Lsi04G006980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G006980
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cysteine synthase
Location	chr04: 6368485 .. 6370729 (-)
RNA-Seq Expression	Lsi04G006980
Synteny	Lsi04G006980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTTTACAACATCTCTTTGGATGACCTTGATAACAACAGGACAACAACTATTTCCACTTTACAAGAAGCCATTTGGACTGAAATTTACAAAAAGAAAGTCAAATTCTTCCTTTGGGAGCTAAGCCACAATGCTATCAACACCCAAGACAAAATGCAAGATCATGTCCCTTACTTGTCTCTTTCTCCACAATGTTGTATTATCTGTAAAGGCGCACAAGAGACTAAAGTCACTTATTTATCAACTGTTATTGTGACATAAGCTTTTAGAAAGAACTGATTGATGTATCAAAGTGGCACCTAATTTCCTCCTATTGACATCAACGGTCTTCTTAATGGCCATCCTTACACTGAAAAGGGAAAAGAATCCTTTGGATGAATTTCGTTCAGGCTTTTTTGTGGATAATTTGGAAGGAATGCAACAAAAATTTTATTCAAGATAAGGAAGACTCTTTTGATCGTTAGTTTGATATCCTTTTCCTTGCCATGACTTCATGTAAATCACTACTTTTTATGGATCTTATCCTCTCACCTCTCTTTTGACCCATAGGAGAAATCTTTTATACCTTCTTTAATTTGAGCTAATTTGAGCATTAGCCATTCTTTCATAAATTTCATACATCCAATGAAATTTGTTTCTTATAAAGTGTGTCTATATATATATATATATATTTCTAGTTATTGAAGTTTAACAGCTTTTCTTCGGTTCCATTCTACAGGTTATTGGTATTGAACCTACTGCAAGTAACGTAATTAATGGAGGAAAGCCTGGTAAGTAAACCATTTAACTTCTACTGATTATTTTAAGCTATGCATTTTATTTATTTTTTTAATAACTCTAAATAGCGGTGTCCATTATATTATTATGGAAACACAGGACCTCATAAAATTCAAGGAATTGGAGCTGGTTTTATACCCAATAATTTGGACGAAAGTGTAGTTGATGAAGTCATCGAGGTCCGGTTCCTACCTTTTTTTCCCCAATCATGCGCTCAATCAAGCATTTTTCATATACTCTTAAGTCTTATTTAGGTTTCCATTTAAAATTCTGACCAATAGTGACTGATGCAGATATCCGATGAAGAAGCTATTGAGACTGCAAAACAATTGGCCATGCAGGAAGGCTTACTGGTTAGTGTTCTCAGTAATCTTTTTCAATCTGAAACGATATGGCAAAACAGAAAAAGAAGTGCTTTTTCAGCTAAACCCAAGTATAAAAAGTGGGGTTGCTTTTTTAGGTCCGTTTGATATCTACTAAAGTGTACGAATATTTCCTGTTAGATGATATAAGATTAAATTTGCCTTCACCTATCAGCTTAAGCTTTTGGGTCAATCGACGATTTAAGATGGTATCAGATTAGGTTGGTTCAGTATGTTTTCGGTTCAACCCCTGCAACGTTGTTTTCCCCCATTAATATTATTTCCATTGGCTTTGATATTAGGTGGGCCTTTCTTCTGGAGCAACAGCAGCTGCTGCATTGAAACTGGCAAAAAAACCTGAGAATGCTGGGAAGCTTATTGCGGTATGCACCCTTTTTGTTAAGAATATATATATAAACTTAAATGGATATTTTCCCTCTCATGATCCGTTACGAATGGACAAAAAAAATAGGAAAACTAGTTTCTTTTAAAAAAAAAAAAAAAAAACTGCCGTGTGGTATTTTTTATATGAGCTGTTCAGAGATATGTGTAACTCAGAAAGTACCTTAGTATTTTTTGTTACATAATATCTATATTCAGAGATTAATCATGAGTTGAATTAATTCTCTTGAATCTAATCACTTCGAATGTAACTTTTTTTAGGTTATATTCGCCAGCTTTGGCGAGCGATACCTATCCTCAGACCTTTTCAAGTCAATCCGAGAAGAATGTGAAAACATGCAACATGAGCCATGAGCCATGAGCCATGAAGTACATTTTATTAGGCCTCCAATCCACACGCTTATGCTCGAAGGAATAAAGTGTGATGGGTTATTGTTGGTTGCCTTTGTTTATTTATAATTGTTACTGTTTTAATGGTCATTGGCATAGTTTTGGTGTTTATGTTGTGAACTGTTTTCATGGAATCGTTTGTAGTTATAACCAAGGTTTAAAGTATCCATATCGATGGAAATATGGAGGTTTGAATTTTACAGAAATTTTGATGGAAATCTTTATTTTGATGGATATTTCTGAAAAAATTATAAAAACAATCAAAATTAGAAATAAATTTAAATTAATAAGTAAATATTTTATTACTTTC

mRNA sequence

ATGGCTCGGTGTCCATTATATTATTATGGAAACACAGGACCTCATAAAATTCAAGGAATTGGAGCTGGTTTTATACCCAATAATTTGGACGAAAGTGTAGTTGATGAAGTCATCGAGATATCCGATGAAGAAGCTATTGAGACTGCAAAACAATTGGCCATGCAGGAAGGCTTACTGGTTATATTCGCCAGCTTTGGCGAGCGATACCTATCCTCAGACCTTTTCAAGTCAATCCGAGAAGAATGTGAAAACATGCAACATGAGCCATGAGCCATGAGCCATGAAGTACATTTTATTAGGCCTCCAATCCACACGCTTATGCTCGAAGGAATAAAGTGTGATGGGTTATTGTTGGTTGCCTTTGTTTATTTATAATTGTTACTGTTTTAATGGTCATTGGCATAGTTTTGGTGTTTATGTTGTGAACTGTTTTCATGGAATCGTTTGTAGTTATAACCAAGGTTTAAAGTATCCATATCGATGGAAATATGGAGGTTTGAATTTTACAGAAATTTTGATGGAAATCTTTATTTTGATGGATATTTCTGAAAAAATTATAAAAACAATCAAAATTAGAAATAAATTTAAATTAATAAGTAAATATTTTATTACTTTC

Coding sequence (CDS)

ATGGCTCGGTGTCCATTATATTATTATGGAAACACAGGACCTCATAAAATTCAAGGAATTGGAGCTGGTTTTATACCCAATAATTTGGACGAAAGTGTAGTTGATGAAGTCATCGAGATATCCGATGAAGAAGCTATTGAGACTGCAAAACAATTGGCCATGCAGGAAGGCTTACTGGTTATATTCGCCAGCTTTGGCGAGCGATACCTATCCTCAGACCTTTTCAAGTCAATCCGAGAAGAATGTGAAAACATGCAACATGAGCCATGA

Protein sequence

MARCPLYYYGNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLVIFASFGERYLSSDLFKSIREECENMQHEP

Homology

[Close]

BLAST of Lsi04G006980 vs. ExPASy Swiss-Prot
Match: P32260 (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea OX=3562 GN=CYSK PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-23
Identity = 60/106 (56.60%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQG+GAGF+P+NLD  V+DEVIE+S EEA+E AKQLAM+EGLL          
Sbjct: 278 GKPGPHKIQGLGAGFVPSNLDLGVMDEVIEVSSEEAVEMAKQLAMKEGLLVGISSGAAAA 337

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHE 89
                            V+F SFGERYLSS LF+SIREECENM+ E
Sbjct: 338 AAVRIGKRPENAGKLIAVVFPSFGERYLSSILFQSIREECENMKPE 383

[Close]

BLAST of Lsi04G006980 vs. ExPASy Swiss-Prot
Match: P47999 (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana OX=3702 GN=OASB PE=1 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 3.7e-23
Identity = 60/106 (56.60%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGF+P NLD ++VDE I IS EEAIET+KQLA+QEGLL          
Sbjct: 286 GKPGPHKIQGIGAGFVPKNLDLAIVDEYIAISSEEAIETSKQLALQEGLLVGISSGAAAA 345

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHE 89
                            V+F SFGERYLS+ LF+SIREECE MQ E
Sbjct: 346 AAIQVAKRPENAGKLIAVVFPSFGERYLSTQLFQSIREECEQMQPE 391

[Close]

BLAST of Lsi04G006980 vs. ExPASy Swiss-Prot
Match: O81155 (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.1e-23
Identity = 59/106 (55.66%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGFIP NLD+ V+DEVIEIS +EA+ETA+ LA+QEGLL          
Sbjct: 280 GKPGPHKIQGIGAGFIPGNLDQDVMDEVIEISSDEAVETARTLALQEGLLVGISSGAAAL 339

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHE 89
                            V+F S+GERYLSS LF+SIREECE M+ E
Sbjct: 340 AAIQVGKRPENAGKLIGVVFPSYGERYLSSILFQSIREECEKMKPE 385

[Close]

BLAST of Lsi04G006980 vs. ExPASy Swiss-Prot
Match: Q43725 (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OASC PE=1 SV=3)

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-22
Identity = 59/106 (55.66%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGFIP NLD+ ++DEVI IS EEAIETAKQLA++EGL+          
Sbjct: 324 GKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAA 383

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHE 89
                            V+F SFGERYLS+ LF+SIREE E MQ E
Sbjct: 384 AAIKVAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQPE 429

[Close]

BLAST of Lsi04G006980 vs. ExPASy Swiss-Prot
Match: Q43317 (Cysteine synthase OS=Citrullus lanatus OX=3654 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-19
Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLV--------- 69
           G  GPHKIQGIGAGFIP  LD +++DEVI++S EE+IETAK LA++EGLLV         
Sbjct: 219 GKPGPHKIQGIGAGFIPGVLDVNLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAA 278

Query: 70  ------------------IFASFGERYLSSDLFKSIREECENMQHEP 90
                             +F SFGERYLS+ LF+S++ E ENM  EP
Sbjct: 279 AAIRIAKRPENAGKLIVAVFPSFGERYLSTVLFESVKRETENMVFEP 325

[Close]

BLAST of Lsi04G006980 vs. ExPASy TrEMBL
Match: A0A0A0KPX9 (Cysteine synthase OS=Cucumis sativus OX=3659 GN=Csa_5G589260 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.0e-28
Identity = 74/107 (69.16%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGFIPNNLDE VVDEVIEISDEEAIETAKQLAMQEGLL          
Sbjct: 284 GKPGPHKIQGIGAGFIPNNLDEGVVDEVIEISDEEAIETAKQLAMQEGLLVGISSGATGA 343

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHEP 90
                            V+FASFGERYLSS LF SIREECENMQHEP
Sbjct: 344 AALKVAKRPENAGKLIAVVFASFGERYLSSALFHSIREECENMQHEP 390

[Close]

BLAST of Lsi04G006980 vs. ExPASy TrEMBL
Match: A0A5D3CZX6 (Cysteine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002390 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.9e-28
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGFIPNNLDESVVDEVIEI+DEEA+ETAKQLAMQEGLL          
Sbjct: 283 GKPGPHKIQGIGAGFIPNNLDESVVDEVIEITDEEAVETAKQLAMQEGLLVGISSGATAA 342

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHEP 90
                            V+FASFGERYLSS LF SIREECENMQHEP
Sbjct: 343 AALKVAKRPENAGKLVAVVFASFGERYLSSVLFHSIREECENMQHEP 389

[Close]

BLAST of Lsi04G006980 vs. ExPASy TrEMBL
Match: A0A5A7SXJ3 (Cysteine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G001760 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.9e-28
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGFIPNNLDESVVDEVIEI+DEEA+ETAKQLAMQEGLL          
Sbjct: 283 GKPGPHKIQGIGAGFIPNNLDESVVDEVIEITDEEAVETAKQLAMQEGLLVGISSGATAA 342

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHEP 90
                            V+FASFGERYLSS LF SIREECENMQHEP
Sbjct: 343 AALKVAKRPENAGKLVAVVFASFGERYLSSVLFHSIREECENMQHEP 389

[Close]

BLAST of Lsi04G006980 vs. ExPASy TrEMBL
Match: A0A1S3BE19 (Cysteine synthase OS=Cucumis melo OX=3656 GN=LOC103488872 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.9e-28
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGFIPNNLDESVVDEVIEI+DEEA+ETAKQLAMQEGLL          
Sbjct: 283 GKPGPHKIQGIGAGFIPNNLDESVVDEVIEITDEEAVETAKQLAMQEGLLVGISSGATAA 342

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHEP 90
                            V+FASFGERYLSS LF SIREECENMQHEP
Sbjct: 343 AALKVAKRPENAGKLVAVVFASFGERYLSSVLFHSIREECENMQHEP 389

[Close]

BLAST of Lsi04G006980 vs. ExPASy TrEMBL
Match: A0A1D6MPD0 (Cysteine synthase mitochondrial OS=Zea mays OX=4577 GN=100272829 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.3e-27
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLVIFASFGERY 69
           G  GPHKIQGIGAGF+P NLD  ++DEVIEIS +EA+ETAKQLA+QEGLLV+F SFGERY
Sbjct: 154 GKPGPHKIQGIGAGFVPRNLDSDILDEVIEISSDEAVETAKQLAVQEGLLVVFPSFGERY 213

Query: 70  LSSDLFKSIREECENMQHEP 90
           LSS L++SIREECENMQ EP
Sbjct: 214 LSSVLYQSIREECENMQPEP 233

[Close]

BLAST of Lsi04G006980 vs. NCBI nr
Match: XP_004135335.1 (cysteine synthase [Cucumis sativus] >KGN51658.1 hypothetical protein Csa_009249 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 6.2e-28
Identity = 74/107 (69.16%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGFIPNNLDE VVDEVIEISDEEAIETAKQLAMQEGLL          
Sbjct: 284 GKPGPHKIQGIGAGFIPNNLDEGVVDEVIEISDEEAIETAKQLAMQEGLLVGISSGATGA 343

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHEP 90
                            V+FASFGERYLSS LF SIREECENMQHEP
Sbjct: 344 AALKVAKRPENAGKLIAVVFASFGERYLSSALFHSIREECENMQHEP 390

[Close]

BLAST of Lsi04G006980 vs. NCBI nr
Match: XP_008446019.1 (PREDICTED: cysteine synthase [Cucumis melo] >TYK15739.1 cysteine synthase [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 8.1e-28
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGFIPNNLDESVVDEVIEI+DEEA+ETAKQLAMQEGLL          
Sbjct: 283 GKPGPHKIQGIGAGFIPNNLDESVVDEVIEITDEEAVETAKQLAMQEGLLVGISSGATAA 342

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHEP 90
                            V+FASFGERYLSS LF SIREECENMQHEP
Sbjct: 343 AALKVAKRPENAGKLVAVVFASFGERYLSSVLFHSIREECENMQHEP 389

[Close]

BLAST of Lsi04G006980 vs. NCBI nr
Match: KAA0034181.1 (cysteine synthase [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 8.1e-28
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGFIPNNLDESVVDEVIEI+DEEA+ETAKQLAMQEGLL          
Sbjct: 283 GKPGPHKIQGIGAGFIPNNLDESVVDEVIEITDEEAVETAKQLAMQEGLLVGISSGATAA 342

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHEP 90
                            V+FASFGERYLSS LF SIREECENMQHEP
Sbjct: 343 AALKVAKRPENAGKLVAVVFASFGERYLSSVLFHSIREECENMQHEP 389

[Close]

BLAST of Lsi04G006980 vs. NCBI nr
Match: XP_038891996.1 (cysteine synthase-like isoform X1 [Benincasa hispida])

HSP 1 Score: 131.0 bits (328), Expect = 5.2e-27
Identity = 72/107 (67.29%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  G HKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLA+QEGLL          
Sbjct: 289 GKPGSHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLALQEGLLVGLSSGGTAA 348

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHEP 90
                            V+FASFGERYLSS LF+S+REECENMQHEP
Sbjct: 349 AALKVAKRPENAGKLIAVVFASFGERYLSSVLFQSLREECENMQHEP 395

[Close]

BLAST of Lsi04G006980 vs. NCBI nr
Match: ONM30907.1 (Cysteine synthase mitochondrial [Zea mays])

HSP 1 Score: 130.6 bits (327), Expect = 6.9e-27
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLVIFASFGERY 69
           G  GPHKIQGIGAGF+P NLD  ++DEVIEIS +EA+ETAKQLA+QEGLLV+F SFGERY
Sbjct: 154 GKPGPHKIQGIGAGFVPRNLDSDILDEVIEISSDEAVETAKQLAVQEGLLVVFPSFGERY 213

Query: 70  LSSDLFKSIREECENMQHEP 90
           LSS L++SIREECENMQ EP
Sbjct: 214 LSSVLYQSIREECENMQPEP 233

[Close]

BLAST of Lsi04G006980 vs. TAIR 10
Match: AT2G43750.1 (O-acetylserine (thiol) lyase B )

HSP 1 Score: 108.6 bits (270), Expect = 2.6e-24
Identity = 60/106 (56.60%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGF+P NLD ++VDE I IS EEAIET+KQLA+QEGLL          
Sbjct: 286 GKPGPHKIQGIGAGFVPKNLDLAIVDEYIAISSEEAIETSKQLALQEGLLVGISSGAAAA 345

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHE 89
                            V+F SFGERYLS+ LF+SIREECE MQ E
Sbjct: 346 AAIQVAKRPENAGKLIAVVFPSFGERYLSTQLFQSIREECEQMQPE 391

[Close]

BLAST of Lsi04G006980 vs. TAIR 10
Match: AT2G43750.2 (O-acetylserine (thiol) lyase B )

HSP 1 Score: 108.6 bits (270), Expect = 2.6e-24
Identity = 60/106 (56.60%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGF+P NLD ++VDE I IS EEAIET+KQLA+QEGLL          
Sbjct: 286 GKPGPHKIQGIGAGFVPKNLDLAIVDEYIAISSEEAIETSKQLALQEGLLVGISSGAAAA 345

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHE 89
                            V+F SFGERYLS+ LF+SIREECE MQ E
Sbjct: 346 AAIQVAKRPENAGKLIAVVFPSFGERYLSTQLFQSIREECEQMQPE 391

[Close]

BLAST of Lsi04G006980 vs. TAIR 10
Match: AT3G59760.1 (O-acetylserine (thiol) lyase isoform C )

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-23
Identity = 59/106 (55.66%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGFIP NLD+ ++DEVI IS EEAIETAKQLA++EGL+          
Sbjct: 324 GKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAA 383

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHE 89
                            V+F SFGERYLS+ LF+SIREE E MQ E
Sbjct: 384 AAIKVAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQPE 429

[Close]

BLAST of Lsi04G006980 vs. TAIR 10
Match: AT3G59760.3 (O-acetylserine (thiol) lyase isoform C )

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-23
Identity = 59/106 (55.66%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 10  GNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLL---------- 69
           G  GPHKIQGIGAGFIP NLD+ ++DEVI IS EEAIETAKQLA++EGL+          
Sbjct: 324 GKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAA 383

Query: 70  -----------------VIFASFGERYLSSDLFKSIREECENMQHE 89
                            V+F SFGERYLS+ LF+SIREE E MQ E
Sbjct: 384 AAIKVAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQPE 429

[Close]

BLAST of Lsi04G006980 vs. TAIR 10
Match: AT3G22460.1 (O-acetylserine (thiol) lyase (OAS-TL) isoform A2 )

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-18
Identity = 50/112 (44.64%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 5   PLYYYGNTGPHKIQGIGAGFIPNNLDESVVDEVIEISDEEAIETAKQLAMQEGLLV---- 64
           P+   G  GPHKIQGIGAGFIP  LD  ++DEV+++S EE+I+ A+ LA +EGLLV    
Sbjct: 194 PILSGGKPGPHKIQGIGAGFIPGILDVDLIDEVVQVSSEESIDMARLLAREEGLLVGISS 253

Query: 65  -----------------------IFASFGERYLSSDLFKSIREECENMQHEP 90
                                  +F SFGERYLS+ LF + R+E E M  EP
Sbjct: 254 GAAATAAIKLAKRPENAGKLIVAVFPSFGERYLSTVLFDAARKEAETMTFEP 305

The following BLAST results are available for this feature:

BLAST of Lsi04G006980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32260	1.6e-23	56.60	Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea OX=3562 GN=C...	[more]
P47999	3.7e-23	56.60	Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
O81155	8.1e-23	55.66	Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum OX=4113 PE=2...	[more]
Q43725	2.4e-22	55.66	Cysteine synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OASC PE=1 SV...	[more]
Q43317	1.1e-19	50.47	Cysteine synthase OS=Citrullus lanatus OX=3654 PE=1 SV=1	[more]

BLAST of Lsi04G006980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPX9	3.0e-28	69.16	Cysteine synthase OS=Cucumis sativus OX=3659 GN=Csa_5G589260 PE=3 SV=1	[more]
A0A5D3CZX6	3.9e-28	68.22	Cysteine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002...	[more]
A0A5A7SXJ3	3.9e-28	68.22	Cysteine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G001...	[more]
A0A1S3BE19	3.9e-28	68.22	Cysteine synthase OS=Cucumis melo OX=3656 GN=LOC103488872 PE=3 SV=1	[more]
A0A1D6MPD0	3.3e-27	77.50	Cysteine synthase mitochondrial OS=Zea mays OX=4577 GN=100272829 PE=4 SV=1	[more]

BLAST of Lsi04G006980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135335.1	6.2e-28	69.16	cysteine synthase [Cucumis sativus] >KGN51658.1 hypothetical protein Csa_009249 ...	[more]
XP_008446019.1	8.1e-28	68.22	PREDICTED: cysteine synthase [Cucumis melo] >TYK15739.1 cysteine synthase [Cucum...	[more]
KAA0034181.1	8.1e-28	68.22	cysteine synthase [Cucumis melo var. makuwa]	[more]
XP_038891996.1	5.2e-27	67.29	cysteine synthase-like isoform X1 [Benincasa hispida]	[more]
ONM30907.1	6.9e-27	77.50	Cysteine synthase mitochondrial [Zea mays]	[more]

BLAST of Lsi04G006980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43750.1	2.6e-24	56.60	O-acetylserine (thiol) lyase B	[more]
AT2G43750.2	2.6e-24	56.60	O-acetylserine (thiol) lyase B	[more]
AT3G59760.1	1.7e-23	55.66	O-acetylserine (thiol) lyase isoform C	[more]
AT3G59760.3	1.7e-23	55.66	O-acetylserine (thiol) lyase isoform C	[more]
AT3G22460.1	1.6e-18	44.64	O-acetylserine (thiol) lyase (OAS-TL) isoform A2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036052	Tryptophan synthase beta subunit-like PLP-dependent enzyme	GENE3D	3.40.50.1100		coord: 1..64 e-value: 1.2E-17 score: 66.1
IPR036052	Tryptophan synthase beta subunit-like PLP-dependent enzyme	SUPERFAMILY	53686	Tryptophan synthase beta subunit-like PLP-dependent enzymes	coord: 3..70
None	No IPR available	PIRSR	PIRSR605856-51	PIRSR605856-51	coord: 10..60 e-value: 5.0E-18 score: 63.2
None	No IPR available	PANTHER	PTHR10314	CYSTATHIONINE BETA-SYNTHASE	coord: 10..60 coord: 60..87
None	No IPR available	PANTHER	PTHR10314:SF190	CYSTEINE SYNTHASE, CHLOROPLASTIC/CHROMOPLASTIC	coord: 10..60 coord: 60..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G006980.1	Lsi04G006980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006535	cysteine biosynthetic process from serine
biological_process	GO:0009567	double fertilization forming a zygote and endosperm
biological_process	GO:0009860	pollen tube growth
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004124	cysteine synthase activity