Lsi04G005870 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G005870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ABC transporter B family member 26
Location	chr04: 5382952 .. 5383440 (+)
RNA-Seq Expression	Lsi04G005870
Synteny	Lsi04G005870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCGTTCATTTGCAATATACAAGTTCCTCGTCCCAATCTTTTGCTTTCTCGCCAGCTTCATGTCGATAAAATTCGCTCTCGAGGACTTCCTTTCACCAACGATAAGGTTCTGCGGTGGAATCATTTCTCAATCAATTGTCGATTCCTCTTACCTCCTCCGAAGTCAGCCATTAACGGATATGGAATCTCGGTCCCGAGTTCTTCGGAAGAGCGAGAAGAAGGCCATGGCGAAGCTGAGTTTGATATTGTAGATAAGCTTTGGGGATTGCTTGGCAATCTACGTTCGATTTTGCCTGGTGGGAGCTGGTGGAGCTTATCCGATGAAGCTGAAGTCAGAATTTCGGTTGAGCCAGTGACTGTGACGCGGGCTCTTGGCAGGATGTGGGACCTGGTTGCTAGAGACCGTTGGATCATCTACTCCGCATTTTCTGTTTTGGTTATTGCGGCGGTCTCTCTCTCTCTCTCTCCCTCTCTCCCGCTCTAG

mRNA sequence

ATGTCTTCGTTCATTTGCAATATACAAGTTCCTCGTCCCAATCTTTTGCTTTCTCGCCAGCTTCATGTCGATAAAATTCGCTCTCGAGGACTTCCTTTCACCAACGATAAGGTTCTGCGGTGGAATCATTTCTCAATCAATTGTCGATTCCTCTTACCTCCTCCGAAGTCAGCCATTAACGGATATGGAATCTCGGTCCCGAGTTCTTCGGAAGAGCGAGAAGAAGGCCATGGCGAAGCTGAGTTTGATATTGTAGATAAGCTTTGGGGATTGCTTGGCAATCTACGTTCGATTTTGCCTGGTGGGAGCTGGTGGAGCTTATCCGATGAAGCTGAAGTCAGAATTTCGGTTGAGCCAGTGACTGTGACGCGGGCTCTTGGCAGGATGTGGGACCTGGTTGCTAGAGACCGTTGGATCATCTACTCCGCATTTTCTGTTTTGGTTATTGCGGCGGTCTCTCTCTCTCTCTCTCCCTCTCTCCCGCTCTAG

Coding sequence (CDS)

ATGTCTTCGTTCATTTGCAATATACAAGTTCCTCGTCCCAATCTTTTGCTTTCTCGCCAGCTTCATGTCGATAAAATTCGCTCTCGAGGACTTCCTTTCACCAACGATAAGGTTCTGCGGTGGAATCATTTCTCAATCAATTGTCGATTCCTCTTACCTCCTCCGAAGTCAGCCATTAACGGATATGGAATCTCGGTCCCGAGTTCTTCGGAAGAGCGAGAAGAAGGCCATGGCGAAGCTGAGTTTGATATTGTAGATAAGCTTTGGGGATTGCTTGGCAATCTACGTTCGATTTTGCCTGGTGGGAGCTGGTGGAGCTTATCCGATGAAGCTGAAGTCAGAATTTCGGTTGAGCCAGTGACTGTGACGCGGGCTCTTGGCAGGATGTGGGACCTGGTTGCTAGAGACCGTTGGATCATCTACTCCGCATTTTCTGTTTTGGTTATTGCGGCGGTCTCTCTCTCTCTCTCTCCCTCTCTCCCGCTCTAG

Protein sequence

MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAINGYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYSAFSVLVIAAVSLSLSPSLPL

Homology

[Close]

BLAST of Lsi04G005870 vs. ExPASy Swiss-Prot
Match: Q8RY46 (ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABCB26 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-21
Identity = 56/131 (42.75%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 24  DKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPK-SAINGYGISVPSSSEEREEGHGEAEF 83
           D IR + L F  +  L ++  S    + LP    S +NG      + + E  EG G+   
Sbjct: 27  DTIRRKNLRFVRNPRLSFSLQSSTRNYRLPSINCSTVNG----AVAETAEYYEGEGD-NV 86

Query: 84  DIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYS 143
            + +K+   +  LR+ILPGGSWWS SDE + R   +PVTV RAL RMW+LVA DRW+I++
Sbjct: 87  SLAEKIRQCIDFLRTILPGGSWWSFSDEVDGRFIAKPVTVWRALSRMWELVAEDRWVIFA 146

Query: 144 AFSVLVIAAVS 154
           AFS L++AA+S
Sbjct: 147 AFSTLIVAALS 152

[Close]

BLAST of Lsi04G005870 vs. ExPASy TrEMBL
Match: A0A5A7SWM5 (ABC transporter B family member 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001400 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.3e-73
Identity = 139/153 (90.85%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAIN 60
           MSSFICNIQVP PNLLLSRQLHVDKIRS+GL FT++K LRWNH S +CRFLLPP KSAIN
Sbjct: 1   MSSFICNIQVPHPNLLLSRQLHVDKIRSQGLTFTDNKALRWNHLSTDCRFLLPPLKSAIN 60

Query: 61  GYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPV 120
           GYGISVPSSSEEREE HGEAEFDIVDKL GLLG+LRSILPGGSWWSLSDEAEVRISVEPV
Sbjct: 61  GYGISVPSSSEEREESHGEAEFDIVDKLRGLLGHLRSILPGGSWWSLSDEAEVRISVEPV 120

Query: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS 154
           TVTRALGRMWDLVARDRWIIYSAFSVLVIAA+S
Sbjct: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAALS 153

[Close]

BLAST of Lsi04G005870 vs. ExPASy TrEMBL
Match: A0A1S3BDX4 (ABC transporter B family member 26, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488972 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.3e-73
Identity = 139/153 (90.85%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAIN 60
           MSSFICNIQVP PNLLLSRQLHVDKIRS+GL FT++K LRWNH S +CRFLLPP KSAIN
Sbjct: 1   MSSFICNIQVPHPNLLLSRQLHVDKIRSQGLTFTDNKALRWNHLSTDCRFLLPPLKSAIN 60

Query: 61  GYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPV 120
           GYGISVPSSSEEREE HGEAEFDIVDKL GLLG+LRSILPGGSWWSLSDEAEVRISVEPV
Sbjct: 61  GYGISVPSSSEEREESHGEAEFDIVDKLRGLLGHLRSILPGGSWWSLSDEAEVRISVEPV 120

Query: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS 154
           TVTRALGRMWDLVARDRWIIYSAFSVLVIAA+S
Sbjct: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAALS 153

[Close]

BLAST of Lsi04G005870 vs. ExPASy TrEMBL
Match: A0A0A0KVH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598690 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.6e-72
Identity = 138/153 (90.20%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAIN 60
           MSSFICNIQVP PNLLL RQLHVDKIRSRGL FT++K+LRWNH SI+CRFLLPP KSAIN
Sbjct: 1   MSSFICNIQVPHPNLLLLRQLHVDKIRSRGLTFTDNKILRWNHLSIDCRFLLPPLKSAIN 60

Query: 61  GYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPV 120
           GYGISVPSSSEEREE  GEAEFDIVDKL GLLG+LRSILPGGSWWSLSDEAEVRISVEPV
Sbjct: 61  GYGISVPSSSEEREESRGEAEFDIVDKLRGLLGHLRSILPGGSWWSLSDEAEVRISVEPV 120

Query: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS 154
           TVTRALGRMWDLV+RDRWIIYSAFSVLVIAA+S
Sbjct: 121 TVTRALGRMWDLVSRDRWIIYSAFSVLVIAALS 153

[Close]

BLAST of Lsi04G005870 vs. ExPASy TrEMBL
Match: A0A6J1G219 (ABC transporter B family member 26, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449968 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.3e-66
Identity = 126/153 (82.35%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAIN 60
           MS+FICN+QVPRP+L L R+    +IRSRG PF N K+LR NHFSINCRFLLPPPKSAIN
Sbjct: 1   MSTFICNLQVPRPHLSLYRKQRAARIRSRGFPFINSKILRSNHFSINCRFLLPPPKSAIN 60

Query: 61  GYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPV 120
           GYGISVPSSSEERE GHGE EFDI+ KL GL+GNLRSILPGGSWWSLSDE EVRISVEPV
Sbjct: 61  GYGISVPSSSEEREAGHGEVEFDILHKLRGLIGNLRSILPGGSWWSLSDEDEVRISVEPV 120

Query: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS 154
           TVTRALG+MWDLVARDRWII++AFSVLVIAA+S
Sbjct: 121 TVTRALGKMWDLVARDRWIIFTAFSVLVIAALS 153

[Close]

BLAST of Lsi04G005870 vs. ExPASy TrEMBL
Match: A0A6J1HT83 (ABC transporter B family member 26, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466389 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.6e-65
Identity = 123/153 (80.39%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAIN 60
           MS+FICN+QVPRP+L L R+ H  +IRSRG PF N K+LR N+FSINCRFLLPPPKSAIN
Sbjct: 1   MSTFICNLQVPRPHLSLYRKQHAARIRSRGFPFINSKILRSNNFSINCRFLLPPPKSAIN 60

Query: 61  GYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPV 120
           GYGISVPSSSEERE GH E EFDI+ KL GL+G++RSILPGGSWWSLSDE EVRISVEPV
Sbjct: 61  GYGISVPSSSEEREAGHDEVEFDILHKLRGLIGHVRSILPGGSWWSLSDEDEVRISVEPV 120

Query: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS 154
           TVTRALG+MWDLVARDRWII++AFSVLVIAA+S
Sbjct: 121 TVTRALGKMWDLVARDRWIIFTAFSVLVIAALS 153

[Close]

BLAST of Lsi04G005870 vs. NCBI nr
Match: XP_038893200.1 (ABC transporter B family member 26, chloroplastic [Benincasa hispida])

HSP 1 Score: 297.4 bits (760), Expect = 7.7e-77
Identity = 144/153 (94.12%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAIN 60
           MSSFICN QVPRPNLLLSRQLHVDKIRSRG PFTN+KVLRW+HFSINCRFLLPPPKSAIN
Sbjct: 1   MSSFICNTQVPRPNLLLSRQLHVDKIRSRGFPFTNNKVLRWDHFSINCRFLLPPPKSAIN 60

Query: 61  GYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPV 120
           GYGISVPSSSEEREEGHGEAEFDIVDKL  LLG+LRSILPGGSWWSLSDEAEVRISV+PV
Sbjct: 61  GYGISVPSSSEEREEGHGEAEFDIVDKLRALLGHLRSILPGGSWWSLSDEAEVRISVQPV 120

Query: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS 154
           TVTRALGRMWDLVARDRWIIYSAFSVLVIAA+S
Sbjct: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAALS 153

[Close]

BLAST of Lsi04G005870 vs. NCBI nr
Match: XP_008446165.1 (PREDICTED: ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 8.8e-73
Identity = 139/153 (90.85%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAIN 60
           MSSFICNIQVP PNLLLSRQLHVDKIRS+GL FT++K LRWNH S +CRFLLPP KSAIN
Sbjct: 1   MSSFICNIQVPHPNLLLSRQLHVDKIRSQGLTFTDNKALRWNHLSTDCRFLLPPLKSAIN 60

Query: 61  GYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPV 120
           GYGISVPSSSEEREE HGEAEFDIVDKL GLLG+LRSILPGGSWWSLSDEAEVRISVEPV
Sbjct: 61  GYGISVPSSSEEREESHGEAEFDIVDKLRGLLGHLRSILPGGSWWSLSDEAEVRISVEPV 120

Query: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS 154
           TVTRALGRMWDLVARDRWIIYSAFSVLVIAA+S
Sbjct: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAALS 153

[Close]

BLAST of Lsi04G005870 vs. NCBI nr
Match: KAA0034276.1 (ABC transporter B family member 26 [Cucumis melo var. makuwa] >TYK15643.1 ABC transporter B family member 26 [Cucumis melo var. makuwa])

HSP 1 Score: 283.9 bits (725), Expect = 8.8e-73
Identity = 139/153 (90.85%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAIN 60
           MSSFICNIQVP PNLLLSRQLHVDKIRS+GL FT++K LRWNH S +CRFLLPP KSAIN
Sbjct: 1   MSSFICNIQVPHPNLLLSRQLHVDKIRSQGLTFTDNKALRWNHLSTDCRFLLPPLKSAIN 60

Query: 61  GYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPV 120
           GYGISVPSSSEEREE HGEAEFDIVDKL GLLG+LRSILPGGSWWSLSDEAEVRISVEPV
Sbjct: 61  GYGISVPSSSEEREESHGEAEFDIVDKLRGLLGHLRSILPGGSWWSLSDEAEVRISVEPV 120

Query: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS 154
           TVTRALGRMWDLVARDRWIIYSAFSVLVIAA+S
Sbjct: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAALS 153

[Close]

BLAST of Lsi04G005870 vs. NCBI nr
Match: XP_004135488.1 (ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis sativus] >KGN51761.1 hypothetical protein Csa_007938 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 3.4e-72
Identity = 138/153 (90.20%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAIN 60
           MSSFICNIQVP PNLLL RQLHVDKIRSRGL FT++K+LRWNH SI+CRFLLPP KSAIN
Sbjct: 1   MSSFICNIQVPHPNLLLLRQLHVDKIRSRGLTFTDNKILRWNHLSIDCRFLLPPLKSAIN 60

Query: 61  GYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPV 120
           GYGISVPSSSEEREE  GEAEFDIVDKL GLLG+LRSILPGGSWWSLSDEAEVRISVEPV
Sbjct: 61  GYGISVPSSSEEREESRGEAEFDIVDKLRGLLGHLRSILPGGSWWSLSDEAEVRISVEPV 120

Query: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS 154
           TVTRALGRMWDLV+RDRWIIYSAFSVLVIAA+S
Sbjct: 121 TVTRALGRMWDLVSRDRWIIYSAFSVLVIAALS 153

[Close]

BLAST of Lsi04G005870 vs. NCBI nr
Match: KAG6573712.1 (ABC transporter B family member 26, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264.6 bits (675), Expect = 5.5e-67
Identity = 126/153 (82.35%), Postives = 139/153 (90.85%), Query Frame = 0


Query: 1   MSSFICNIQVPRPNLLLSRQLHVDKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPKSAIN 60
           MS+FICN+QVPRP+L L R+ H  +IRSRG PF N K+LR NHFSINCRFLLPPPKSAIN
Sbjct: 1   MSTFICNLQVPRPHLSLYRKQHAARIRSRGFPFINSKILRSNHFSINCRFLLPPPKSAIN 60

Query: 61  GYGISVPSSSEEREEGHGEAEFDIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPV 120
           GYGISVPSSSEERE GHGE EFDI+ KL GL+GNLRSILPGGSWWSLSDE EVR+SVEPV
Sbjct: 61  GYGISVPSSSEEREAGHGEVEFDILHKLRGLIGNLRSILPGGSWWSLSDEDEVRLSVEPV 120

Query: 121 TVTRALGRMWDLVARDRWIIYSAFSVLVIAAVS 154
           TVTRALG+MWDLVARDRWII++AFSVLVIAA+S
Sbjct: 121 TVTRALGKMWDLVARDRWIIFTAFSVLVIAALS 153

[Close]

BLAST of Lsi04G005870 vs. TAIR 10
Match: AT1G70610.1 (transporter associated with antigen processing protein 1 )

HSP 1 Score: 102.8 bits (255), Expect = 2.6e-22
Identity = 56/131 (42.75%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 24  DKIRSRGLPFTNDKVLRWNHFSINCRFLLPPPK-SAINGYGISVPSSSEEREEGHGEAEF 83
           D IR + L F  +  L ++  S    + LP    S +NG      + + E  EG G+   
Sbjct: 27  DTIRRKNLRFVRNPRLSFSLQSSTRNYRLPSINCSTVNG----AVAETAEYYEGEGD-NV 86

Query: 84  DIVDKLWGLLGNLRSILPGGSWWSLSDEAEVRISVEPVTVTRALGRMWDLVARDRWIIYS 143
            + +K+   +  LR+ILPGGSWWS SDE + R   +PVTV RAL RMW+LVA DRW+I++
Sbjct: 87  SLAEKIRQCIDFLRTILPGGSWWSFSDEVDGRFIAKPVTVWRALSRMWELVAEDRWVIFA 146

Query: 144 AFSVLVIAAVS 154
           AFS L++AA+S
Sbjct: 147 AFSTLIVAALS 152

The following BLAST results are available for this feature:

BLAST of Lsi04G005870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RY46	3.7e-21	42.75	ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Lsi04G005870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWM5	4.3e-73	90.85	ABC transporter B family member 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BDX4	4.3e-73	90.85	ABC transporter B family member 26, chloroplastic isoform X1 OS=Cucumis melo OX=...	[more]
A0A0A0KVH9	1.6e-72	90.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598690 PE=4 SV=1	[more]
A0A6J1G219	1.3e-66	82.35	ABC transporter B family member 26, chloroplastic isoform X1 OS=Cucurbita moscha...	[more]
A0A6J1HT83	5.6e-65	80.39	ABC transporter B family member 26, chloroplastic isoform X1 OS=Cucurbita maxima...	[more]

BLAST of Lsi04G005870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893200.1	7.7e-77	94.12	ABC transporter B family member 26, chloroplastic [Benincasa hispida]	[more]
XP_008446165.1	8.8e-73	90.85	PREDICTED: ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis...	[more]
KAA0034276.1	8.8e-73	90.85	ABC transporter B family member 26 [Cucumis melo var. makuwa] >TYK15643.1 ABC tr...	[more]
XP_004135488.1	3.4e-72	90.20	ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis sativus] >...	[more]
KAG6573712.1	5.5e-67	82.35	ABC transporter B family member 26, chloroplastic, partial [Cucurbita argyrosper...	[more]

BLAST of Lsi04G005870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70610.1	2.6e-22	42.75	transporter associated with antigen processing protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24222:SF64	ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC	coord: 79..153
None	No IPR available	PANTHER	PTHR24222	ABC TRANSPORTER B FAMILY	coord: 79..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G005870.1	Lsi04G005870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding