINQ
Sbjct: 487 VEMYFNSQKMAKTIGRLAEKTPEAGETVSGLLVKKGFAYQIMASDDLHIFSQLSTANINQ 546

Query: 557 RITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSD 616
           RITIPYSNAFNVIVRRLKQVYESVESLTDEES VP ICVHDRVTVKHESE+HVSLHWTSD
Sbjct: 547 RITIPYSNAFNVIVRRLKQVYESVESLTDEESGVPAICVHDRVTVKHESEKHVSLHWTSD 606

Query: 617 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGE 676
           PLSDMVSDSVVALILNINREVPKVIVESEA KTEEENEKKAEKVIHALLVSLFGDVKLGE
Sbjct: 607 PLSDMVSDSVVALILNINREVPKVIVESEAAKTEEENEKKAEKVIHALLVSLFGDVKLGE 666

Query: 677 NGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS 729
           NGKLVINVDG+IAELDKQSGEVESENE LKERVKTAF+RIQCAVKPIPLSAS
Sbjct: 667 NGKLVINVDGSIAELDKQSGEVESENEGLKERVKTAFRRIQCAVKPIPLSAS 692

[Close]

BLAST of Lsi04G007050 vs. ExPASy TrEMBL
Match: A0A6J1HTF4 (cleavage and polyadenylation specificity factor subunit 3-I-like OS=Cucurbita maxima OX=3661 GN=LOC111466435 PE=4 SV=1)

HSP 1 Score: 1297.0 bits (3355), Expect = 0.0e+00
Identity = 659/710 (92.82%), Postives = 676/710 (95.21%), Query Frame = 0


Query: 18  PSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYYF 77
           PSLKKRE+S+TREEDQLI+TPLGAGNEVGRSCVYMSYKGKIVL                F
Sbjct: 8   PSLKKRESSATREEDQLIVTPLGAGNEVGRSCVYMSYKGKIVL----------------F 67

Query: 78  DCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTTF 137
           DCGIHPAYSGMAALPYFDEIDPSTIDVLL+T           FHLDHAASLPYFLEKTTF
Sbjct: 68  DCGIHPAYSGMAALPYFDEIDPSTIDVLLVTH----------FHLDHAASLPYFLEKTTF 127

Query: 138 KGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGI 197
           KGRVFMTYATKAIYKLLLSDFVKVSKVS+EDMLYDEQDINRSMDKIEVIDFHQTVEVNGI
Sbjct: 128 KGRVFMTYATKAIYKLLLSDFVKVSKVSIEDMLYDEQDINRSMDKIEVIDFHQTVEVNGI 187

Query: 198 RFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGV 257
           RFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGV
Sbjct: 188 RFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGV 247

Query: 258 QLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIY 317
           QLHQPR+IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHN+PIY
Sbjct: 248 QLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNVPIY 307

Query: 318 YASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGG 377
           YASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGG
Sbjct: 308 YASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGG 367

Query: 378 LQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYI 437
           LQSGLSRQLFD+WCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYI
Sbjct: 368 LQSGLSRQLFDLWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYI 427

Query: 438 SFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQSV 497
           SFSAHAD+AQTSAFLEELMPPNIILVHGEANEMGRLKQKLMS+FADRNTKILTPKNCQSV
Sbjct: 428 SFSAHADYAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSKFADRNTKILTPKNCQSV 487

Query: 498 EMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQR 557
           EMYFNSQKMAKTIGKLAE TPEV ETVSGLLVKKGFAYQIMAP+DLHIFSQLSTANI QR
Sbjct: 488 EMYFNSQKMAKTIGKLAENTPEVDETVSGLLVKKGFAYQIMAPDDLHIFSQLSTANIYQR 547

Query: 558 ITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSDP 617
           ITIPY+NAFNVIVRRLKQVYESVES TDEES VP +CVHDRVTVKHESERHVSLHWTSDP
Sbjct: 548 ITIPYTNAFNVIVRRLKQVYESVESSTDEESGVPTVCVHDRVTVKHESERHVSLHWTSDP 607

Query: 618 LSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGEN 677
           LSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGEN
Sbjct: 608 LSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGEN 667

Query: 678 GKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSA 728
           GKLV+NVDG+IAE+DKQSGEVESENEALKERVKTAF+RIQ AVKPIPLSA
Sbjct: 668 GKLVVNVDGSIAEVDKQSGEVESENEALKERVKTAFRRIQSAVKPIPLSA 691

[Close]

BLAST of Lsi04G007050 vs. ExPASy TrEMBL
Match: A0A6J1G1N4 (cleavage and polyadenylation specificity factor subunit 3-I-like OS=Cucurbita moschata OX=3662 GN=LOC111449842 PE=4 SV=1)

HSP 1 Score: 1293.1 bits (3345), Expect = 0.0e+00
Identity = 660/710 (92.96%), Postives = 675/710 (95.07%), Query Frame = 0


Query: 18  PSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYYF 77
           PSLKKRE+S+TREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL                F
Sbjct: 8   PSLKKRESSATREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL----------------F 67

Query: 78  DCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTTF 137
           DCGIHPAYSGMAALPYFDEIDPSTIDVLLIT           FHLDHAASLPYFLEKTTF
Sbjct: 68  DCGIHPAYSGMAALPYFDEIDPSTIDVLLITH----------FHLDHAASLPYFLEKTTF 127

Query: 138 KGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGI 197
           KGRVFMTYATKAIYKLLLSDFVKVSKVS+EDMLYDEQDINRSMDKIEVIDFHQTVEVNGI
Sbjct: 128 KGRVFMTYATKAIYKLLLSDFVKVSKVSIEDMLYDEQDINRSMDKIEVIDFHQTVEVNGI 187

Query: 198 RFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGV 257
           RFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGV
Sbjct: 188 RFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGV 247

Query: 258 QLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIY 317
           QLHQPR+IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHN+PIY
Sbjct: 248 QLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNVPIY 307

Query: 318 YASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGG 377
           YASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGG
Sbjct: 308 YASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGG 367

Query: 378 LQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYI 437
           LQSGLSRQLFD+WCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYI
Sbjct: 368 LQSGLSRQLFDLWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYI 427

Query: 438 SFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQSV 497
           SFSAHAD+AQTSAFLEELMPPNIILVHGEANEMGRLKQKLMS+FADRNTKILTPKNCQSV
Sbjct: 428 SFSAHADYAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSKFADRNTKILTPKNCQSV 487

Query: 498 EMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQR 557
           EMYFNSQKMAKTIGKLAE TPEV ETVSGLLVKKGFAYQIMAP+DLHIFSQLSTANI QR
Sbjct: 488 EMYFNSQKMAKTIGKLAENTPEVDETVSGLLVKKGFAYQIMAPDDLHIFSQLSTANIYQR 547

Query: 558 ITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSDP 617
           ITIPY+NAFNVIVRRLKQVYESVES TDEES VP + VHDRVTVKHESERHVSLHWTSDP
Sbjct: 548 ITIPYTNAFNVIVRRLKQVYESVESSTDEESGVPTVRVHDRVTVKHESERHVSLHWTSDP 607

Query: 618 LSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGEN 677
           LSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGEN
Sbjct: 608 LSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGEN 667

Query: 678 GKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSA 728
           GKLV+NVDG+IAE+DKQSGEVESENEALKERVKTAF+RIQ AVKPIPLSA
Sbjct: 668 GKLVVNVDGSIAEVDKQSGEVESENEALKERVKTAFRRIQSAVKPIPLSA 691

[Close]

BLAST of Lsi04G007050 vs. ExPASy TrEMBL
Match: A0A6J1GZU7 (cleavage and polyadenylation specificity factor subunit 3-I-like OS=Cucurbita moschata OX=3662 GN=LOC111458343 PE=4 SV=1)

HSP 1 Score: 1289.6 bits (3336), Expect = 0.0e+00
Identity = 656/711 (92.26%), Postives = 674/711 (94.80%), Query Frame = 0


Query: 17  PPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYY 76
           PPS KKRE S+TREED+LI+TPLGAGNEVGRSCVYMSYKGK+VL                
Sbjct: 7   PPSFKKRELSATREEDKLIVTPLGAGNEVGRSCVYMSYKGKVVL---------------- 66

Query: 77  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTT 136
           FDCGIHPAYSGMAALPYFDEIDPSTIDVLLIT           FHLDHAASLPYFLEKTT
Sbjct: 67  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITH----------FHLDHAASLPYFLEKTT 126

Query: 137 FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG 196
           FKGRVFMTYATKAIYKLLLSDFVKVSKVS+EDML+DEQDINRSMDKIEVIDFHQTVEVNG
Sbjct: 127 FKGRVFMTYATKAIYKLLLSDFVKVSKVSIEDMLFDEQDINRSMDKIEVIDFHQTVEVNG 186

Query: 197 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 256
           IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG
Sbjct: 187 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 246

Query: 257 VQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI 316
           VQLHQPR+IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHP+LHN+PI
Sbjct: 247 VQLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNVPI 306

Query: 317 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 376
           YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG
Sbjct: 307 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 366

Query: 377 GLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY 436
           GLQSGLSRQLFD+WCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGL APLNMQVHY
Sbjct: 367 GLQSGLSRQLFDLWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLTAPLNMQVHY 426

Query: 437 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS 496
           ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKL+SQF+DRNTKILTPKNCQS
Sbjct: 427 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLISQFSDRNTKILTPKNCQS 486

Query: 497 VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ 556
           VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFA+QIMAP+DLHIFSQLSTANINQ
Sbjct: 487 VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAHQIMAPDDLHIFSQLSTANINQ 546

Query: 557 RITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSD 616
           RITIPYSNAFNVIVRRLKQVYESVES TDEES VP I VHDRVTVKHESERH+SLHWTSD
Sbjct: 547 RITIPYSNAFNVIVRRLKQVYESVESSTDEESGVPTIRVHDRVTVKHESERHISLHWTSD 606

Query: 617 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGE 676
           PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFG+VKLG 
Sbjct: 607 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGNVKLGG 666

Query: 677 NGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSA 728
           NGKLVINVDG+IAELDKQSGEVESENE LKERVKTAF+RIQCAVKPIP SA
Sbjct: 667 NGKLVINVDGSIAELDKQSGEVESENEVLKERVKTAFRRIQCAVKPIPPSA 691

[Close]

BLAST of Lsi04G007050 vs. ExPASy TrEMBL
Match: A0A6J1KE99 (cleavage and polyadenylation specificity factor subunit 3-I-like OS=Cucurbita maxima OX=3661 GN=LOC111492433 PE=4 SV=1)

HSP 1 Score: 1287.3 bits (3330), Expect = 0.0e+00
Identity = 655/712 (91.99%), Postives = 673/712 (94.52%), Query Frame = 0


Query: 17  PPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYY 76
           PPS KKRE S+TREED+LI+TPLGAG EVGRSCVYMSYKGK+VL                
Sbjct: 7   PPSFKKRELSATREEDKLIVTPLGAGTEVGRSCVYMSYKGKVVL---------------- 66

Query: 77  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTT 136
           FDCGIHPAYSGMAALPYFDEIDPSTIDVLLIT           FHLDHAASLPYFLEKTT
Sbjct: 67  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITH----------FHLDHAASLPYFLEKTT 126

Query: 137 FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG 196
           FKGRVFMTYATKAIYKLLLSDFVKVSKVS+EDML+DEQDINRSMDKIEVIDFHQTVEVNG
Sbjct: 127 FKGRVFMTYATKAIYKLLLSDFVKVSKVSIEDMLFDEQDINRSMDKIEVIDFHQTVEVNG 186

Query: 197 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 256
           IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG
Sbjct: 187 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 246

Query: 257 VQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI 316
           VQLHQPR+IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHN+PI
Sbjct: 247 VQLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNVPI 306

Query: 317 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 376
           YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG
Sbjct: 307 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 366

Query: 377 GLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY 436
           GLQSGLSRQLFD+WCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGL APLNMQVHY
Sbjct: 367 GLQSGLSRQLFDLWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLTAPLNMQVHY 426

Query: 437 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS 496
           ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKL+SQF+DRNTKILTPKNCQS
Sbjct: 427 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLISQFSDRNTKILTPKNCQS 486

Query: 497 VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ 556
           VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFA+QIMAP+DLHIFSQLSTANINQ
Sbjct: 487 VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAHQIMAPDDLHIFSQLSTANINQ 546

Query: 557 RITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSD 616
           RITIPYSNAFNVIVRRLKQVYESVES TDEES VP I VHDRVTVKHESERH+SLHWTSD
Sbjct: 547 RITIPYSNAFNVIVRRLKQVYESVESSTDEESGVPTILVHDRVTVKHESERHISLHWTSD 606

Query: 617 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGE 676
           PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEEN+KKAEKV HALLVSLFG+VKLG 
Sbjct: 607 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENKKKAEKVTHALLVSLFGNVKLGG 666

Query: 677 NGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS 729
           NGKLVINVDG+IAELDKQSGEVESENE LKERVKTAF+RIQCAVKPIP SAS
Sbjct: 667 NGKLVINVDGSIAELDKQSGEVESENEVLKERVKTAFRRIQCAVKPIPPSAS 692

[Close]

BLAST of Lsi04G007050 vs. NCBI nr
Match: XP_038877886.1 (cleavage and polyadenylation specificity factor subunit 3-I [Benincasa hispida])

HSP 1 Score: 1317.4 bits (3408), Expect = 0.0e+00
Identity = 676/712 (94.94%), Postives = 679/712 (95.37%), Query Frame = 0


Query: 17  PPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYY 76
           PPSLKKREAS+TREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL                
Sbjct: 7   PPSLKKREASATREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL---------------- 66

Query: 77  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTT 136
           FDCGIHPAYSGMAALPYFDEIDPSTIDVLLIT           FHLDHAASLPYFLEKTT
Sbjct: 67  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITH----------FHLDHAASLPYFLEKTT 126

Query: 137 FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG 196
           FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG
Sbjct: 127 FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG 186

Query: 197 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 256
           IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG
Sbjct: 187 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 246

Query: 257 VQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI 316
           VQLHQPR+IREKRFTDVVHSTISQGGRVLIP FALGRAQELLLILDEYWANHPELHNIPI
Sbjct: 247 VQLHQPRHIREKRFTDVVHSTISQGGRVLIPVFALGRAQELLLILDEYWANHPELHNIPI 306

Query: 317 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 376
           YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG
Sbjct: 307 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 366

Query: 377 GLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY 436
           GLQSGLSRQLFD+WCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY
Sbjct: 367 GLQSGLSRQLFDIWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY 426

Query: 437 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS 496
           ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS
Sbjct: 427 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS 486

Query: 497 VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ 556
           VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ
Sbjct: 487 VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ 546

Query: 557 RITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSD 616
           RITIPYSNAFNVIVRRLKQVYESVES TDEES VPMI VHDRVTVKHESERHVSLHW SD
Sbjct: 547 RITIPYSNAFNVIVRRLKQVYESVESSTDEESEVPMIRVHDRVTVKHESERHVSLHWISD 606

Query: 617 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGE 676
           PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEEN KKAEKVIHALLVSLFGDVKLGE
Sbjct: 607 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENNKKAEKVIHALLVSLFGDVKLGE 666

Query: 677 NGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS 729
           NGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS
Sbjct: 667 NGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS 692

[Close]

BLAST of Lsi04G007050 vs. NCBI nr
Match: XP_022151814.1 (cleavage and polyadenylation specificity factor subunit 3-I [Momordica charantia])

HSP 1 Score: 1309.7 bits (3388), Expect = 0.0e+00
Identity = 668/712 (93.82%), Postives = 679/712 (95.37%), Query Frame = 0


Query: 17  PPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYY 76
           PPSLKKRE+S+TREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL                
Sbjct: 7   PPSLKKRESSATREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL---------------- 66

Query: 77  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTT 136
           FDCGIHPAYSGMAALPYFDEIDPSTIDVLLIT           FHLDHAASLPYFLEKTT
Sbjct: 67  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITH----------FHLDHAASLPYFLEKTT 126

Query: 137 FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG 196
           FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG
Sbjct: 127 FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG 186

Query: 197 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 256
           IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG
Sbjct: 187 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 246

Query: 257 VQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI 316
           VQLHQPR+IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI
Sbjct: 247 VQLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI 306

Query: 317 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 376
           YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG
Sbjct: 307 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 366

Query: 377 GLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY 436
           GLQSGLSRQLFDMWCSDKKN+CVLPGYVVEGTLAKTIINEPKEVTLM+GLMAPLNMQVHY
Sbjct: 367 GLQSGLSRQLFDMWCSDKKNACVLPGYVVEGTLAKTIINEPKEVTLMNGLMAPLNMQVHY 426

Query: 437 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS 496
           ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKL+SQFADRNTKILTPKNCQS
Sbjct: 427 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLISQFADRNTKILTPKNCQS 486

Query: 497 VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ 556
           VEMYFNSQKMAKTIG+LAEKTPE GETVSGLLVKKGFAYQIMA +DLHIFSQLSTANINQ
Sbjct: 487 VEMYFNSQKMAKTIGRLAEKTPEAGETVSGLLVKKGFAYQIMASDDLHIFSQLSTANINQ 546

Query: 557 RITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSD 616
           RITIPYSNAFNVIVRRLKQVYESVESLTDEES VP ICVHDRVTVKHESE+HVSLHWTSD
Sbjct: 547 RITIPYSNAFNVIVRRLKQVYESVESLTDEESGVPAICVHDRVTVKHESEKHVSLHWTSD 606

Query: 617 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGE 676
           PLSDMVSDSVVALILNINREVPKVIVESEA KTEEENEKKAEKVIHALLVSLFGDVKLGE
Sbjct: 607 PLSDMVSDSVVALILNINREVPKVIVESEAAKTEEENEKKAEKVIHALLVSLFGDVKLGE 666

Query: 677 NGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS 729
           NGKLVINVDG+IAELDKQSGEVESENE LKERVKTAF+RIQCAVKPIPLSAS
Sbjct: 667 NGKLVINVDGSIAELDKQSGEVESENEGLKERVKTAFRRIQCAVKPIPLSAS 692

[Close]

BLAST of Lsi04G007050 vs. NCBI nr
Match: XP_011655552.2 (cleavage and polyadenylation specificity factor subunit 3-I-like [Cucumis sativus])

HSP 1 Score: 1307.7 bits (3383), Expect = 0.0e+00
Identity = 670/712 (94.10%), Postives = 678/712 (95.22%), Query Frame = 0


Query: 17  PPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYY 76
           PPSLKKR+ASSTREEDQLIITPLGAGNEVGRSCVYMSYK KIVL                
Sbjct: 7   PPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVL---------------- 66

Query: 77  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTT 136
           FDCGIHPAYSGMAALPYFDEIDPSTIDVLLIT           FHLDHAASLPYFLEKTT
Sbjct: 67  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITH----------FHLDHAASLPYFLEKTT 126

Query: 137 FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG 196
           FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG
Sbjct: 127 FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG 186

Query: 197 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 256
           IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG
Sbjct: 187 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 246

Query: 257 VQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI 316
           VQLHQPR+IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI
Sbjct: 247 VQLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI 306

Query: 317 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 376
           YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG
Sbjct: 307 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 366

Query: 377 GLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY 436
           GLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY
Sbjct: 367 GLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY 426

Query: 437 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS 496
           ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS
Sbjct: 427 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS 486

Query: 497 VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ 556
           VEMYFNSQKMAKTIGKLAEKTP+VGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ
Sbjct: 487 VEMYFNSQKMAKTIGKLAEKTPDVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ 546

Query: 557 RITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSD 616
           RITIPYSNAFNVIVRRLKQVYESVES TD+ES VPMI VHDRVTVK ESE+HVSLHWTSD
Sbjct: 547 RITIPYSNAFNVIVRRLKQVYESVESSTDDESGVPMIRVHDRVTVKQESEKHVSLHWTSD 606

Query: 617 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGE 676
           PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEEN KKAEKVIHALLVSLFGDVKLGE
Sbjct: 607 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENVKKAEKVIHALLVSLFGDVKLGE 666

Query: 677 NGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS 729
           NGKLVINVDGNIAE+DKQSGEVES+NEALKERVKTAFQRIQCAV PIPLS+S
Sbjct: 667 NGKLVINVDGNIAEVDKQSGEVESDNEALKERVKTAFQRIQCAVNPIPLSSS 692

[Close]

BLAST of Lsi04G007050 vs. NCBI nr
Match: KAG7012686.1 (Cleavage and polyadenylation specificity factor subunit 3-I [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1303.9 bits (3373), Expect = 0.0e+00
Identity = 664/710 (93.52%), Postives = 681/710 (95.92%), Query Frame = 0


Query: 18  PSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYYF 77
           PSLKKRE+S+TREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL                F
Sbjct: 8   PSLKKRESSATREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL----------------F 67

Query: 78  DCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTTF 137
           DCGIHPAYSGMAALPYFDEIDPSTIDVLLITQY++L     SFHLDHAASLPYFLEKTTF
Sbjct: 68  DCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYVVL-----SFHLDHAASLPYFLEKTTF 127

Query: 138 KGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGI 197
           KGRVFMTYATKAIYKLLLSDFVKVSKVS+EDMLYDEQDINRSMDKIEVIDFHQTVEVNGI
Sbjct: 128 KGRVFMTYATKAIYKLLLSDFVKVSKVSIEDMLYDEQDINRSMDKIEVIDFHQTVEVNGI 187

Query: 198 RFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGV 257
           RFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGV
Sbjct: 188 RFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGV 247

Query: 258 QLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIY 317
           QLHQPR+IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHN+PIY
Sbjct: 248 QLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNVPIY 307

Query: 318 YASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGG 377
           YASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGG
Sbjct: 308 YASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGG 367

Query: 378 LQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYI 437
           LQSGLSRQLFD+WCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYI
Sbjct: 368 LQSGLSRQLFDLWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHYI 427

Query: 438 SFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQSV 497
           SFSAHAD+AQTSAFLEELMPPNIILVHGEANEMGRLKQKLMS+FADRNTKILTPKNCQSV
Sbjct: 428 SFSAHADYAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSKFADRNTKILTPKNCQSV 487

Query: 498 EMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQR 557
           EMYFNSQKMAKTIGKLAE TPEV ETVSGLLVKKGFAYQIMAP+DLHIFSQLSTANI QR
Sbjct: 488 EMYFNSQKMAKTIGKLAENTPEVDETVSGLLVKKGFAYQIMAPDDLHIFSQLSTANIYQR 547

Query: 558 ITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSDP 617
           ITIPY+NAFNVIVRRLKQVYESVES TDEES VP + VHDRVTVKHESERHVSLHWTSDP
Sbjct: 548 ITIPYTNAFNVIVRRLKQVYESVESSTDEESGVPTVRVHDRVTVKHESERHVSLHWTSDP 607

Query: 618 LSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGEN 677
           LSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGEN
Sbjct: 608 LSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGEN 667

Query: 678 GKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSA 728
           GKLV+NVDG+IAE+DKQSGEVESENEALKERVKTAF+RIQ AVKPIPLSA
Sbjct: 668 GKLVVNVDGSIAEVDKQSGEVESENEALKERVKTAFRRIQSAVKPIPLSA 696

[Close]

BLAST of Lsi04G007050 vs. NCBI nr
Match: XP_011655548.2 (cleavage and polyadenylation specificity factor subunit 3-I isoform X1 [Cucumis sativus] >XP_031741341.1 cleavage and polyadenylation specificity factor subunit 3-I isoform X1 [Cucumis sativus])

HSP 1 Score: 1303.1 bits (3371), Expect = 0.0e+00
Identity = 668/712 (93.82%), Postives = 677/712 (95.08%), Query Frame = 0


Query: 17  PPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYY 76
           PPSLKKR+ASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL                
Sbjct: 7   PPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVL---------------- 66

Query: 77  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTT 136
           FDCGIHPAYSGMAALPYFDEIDPSTIDVLLIT           FHLDHAASLPYFLEKTT
Sbjct: 67  FDCGIHPAYSGMAALPYFDEIDPSTIDVLLITH----------FHLDHAASLPYFLEKTT 126

Query: 137 FKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNG 196
           FKGRVFMTYATKAIYKLLL DFVKVSKVSVEDMLYDEQDI+RSMDKIEVIDFHQTVEVNG
Sbjct: 127 FKGRVFMTYATKAIYKLLLLDFVKVSKVSVEDMLYDEQDISRSMDKIEVIDFHQTVEVNG 186

Query: 197 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 256
           IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG
Sbjct: 187 IRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYG 246

Query: 257 VQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI 316
           VQLHQPR+IREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI
Sbjct: 247 VQLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPI 306

Query: 317 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPG 376
           YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASP 
Sbjct: 307 YYASPLAKRCLTVYETYTLSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPS 366

Query: 377 GLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY 436
           GLQSGLSRQLF+MWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY
Sbjct: 367 GLQSGLSRQLFEMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPLNMQVHY 426

Query: 437 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS 496
           ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS
Sbjct: 427 ISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILTPKNCQS 486

Query: 497 VEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ 556
           VEMYFNSQKMAKTIGKLAEKTP+VGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ
Sbjct: 487 VEMYFNSQKMAKTIGKLAEKTPDVGETVSGLLVKKGFAYQIMAPEDLHIFSQLSTANINQ 546

Query: 557 RITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVSLHWTSD 616
           RITIPYSNAFNVIVRRLKQVYESVES TD+ES VPMI VHDRVTVK ESE+HVSLHWTSD
Sbjct: 547 RITIPYSNAFNVIVRRLKQVYESVESSTDDESGVPMIRVHDRVTVKQESEKHVSLHWTSD 606

Query: 617 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENEKKAEKVIHALLVSLFGDVKLGE 676
           PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEEN KKAEKVIHALLVSLFGDVKLGE
Sbjct: 607 PLSDMVSDSVVALILNINREVPKVIVESEAVKTEEENVKKAEKVIHALLVSLFGDVKLGE 666

Query: 677 NGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS 729
           NGKLVINVDGNIAE+DKQSGEVESENEALKERVKTAFQRIQCAV PIPLS+S
Sbjct: 667 NGKLVINVDGNIAEVDKQSGEVESENEALKERVKTAFQRIQCAVNPIPLSSS 692

[Close]

BLAST of Lsi04G007050 vs. TAIR 10
Match: AT1G61010.1 (cleavage and polyadenylation specificity factor 73-I )

HSP 1 Score: 1130.9 bits (2924), Expect = 0.0e+00
Identity = 562/719 (78.16%), Postives = 641/719 (89.15%), Query Frame = 0


Query: 13  LAHIPPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLV 72
           +A    SLK+RE   +R+ DQLI+TPLGAG+EVGRSCVYMS++GK +L            
Sbjct: 1   MASSSTSLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNIL------------ 60

Query: 73  SGYYFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFL 132
               FDCGIHPAYSGMAALPYFDEIDPS+IDVLLIT           FH+DHAASLPYFL
Sbjct: 61  ----FDCGIHPAYSGMAALPYFDEIDPSSIDVLLITH----------FHIDHAASLPYFL 120

Query: 133 EKTTFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTV 192
           EKTTF GRVFMT+ATKAIYKLLL+D+VKVSKVSVEDML+DEQDIN+SMDKIEVIDFHQTV
Sbjct: 121 EKTTFNGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTV 180

Query: 193 EVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIE 252
           EVNGI+FWCYTAGHVLGAAMFMVDIAGVR+LYTGDYSREEDRHLRAAE+PQFSPD+CIIE
Sbjct: 181 EVNGIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIE 240

Query: 253 STYGVQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELH 312
           ST GVQLHQ R+IREKRFTDV+HST++QGGRVLIPAFALGRAQELLLILDEYWANHP+LH
Sbjct: 241 STSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLH 300

Query: 313 NIPIYYASPLAKRCLTVYETYTLSMNDRIQN--AKSNPFRFKYISPLKSIEVFKDVGPSV 372
           NIPIYYASPLAK+C+ VY+TY LSMNDRI+N  A SNPF FK+ISPL SI+ F DVGPSV
Sbjct: 301 NIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSV 360

Query: 373 VMASPGGLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPL 432
           VMA+PGGLQSGLSRQLFD WCSDKKN+C++PGY+VEGTLAKTIINEPKEVTLM+GL APL
Sbjct: 361 VMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPL 420

Query: 433 NMQVHYISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILT 492
           NMQVHYISFSAHAD+AQTS FL+ELMPPNIILVHGEANEM RLKQKL+++F D NTKI+T
Sbjct: 421 NMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMT 480

Query: 493 PKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLS 552
           PKNC+SVEMYFNS+K+AKTIG+LAEKTP+VG+TVSG+LVKKGF YQIMAP++LH+FSQLS
Sbjct: 481 PKNCESVEMYFNSEKLAKTIGRLAEKTPDVGDTVSGILVKKGFTYQIMAPDELHVFSQLS 540

Query: 553 TANINQRITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVS 612
           TA + QRITIP+  AF VI  RL++++ESVE  TDEES +P + VH+RVTVK ESE+H+S
Sbjct: 541 TATVTQRITIPFVGAFGVIKHRLEKIFESVEFSTDEESGLPALKVHERVTVKQESEKHIS 600

Query: 613 LHWTSDPLSDMVSDSVVALILNINREVPKVIVESE-AVKTEEENEKKAEKVIHALLVSLF 672
           L W+SDP+SDMVSDS+VALILNI+REVPK+++E E AVK+EEEN KK EKVI+ALLVSLF
Sbjct: 601 LQWSSDPISDMVSDSIVALILNISREVPKIVMEEEDAVKSEEENGKKVEKVIYALLVSLF 660

Query: 673 GDVKLGENGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS 729
           GDVKLGENGKLVI VDGN+A+LDK+SGEVESE+  LKERV+ AF+RIQ AVKPIPLSAS
Sbjct: 661 GDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERVRVAFERIQSAVKPIPLSAS 693

[Close]

BLAST of Lsi04G007050 vs. TAIR 10
Match: AT1G61010.2 (cleavage and polyadenylation specificity factor 73-I )

HSP 1 Score: 1130.9 bits (2924), Expect = 0.0e+00
Identity = 562/719 (78.16%), Postives = 641/719 (89.15%), Query Frame = 0


Query: 13  LAHIPPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLV 72
           +A    SLK+RE   +R+ DQLI+TPLGAG+EVGRSCVYMS++GK +L            
Sbjct: 1   MASSSTSLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNIL------------ 60

Query: 73  SGYYFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFL 132
               FDCGIHPAYSGMAALPYFDEIDPS+IDVLLIT           FH+DHAASLPYFL
Sbjct: 61  ----FDCGIHPAYSGMAALPYFDEIDPSSIDVLLITH----------FHIDHAASLPYFL 120

Query: 133 EKTTFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTV 192
           EKTTF GRVFMT+ATKAIYKLLL+D+VKVSKVSVEDML+DEQDIN+SMDKIEVIDFHQTV
Sbjct: 121 EKTTFNGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTV 180

Query: 193 EVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIE 252
           EVNGI+FWCYTAGHVLGAAMFMVDIAGVR+LYTGDYSREEDRHLRAAE+PQFSPD+CIIE
Sbjct: 181 EVNGIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIE 240

Query: 253 STYGVQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELH 312
           ST GVQLHQ R+IREKRFTDV+HST++QGGRVLIPAFALGRAQELLLILDEYWANHP+LH
Sbjct: 241 STSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLH 300

Query: 313 NIPIYYASPLAKRCLTVYETYTLSMNDRIQN--AKSNPFRFKYISPLKSIEVFKDVGPSV 372
           NIPIYYASPLAK+C+ VY+TY LSMNDRI+N  A SNPF FK+ISPL SI+ F DVGPSV
Sbjct: 301 NIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSV 360

Query: 373 VMASPGGLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPL 432
           VMA+PGGLQSGLSRQLFD WCSDKKN+C++PGY+VEGTLAKTIINEPKEVTLM+GL APL
Sbjct: 361 VMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPL 420

Query: 433 NMQVHYISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILT 492
           NMQVHYISFSAHAD+AQTS FL+ELMPPNIILVHGEANEM RLKQKL+++F D NTKI+T
Sbjct: 421 NMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMT 480

Query: 493 PKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLS 552
           PKNC+SVEMYFNS+K+AKTIG+LAEKTP+VG+TVSG+LVKKGF YQIMAP++LH+FSQLS
Sbjct: 481 PKNCESVEMYFNSEKLAKTIGRLAEKTPDVGDTVSGILVKKGFTYQIMAPDELHVFSQLS 540

Query: 553 TANINQRITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVS 612
           TA + QRITIP+  AF VI  RL++++ESVE  TDEES +P + VH+RVTVK ESE+H+S
Sbjct: 541 TATVTQRITIPFVGAFGVIKHRLEKIFESVEFSTDEESGLPALKVHERVTVKQESEKHIS 600

Query: 613 LHWTSDPLSDMVSDSVVALILNINREVPKVIVESE-AVKTEEENEKKAEKVIHALLVSLF 672
           L W+SDP+SDMVSDS+VALILNI+REVPK+++E E AVK+EEEN KK EKVI+ALLVSLF
Sbjct: 601 LQWSSDPISDMVSDSIVALILNISREVPKIVMEEEDAVKSEEENGKKVEKVIYALLVSLF 660

Query: 673 GDVKLGENGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS 729
           GDVKLGENGKLVI VDGN+A+LDK+SGEVESE+  LKERV+ AF+RIQ AVKPIPLSAS
Sbjct: 661 GDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERVRVAFERIQSAVKPIPLSAS 693

[Close]

BLAST of Lsi04G007050 vs. TAIR 10
Match: AT1G61010.3 (cleavage and polyadenylation specificity factor 73-I )

HSP 1 Score: 1130.9 bits (2924), Expect = 0.0e+00
Identity = 562/719 (78.16%), Postives = 641/719 (89.15%), Query Frame = 0


Query: 13  LAHIPPSLKKREASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLV 72
           +A    SLK+RE   +R+ DQLI+TPLGAG+EVGRSCVYMS++GK +L            
Sbjct: 1   MASSSTSLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNIL------------ 60

Query: 73  SGYYFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLDHAASLPYFL 132
               FDCGIHPAYSGMAALPYFDEIDPS+IDVLLIT           FH+DHAASLPYFL
Sbjct: 61  ----FDCGIHPAYSGMAALPYFDEIDPSSIDVLLITH----------FHIDHAASLPYFL 120

Query: 133 EKTTFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTV 192
           EKTTF GRVFMT+ATKAIYKLLL+D+VKVSKVSVEDML+DEQDIN+SMDKIEVIDFHQTV
Sbjct: 121 EKTTFNGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINKSMDKIEVIDFHQTV 180

Query: 193 EVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIE 252
           EVNGI+FWCYTAGHVLGAAMFMVDIAGVR+LYTGDYSREEDRHLRAAE+PQFSPD+CIIE
Sbjct: 181 EVNGIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIE 240

Query: 253 STYGVQLHQPRNIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELH 312
           ST GVQLHQ R+IREKRFTDV+HST++QGGRVLIPAFALGRAQELLLILDEYWANHP+LH
Sbjct: 241 STSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWANHPDLH 300

Query: 313 NIPIYYASPLAKRCLTVYETYTLSMNDRIQN--AKSNPFRFKYISPLKSIEVFKDVGPSV 372
           NIPIYYASPLAK+C+ VY+TY LSMNDRI+N  A SNPF FK+ISPL SI+ F DVGPSV
Sbjct: 301 NIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSV 360

Query: 373 VMASPGGLQSGLSRQLFDMWCSDKKNSCVLPGYVVEGTLAKTIINEPKEVTLMSGLMAPL 432
           VMA+PGGLQSGLSRQLFD WCSDKKN+C++PGY+VEGTLAKTIINEPKEVTLM+GL APL
Sbjct: 361 VMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIINEPKEVTLMNGLTAPL 420

Query: 433 NMQVHYISFSAHADFAQTSAFLEELMPPNIILVHGEANEMGRLKQKLMSQFADRNTKILT 492
           NMQVHYISFSAHAD+AQTS FL+ELMPPNIILVHGEANEM RLKQKL+++F D NTKI+T
Sbjct: 421 NMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMT 480

Query: 493 PKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFAYQIMAPEDLHIFSQLS 552
           PKNC+SVEMYFNS+K+AKTIG+LAEKTP+VG+TVSG+LVKKGF YQIMAP++LH+FSQLS
Sbjct: 481 PKNCESVEMYFNSEKLAKTIGRLAEKTPDVGDTVSGILVKKGFTYQIMAPDELHVFSQLS 540

Query: 553 TANINQRITIPYSNAFNVIVRRLKQVYESVESLTDEESSVPMICVHDRVTVKHESERHVS 612
           TA + QRITIP+  AF VI  RL++++ESVE  TDEES +P + VH+RVTVK ESE+H+S
Sbjct: 541 TATVTQRITIPFVGAFGVIKHRLEKIFESVEFSTDEESGLPALKVHERVTVKQESEKHIS 600

Query: 613 LHWTSDPLSDMVSDSVVALILNINREVPKVIVESE-AVKTEEENEKKAEKVIHALLVSLF 672
           L W+SDP+SDMVSDS+VALILNI+REVPK+++E E AVK+EEEN KK EKVI+ALLVSLF
Sbjct: 601 LQWSSDPISDMVSDSIVALILNISREVPKIVMEEEDAVKSEEENGKKVEKVIYALLVSLF 660

Query: 673 GDVKLGENGKLVINVDGNIAELDKQSGEVESENEALKERVKTAFQRIQCAVKPIPLSAS 729
           GDVKLGENGKLVI VDGN+A+LDK+SGEVESE+  LKERV+ AF+RIQ AVKPIPLSAS
Sbjct: 661 GDVKLGENGKLVIRVDGNVAQLDKESGEVESEHSGLKERVRVAFERIQSAVKPIPLSAS 693

[Close]

BLAST of Lsi04G007050 vs. TAIR 10
Match: AT2G01730.1 (cleavage and polyadenylation specificity factor 73 kDa subunit-II )

HSP 1 Score: 265.0 bits (676), Expect = 1.8e-70
Identity = 160/449 (35.63%), Postives = 232/449 (51.67%), Query Frame = 0


Query: 39  LGAGNEVGRSCVYMSYKGKIVLVCFELIIISHLVSGYYFDCGIHPAYSGMAALPYFDEID 98
           LGAG E+G+SCV ++  GK ++                FDCG+H         P F  I 
Sbjct: 8   LGAGQEIGKSCVVVTINGKKIM----------------FDCGMHMGCDDHNRYPNFSLIS 67

Query: 99  PSTIDVLLITQYIILCTLIRSFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDF 158
            S           I C +I  FH+DH  +LPYF E   + G ++M+Y TKA+  L+L D+
Sbjct: 68  KSG-----DFDNAISCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDY 127

Query: 159 VKVS-KVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVN-GIRFWCYTAGHVLGAAMFMVD 218
            +V      E+ L+    I   M K+  ID  QT++V+  ++   Y AGHVLGA M    
Sbjct: 128 RRVMVDRRGEEELFTTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAK 187

Query: 219 IAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRNIREKRFTDVVHS 278
           +    ++YTGDY+   DRHL AA++ +   D+ I ESTY   +   +  RE+ F   VH 
Sbjct: 188 MGDAAIVYTGDYNMTTDRHLGAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHK 247

Query: 279 TISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNI--PIYYASPLAKRCLTVYETYT 338
            ++ GG+ LIP+FALGRAQEL ++LD+YW    E  NI  PIY++S L  +    Y+   
Sbjct: 248 CVAGGGKALIPSFALGRAQELCMLLDDYW----ERMNIKVPIYFSSGLTIQANMYYKMLI 307

Query: 339 --LSMNDRIQNAKSNPFRFKYISPLKSIEVFKDVGPSVVMASPGGLQSGLSRQLFDMWCS 398
              S N + ++   NPF FK +       +    GP V+ A+PG L +G S ++F  W  
Sbjct: 308 SWTSQNVKEKHNTHNPFDFKNVKDFDR-SLIHAPGPCVLFATPGMLCAGFSLEVFKHWAP 367

Query: 399 DKKNSCVLPGYVVEGTLA-KTIINEPKEVTLMSGLMAPLNMQVHYISFSAHADFAQTSAF 458
              N   LPGY V GT+  K +  +P  V L +G    +  +VH ++FS H D       
Sbjct: 368 SPLNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDL 427

Query: 459 LEELMPPNIILVHGEANEMGRLKQKLMSQ 481
            + L P N++LVHGE   M  LK+K+ S+
Sbjct: 428 TKFLSPKNVVLVHGEKPSMMILKEKITSE 430

[Close]

BLAST of Lsi04G007050 vs. TAIR 10
Match: AT5G23880.1 (cleavage and polyadenylation specificity factor 100 )

HSP 1 Score: 126.7 bits (317), Expect = 7.5e-29
Identity = 97/370 (26.22%), Postives = 179/370 (48.38%), Query Frame = 0


Query: 68  ISHLVS----GYYFDCGIHPAYSGMAALPYFDEIDPSTIDVLLITQYIILCTLIRSFHLD 127
           +S+LVS     +  DCG +  +      P       STID +L++    L          
Sbjct: 19  LSYLVSIDGFNFLIDCGWNDLFDTSLLEPL--SRVASTIDAVLLSHPDTL---------- 78

Query: 128 HAASLPYFLEKTTFKGRVFMTYATKAIYKL----LLSDFVKVSKVSVEDMLYDEQDINRS 187
           H  +LPY +++      V   YAT+ +++L    +   F+   +VS  D L+   DI+ +
Sbjct: 79  HIGALPYAMKQLGLSAPV---YATEPVHRLGLLTMYDQFLSRKQVSDFD-LFTLDDIDSA 138

Query: 188 MDKIEVIDFHQTVEVN----GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 247
              +  + + Q   ++    GI    + AGH+LG +++ +   G  V+Y  DY+  ++RH
Sbjct: 139 FQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKERH 198

Query: 248 LRAAEMPQF-SPDVCIIESTYGVQLHQ-PRNIREKRFTDVVHSTISQGGRVLIPAFALGR 307
           L    +  F  P V I ++ + +  +Q  R  R+K F D +   +  GG VL+P    GR
Sbjct: 199 LNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTAGR 258

Query: 308 AQELLLILDEYWANHPELHNIPIYYASPLAKRCLTVYETYTLSMNDRI----QNAKSNPF 367
             ELLLIL+++W+      + PIY+ + ++   +   +++   M+D I    + ++ N F
Sbjct: 259 VLELLLILEQHWSQRG--FSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 318

Query: 368 RFKYISPLKSIEVFKDV--GPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVLPGYVVEG 418
             ++++ L +     +   GP VV+AS   L++G +R++F  W +D +N  +       G
Sbjct: 319 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 370

The following BLAST results are available for this feature:

BLAST of Lsi04G007050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C952	0.0e+00	78.16	Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thali...	[more]
Q9UKF6	2.7e-196	50.35	Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens OX=960...	[more]
P79101	5.9e-196	50.21	Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus OX=9913 ...	[more]
Q9QXK7	5.0e-195	49.93	Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus OX=100...	[more]
Q86A79	1.2e-188	45.47	Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium disco...	[more]

BLAST of Lsi04G007050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DE61	0.0e+00	93.82	cleavage and polyadenylation specificity factor subunit 3-I OS=Momordica charant...	[more]
A0A6J1HTF4	0.0e+00	92.82	cleavage and polyadenylation specificity factor subunit 3-I-like OS=Cucurbita ma...	[more]
A0A6J1G1N4	0.0e+00	92.96	cleavage and polyadenylation specificity factor subunit 3-I-like OS=Cucurbita mo...	[more]
A0A6J1GZU7	0.0e+00	92.26	cleavage and polyadenylation specificity factor subunit 3-I-like OS=Cucurbita mo...	[more]
A0A6J1KE99	0.0e+00	91.99	cleavage and polyadenylation specificity factor subunit 3-I-like OS=Cucurbita ma...	[more]

BLAST of Lsi04G007050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877886.1	0.0e+00	94.94	cleavage and polyadenylation specificity factor subunit 3-I [Benincasa hispida]	[more]
XP_022151814.1	0.0e+00	93.82	cleavage and polyadenylation specificity factor subunit 3-I [Momordica charantia...	[more]
XP_011655552.2	0.0e+00	94.10	cleavage and polyadenylation specificity factor subunit 3-I-like [Cucumis sativu...	[more]
KAG7012686.1	0.0e+00	93.52	Cleavage and polyadenylation specificity factor subunit 3-I [Cucurbita argyrospe...	[more]
XP_011655548.2	0.0e+00	93.82	cleavage and polyadenylation specificity factor subunit 3-I isoform X1 [Cucumis ...	[more]

BLAST of Lsi04G007050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61010.1	0.0e+00	78.16	cleavage and polyadenylation specificity factor 73-I	[more]
AT1G61010.2	0.0e+00	78.16	cleavage and polyadenylation specificity factor 73-I	[more]
AT1G61010.3	0.0e+00	78.16	cleavage and polyadenylation specificity factor 73-I	[more]
AT2G01730.1	1.8e-70	35.63	cleavage and polyadenylation specificity factor 73 kDa subunit-II	[more]
AT5G23880.1	7.5e-29	26.22	cleavage and polyadenylation specificity factor 100	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 688..708
None	No IPR available	GENE3D	3.40.50.10890		coord: 262..441 e-value: 1.7E-137 score: 460.2
None	No IPR available	PANTHER	PTHR11203:SF48	SUBFAMILY NOT NAMED	coord: 19..725
None	No IPR available	PANTHER	PTHR11203	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	coord: 19..725
None	No IPR available	CDD	cd16292	CPSF3-like_MBL-fold	coord: 34..253 e-value: 4.00253E-134 score: 391.948
IPR021718	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term	SMART	SM01098	CPSF73_100_C_2	coord: 520..723 e-value: 3.4E-41 score: 152.8
IPR021718	Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term	PFAM	PF11718	CPSF73-100_C	coord: 523..722 e-value: 3.7E-45 score: 154.1
IPR022712	Beta-Casp domain	SMART	SM01027	Beta_Casp_2	coord: 294..413 e-value: 2.1E-37 score: 140.3
IPR022712	Beta-Casp domain	PFAM	PF10996	Beta-Casp	coord: 294..413 e-value: 3.2E-26 score: 91.8
IPR001279	Metallo-beta-lactamase	PFAM	PF16661	Lactamase_B_6	coord: 123..242 e-value: 1.9E-11 score: 43.8
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	GENE3D	3.60.15.10		coord: 39..470 e-value: 1.7E-137 score: 460.2
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	SUPERFAMILY	56281	Metallo-hydrolase/oxidoreductase	coord: 32..501
IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain	PFAM	PF07521	RMMBL	coord: 428..482 e-value: 3.9E-15 score: 55.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G007050.1	Lsi04G007050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005634	nucleus