Lsi04G006720 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G006720
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 6160912 .. 6167620 (+)
RNA-Seq ExpressionLsi04G006720
SyntenyLsi04G006720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCTTCTCTCAGATTTTCAGAGCCGTGGTTTAGTGAGGACGGAACAAGGAAGTCTAGGGCATTGTATCCTTTTGCCGCGAATTATTTGGGAATTGTTTTAAAGCTTAATACGTATGAAAATCCCGACCCGTCTCATTTTCTATTTATGTATTGGAATGCCTGAGATACGAGGTTATAACAGAAATAGAATAGTAAAACGTGAAAACGATGGAAATGAAGATTTGGTTAAAAACTGTCCGAACGGAATGAGTTTAATATTACAAATTGAACTCAAAACACTCAATCCAAACATAAGTTTTGGGTTACATTACAATCAAAACTCATTCCATGCACCCAAACAACTTCTTATAATTTTCTAAAAAATAAAAAAGAAACAACACACCCCTCAAATAGTATAAACAAATAAAGGGTGTTTGGCGTCAAAATGAGCTTTGTTTAATTACACTTAAGTTGGTATTAAATAACAACTCCACCAACTGCAATAATGTTCTATATTTACACTATTAAAATTTGCAAGTTTATCAAAAAATTTCATCTTCTCCTCTCTTTTTTGTACATTTGTCGATGAACTTTATCTTCATAGCTTTGCATTCAAACACTAACTTCATAACTTCAGACTTCACAAGTCAACTTAACGCCTCAAACATCCCCTAAGTTGTCTGTAAAAGTGAAATTTGTTTCAAGAAAAAAAACATAATTTAACTAAATCTTTATTCTAAAAACACATAAAATTAGTTTTCAAAAGACTTCCAAACAAGTCTTAAGAACGGTTAATACCAGTATTCAAACTCTAAAATTTAAATTTAGATTATATATAAAAATAATTTGATAGATAGTTATTTCCTATAACTTTGAGTAATTTGTCTTTAAATTCAAATCGTCCACATATAATTAATCATATAAAAAAAATTAGTGAAAAATTTAGGAAAATTACTATAAACAGAAAAAATATCAAACTATTTACAAATATAGACAAATTTCATTGTCTATCAATAATAGACCGCGATAGAATTCTTATCGTTTTCTATCGCTCAAGCAAATTAATTATATCGCTTGAGGGACAGAAAGCGATAGAATTTTGTCGCGGTCTATCACCGATAGACTGTGAAATTTTTCTATACTTGTAAATAGTTTGGCTCATTTTTTTATATTTGAAAAGAGCCCAAAAATTTAACTATTTAATAAAACCTTTTCATATTGGGAAATTTTTAAAAATAGAAAAATAACAAAATTTTTAGATAGTTGTGATAAACACTGATAGAAGTCTATTAGGATCTATCAGTGATAGAATTGATAGACTTCTATCAGCATCGGATAGAAGTCTATCAATGTCTATCAGTGTTTCTTTTGATATTTTCTGTAAATAGTTTGACATTTTTTCTACTCGTGAAAAATTTTCTTTTATATTAGGTATTTAAGTTAATTAATTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTACAAAGTTTCCGTAGAGAATCCCCACCCCCAATCCCATCGAGACTAAAAGAAAAATTTCACGGGAGAATTTTAAAAACAAAAAGAAAACAAAACAAGGACAAATTTTTTGCGGAGAATCATCACCCCAATCTTCCCCAAATTAAATGCAAACTTTAATGGGGATACAAATGAAATGGGAAGCCAAAAAGATATCCCTAGCCTGTGGACATCTCTAAGGTTGGGAACTTCAAACATGTTGATGCGAAATAAATATTATTATTGAATATATTTAAATTGTTATTTAATAAAAAATACTTTGGTGCATCTTGGGGTGCACCCATTTTCGTGAAGTTCACTCAACTATCTAATCACAAGTTCGTCATGTACTAAGTATTACTCTTATTTAATTGAAAAAGATAACCACTAACTGTTCATAAAAATATAAGGTAACCATCATTAATCATATACTGGTGAGCGTGATGCACATAGATAGTAGAGTGAAAAAAATATTTAGTATTATGATAGCACATACTTCTTGCCTTCGTCATTTGAAACATCATTAAATTACATGTTAATTAATTCACATGTCTCACACGATTCTTGACTATGTCTTTTATAGCATTATAAAAGGTGTGGAGAGGAAGGAGACTGAATACTTTGTTTATTCTTGGTTTATATACTATTTTTGTCCCATATTTTTTATTTTGGTTCATTTTAGTTCATCTACTCTCAAAATATTCATTTTGTTCCTTATACATTTTAAAAATTACAATTTTAGTCATTTCATTTTTAAGAGATAGAAATGAATATTTTTTGAAAATTCAAAGACCAAAATGAACAAAAGTTGAGAATACAAGGACCAAATTGAATAAAGTAGAAGGACCAAAATGAACAAAAGTTGAAAGTAGAGGGATCAAATAAACATCACGAAAGTAAAGAGATTAAAATAAACCAAATGAAAAAATATAAAGACCAAAGTAATATTTAAACTTTTATTCTTCGCATATGATTTTTTTTTTTTAATTTTAAATTTAGAAGGCAAAAAGTAAACAGTTGGAATATATATATTATCTCTGCATCTGCCCCTCCTCTCTCCTCTCGGTCTAAAACTATCCACTATGCAATATGTGTTAGTAACAAGGAGTCCATGGTTCAAATCCCCCACTCTTATTATATTATTTCTAAAAAATTATTTCTAAAAAATGAATAAATAAAAACTAGTACCTACTTCATATATCTAAATCCAACTACACAAAAACAGTCGGTGAAATTGGTTTGAACATTCTTAAATGAACCCAAAGCCTCTGTCAACTTCATTGCAGAATAAAAATAATCACTATTGTTCTTCTGTTTTGGAGTTTTTGGCACAAGACTCTAATTTCACCCTGTGACAAATTAAGCAAATGCACCTTATACAAAACACAACAGCTTTCATACTGAAGCCTGAAGAAACATATAAAAAGCTACAAATTCCAGTCAACTCAAATCGATGAATTCTACTCACAGATATCGTAATCGTTTTTTGTTGGCATATGGAGCAAACATTCACTAACAAAAAAATTCCAAACAGAACATATCCTTCTCATTCTCATTTATTTATCATAATAAAACTAGCAAATGTCACAAGAAAAAATAAAAGAGGAAGAAATAAGCTGATAAACTTTGCAAGAAGAAAGAATAGCATTCTAAATTATAAAGGAGAAATTTTCATAAAAAAAGTACATATAACAACACAAAGGAGAATGAATCCCACCATTTGTAATGAGAAACTAATAGAAAGGTAAGGATCTATTCTCTAATTTCCTTTTTTATTTTTTTCATGACATGGTTTTAGCTGAATACTATTAGTTTATGCTATAGAATCAATATAAATGTTTCCTTTTATCCGACATTGAAAACAAAGGGAAAAAAACTATACAAAACCTCTATCCCAGAATAAGAAACATGATCTAAACCAGTAAGAACATGGAACACCAAAAGATTTCCGACTGATATAGAATTTTTAATGAATGTTCAGTACTCGATTAAATAATAGCATTGGAAACATCCATCGTCTTAACATGACGAGACAATATCTGCTTAATCTGGAGTCACGACCAAATAATAATTTCAGAAATTCCTTAGAAATACATCTATCTTAACAAGGCTGAGTGCACTACATCAGAAACCCCTCCCTCATAATCATAGCCAAAAGGTCTGAAGGGGGTAACACTATCCATCTTATAATATCTGAAGGCTAGTAAAGCCACTAACTATTTACACTATGTTGGATAACAATTTCGTTTTTGATTTTTTGTTATTGAAATTTATGTTTGTTTCCTTCCAATTTTTCAATTATAATTTTCACGTTTATCCAAGAAACATTTGAATTGCTAATCAAATTCTGAAAACCAAAACAAGTATTTGAAAACTACCTTTTTTTTTAGTTTCCAAAACTTGGCTTGGTTTTTAAAAGCAACAGCAGAGAGTGGATAACAAAGCATAGAAACTATGGGGTAAAAATAGTGTTTATAATCTTAATTTTCAAAAGTCAAATGGTTATCAAACAAGACTTTAATGTTCTAGTTATGTAGTTCAAGTAAGATGAACACATGATCTCCTGATTGAATCCAAAGACTTTCAGCCCTGATTCCCCTTGGAGTAGTTAATCAGCAAATAAACCCAAAGAATAACTCAAAATTCACACAAATCATATTGCAGAATGCCTTCAAAAACTCAAGCAGATAAAAGAGTGCAAGAATGCCAATTTCACAATAGTGCAGACTAACTTCAGAGCCAAGCTCTAGTCCACCATTTATCATATGTGAATATTGTACATACAAGCAAAACGTCATAGAAATAGCATATAATGTACCGATAATGTAAATTGCTAACTCAAAATCCACACAAATCATATTGCAGAATGCCTTCAAAAACTCAAGCAGATAAAAGAATGCAAGAATGCCAATTTCACAATAGTGCAGACTAACTTCAGAGCCAAGCTCTAGTCCACCATTTATCATATGTGAATATTGTACATACAAGCAAAACGTCATAGAAATAGCATATAATGTACCGATAATGTAAATTGCTAACTCAAAATCCACACAAATCATATTGCAGAATGCCTTCAAAAACTCAAGCAGATAAAAGAATGCAAGAATGCCAATTTCACAATAGTGCAGACTAACTTCAGAGCCAAGCTCTAGTCCACCATTTATCATATGTGAATATTGTACATACAAGCAAAACGTCATAGAAATAGCATATAATGTACCGATAATGTAAATTGCAATGATATCATATGGGTTTCCTTGACACCCAAATATTGTAGGGTCAAGTGGGTTGTCCCGTGAGATTAGAGCTGGCCTGGACACTCACAGATATTTTTAAAAAAAAATTGTAAATTGCAATGCCTTCCTGAATATTATGATGTGCGGATGACAATCTGTGAAGGCAATATTCATCCTCTGTATGAATTAATTCAGTTTAGTTTCAAAGCTCTTCACATGTATATTATAATAACCAGGGAACAGCAGCAAGCAAACAATAACTTATAATTACGACAATATAAACATGTTCGATTATGATCTAATCTATTTTAACCATAGAACAGAAAAAACACAATGGTTCTCTTTCCATAACAACCAAAGTAAAGCAATAGGCAAGGGCATTAAAGAGATCTGTCTTTCTCTAAACCTTCAAAATTATAATCCATATAACGAGTGTATGTATCATCATTTTGGGGACATTAGAAATTCAATGGTTCAAACTGTATGTTAATACAAGAACAACGTCAATTAAACTGACCTACTTCTTGGCAGGTTTCTTCTTCAAAACCACAGGCTCCTGCGGTTGCGGCTTAGGGTATTTTTCAGCCACACTAGGATCCAACCACTTGAGCGGGTGGCGATTGAAGAAAGGCCAATTCGGAACAGTGATTAATGTGGTGAGAAACACACCGCCAGCGTAAACCAAGATCATCAGCCGAAACGATCCCATAACATAGCCAGTCAAAAAGGCCACCACGGCAAATGCAACCAACATAATCTGCATCAACTGCTCCGCTAGCTTTTGCCCTTGCCAGTCCATCTAAAACATGGAAAACAAGAAGATAATCGTCAGATCCAACCCGGAAGGAGGCGTAGAACGCCAATGAAGAAAGATTAGTCATAACTCCATAGGAAGATTTAACTATAACGAAAATCCCTAGCTACCTGGAGAAATGAAAATCCTAGGCGCTACGAAGAAAGATTTAGAAATATACAAATGAAGCTAGAAGGAATTTGAAAACTGAGATAGGGAGAGTAATAACCTGTCGGCGAATTTGGAGACGACGATGTTAAGTCCAAAGGGGAATGATCAGCTGGAGGAAACGATGATATGTCAATTGATTTCTGGAATCAGACGAATAGTGCAGAGCGGTATGTATTTACCGGTCCTGATTCGGAAGAATTCACACGTAAAATCTCAGCCGTCCGATGA

mRNA sequence

ATGGTGCTTCTCTCAGATTTTCAGAGCCGTGGTTTAGTGAGGACGGAACAAGGAAGTCTAGGGCATTGGTCAAGTGGGTTGTCCCGTTTCTTCTTCAAAACCACAGGCTCCTGCGGTTGCGGCTTAGGGTATTTTTCAGCCACACTAGGATCCAACCACTTGAGCGGGTGGCGATTGAAGAAAGGCCAATTCGGAACAGTGATTAATGTGACGAATAGTGCAGAGCGGTATGTATTTACCGGTCCTGATTCGGAAGAATTCACACGTAAAATCTCAGCCGTCCGATGA

Coding sequence (CDS)

ATGGTGCTTCTCTCAGATTTTCAGAGCCGTGGTTTAGTGAGGACGGAACAAGGAAGTCTAGGGCATTGGTCAAGTGGGTTGTCCCGTTTCTTCTTCAAAACCACAGGCTCCTGCGGTTGCGGCTTAGGGTATTTTTCAGCCACACTAGGATCCAACCACTTGAGCGGGTGGCGATTGAAGAAAGGCCAATTCGGAACAGTGATTAATGTGACGAATAGTGCAGAGCGGTATGTATTTACCGGTCCTGATTCGGAAGAATTCACACGTAAAATCTCAGCCGTCCGATGA

Protein sequence

MVLLSDFQSRGLVRTEQGSLGHWSSGLSRFFFKTTGSCGCGLGYFSATLGSNHLSGWRLKKGQFGTVINVTNSAERYVFTGPDSEEFTRKISAVR
Homology
[Close]
BLAST of Lsi04G006720 vs. ExPASy TrEMBL
Match: I3T4X6 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-05
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 30 FFFKTTGSCGCGLGYFSATLGSNHLSGWRLKKGQFGTVINVTNS 74
          FFF  T + GCGLG FS +LGS+H  GWRLK+GQ GTV +V  +
Sbjct: 11 FFFGATFTDGCGLGCFSTSLGSSHFRGWRLKRGQLGTVTSVVKT 54

[Close]
BLAST of Lsi04G006720 vs. NCBI nr
Match: AFK47568.1 (unknown [Lotus japonicus])

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-05
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 0 

Query: 30 FFFKTTGSCGCGLGYFSATLGSNHLSGWRLKKGQFGTVINVTNS 74
          FFF  T + GCGLG FS +LGS+H  GWRLK+GQ GTV +V  +
Sbjct: 11 FFFGATFTDGCGLGCFSTSLGSSHFRGWRLKRGQLGTVTSVVKT 54

The following BLAST results are available for this feature:
BLAST of Lsi04G006720 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G006720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
I3T4X62.9e-0559.09Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
BLAST of Lsi04G006720 vs. NCBI nr
Match NameE-valueIdentityDescription
AFK47568.16.0e-0559.09unknown [Lotus japonicus][more]
BLAST of Lsi04G006720 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G006720.1Lsi04G006720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane