Lsi04G005610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G005610
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	axial regulator YABBY 4
Location	chr04: 5114851 .. 5116128 (-)
RNA-Seq Expression	Lsi04G005610
Synteny	Lsi04G005610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTCAGTGTGCCATGTAGCAGCTTGTCGATGGCGGTCACCGTGACGTGTGGCCATTGCTCAAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGGTATTTGGAGATTTTTCTTCTTTAATTTTGATTCAATACTCATTATTTTTTGTGCTGTGTTAAAAGATAAAAGTTTTTTTTTCCCCCTTTGTCCTTTCTCAGCCCAAAGTAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTTTGACAGTTTCAAAAGATCAAACTTGAAATTTTCCGAGTATGAAGTTGAAGAAAACTTGATTCCTGTGATTCCTCCTTTTGTAAACAAACGTAAGAACATTGGCAATTAGACTTACAATTACAATAAGATGAACAAATCTGAAATTTATTAAGTTAATAATATATTTTCCATTGAATGATCATTATGAAGCTCCTGAGAAAAGACAGCGTGCTCCATCAGCATACAATTGTTTCATCAAGTAAGATATCAAAGTTTCATATTTTTTACTGATCTTATCATGAGTTTAGGATGACTTTTTTAAAAAAATGCTTAAATGAAAGTACTTCAAGAAGCACTTTTAGGAGTGTTTCTCCTAAAAGAACAGATTCCAAGTACTTTTCAATCTAATTCTGTTTGTATTTGGGACAGGGATGAAATCAGAAGGCTCAAAGCTCAAAATCCTGAAATGACACACAAGGAGGCCTTTAGAACAGCTGCAAAAAATGTAAGCAATAGTCTCCAGTCAACTTAATTAAGATCTAATTAGGATCAATATGTTAAATCCATAAATGATTTTGATTTTTCAGTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGATGCAGAGAGCTGTAATCAGATTGAGGGAAATGGGAGTTGGAACACTCAAATTCCTGAGGTAAAAATACAAACTTTGTGATAAAAAGTTATGATATTCAATAAACACTTCAAACCCATTACAGCAAATGAAAAAGTTGTATGAAATGATGAATCTTTATCAATCATTCATAACAATATTTGAGAAAATGCTCCTTTTCCAAAGCCATTGAACAACCCCAAGACAAATTTATGAGACTGCCATTAAAGGGGTAGGAGCATTGAGTGCAAAGCTTATAATATTGAAGAAATTGGGCAATTTTAAGCAACATTATGATGAGTTTTTTGTGTTTTGAAATTTCTTTTCAGGTTCACAAGGATGGAAAGTGTTTCCCAAGGCATTCATTTTTGACATAA

mRNA sequence

ATGCAGGTCAGTGTGCCATGTAGCAGCTTGTCGATGGCGGTCACCGTGACGTGTGGCCATTGCTCAAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGTAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTTTGACAGTTTCAAAAGATCAAACTTGAAATTTTCCGAGTATGAAGTTGAAGAAAACTTGATTCCTGTGATTCCTCCTTTTGTAAACAAACCTCCTGAGAAAAGACAGCGTGCTCCATCAGCATACAATTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCAAAATCCTGAAATGACACACAAGGAGGCCTTTAGAACAGCTGCAAAAAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGATGCAGAGAGCTGTAATCAGATTGAGGGAAATGGGAGTTGGAACACTCAAATTCCTGAGGTTCACAAGGATGGAAAGTGTTTCCCAAGGCATTCATTTTTGACATAA

Coding sequence (CDS)

ATGCAGGTCAGTGTGCCATGTAGCAGCTTGTCGATGGCGGTCACCGTGACGTGTGGCCATTGCTCAAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGTAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTTTGACAGTTTCAAAAGATCAAACTTGAAATTTTCCGAGTATGAAGTTGAAGAAAACTTGATTCCTGTGATTCCTCCTTTTGTAAACAAACCTCCTGAGAAAAGACAGCGTGCTCCATCAGCATACAATTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCAAAATCCTGAAATGACACACAAGGAGGCCTTTAGAACAGCTGCAAAAAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGATGCAGAGAGCTGTAATCAGATTGAGGGAAATGGGAGTTGGAACACTCAAATTCCTGAGGTTCACAAGGATGGAAAGTGTTTCCCAAGGCATTCATTTTTGACATAA

Protein sequence

MQVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFDSFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTHKEAFRTAAKNWANFPPIQEKEDAESCNQIEGNGSWNTQIPEVHKDGKCFPRHSFLT

Homology

[Close]

BLAST of Lsi04G005610 vs. ExPASy Swiss-Prot
Match: Q9LDT3 (Axial regulator YABBY 4 OS=Arabidopsis thaliana OX=3702 GN=YAB4 PE=1 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 3.2e-34
Identity = 87/164 (53.05%), Postives = 109/164 (66.46%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREM--NSGKF 62
           VSVP +SLSM VTV CGHC+SLLSVN+MKA+ +PLH L+SLS ++ +    E+    G  
Sbjct: 35  VSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLS-HLDETGKEEVAATDGVE 94

Query: 63  FDSFKRSNLK-------FSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRL 122
            +++K +  K        S  + E+  +  +   VNKPPEKRQRAPSAYNCFIK+EIRRL
Sbjct: 95  EEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRL 154

Query: 123 KAQNPEMTHKEAFRTAAKNWANFPPIQEKEDA-ESCNQIEGNGS 157
           KAQNP M HKEAF  AAKNWA+FPP   K  A + C   E N +
Sbjct: 155 KAQNPSMAHKEAFSLAAKNWAHFPPAHNKRAASDQCFCEEDNNA 197

[Close]

BLAST of Lsi04G005610 vs. ExPASy Swiss-Prot
Match: Q8GW46 (Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 8.6e-24
Identity = 69/140 (49.29%), Postives = 85/140 (60.71%), Query Frame = 0


Query: 1   MQVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSR-NVPKVACREMNSGK 60
           + V+VPCSSL   VTV CGHC++L SVNM  A       L SLSR N           G 
Sbjct: 23  LAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAA-------LQSLSRPNFQATNYAVPEYGS 82

Query: 61  FFDSFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPE 120
              S  +   + S   + E  I      VN+PPEKRQR PSAYN FIK+EI+R+KA NP+
Sbjct: 83  SSRSHTKIPSRISTRTITEQRI------VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPD 142

Query: 121 MTHKEAFRTAAKNWANFPPI 140
           ++H+EAF TAAKNWA+FP I
Sbjct: 143 ISHREAFSTAAKNWAHFPHI 149

[Close]

BLAST of Lsi04G005610 vs. ExPASy Swiss-Prot
Match: A2PZN8 (Protein YABBY 7 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB7 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-23
Identity = 61/146 (41.78%), Postives = 86/146 (58.90%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFD 62
           VSVPCSS+   V V CGHCS +LS     A  +P   +S+     P+        G++ D
Sbjct: 30  VSVPCSSVLRVVAVQCGHCSGILS-----AVNLPPSPVSASIELTPQELDAGPPPGEYSD 89

Query: 63  SFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH 122
                + +  + E ++   P      NKPP ++QR PSAYNCF+K+EI+R+K+  P +TH
Sbjct: 90  ESSGDDREGRDAE-DDAPAPAAAAVANKPPGRKQRTPSAYNCFVKEEIKRIKSMEPNITH 149

Query: 123 KEAFRTAAKNWANFPPIQEKEDAESC 149
           K+AF TAAKNWA+ P IQ+K   +SC
Sbjct: 150 KQAFSTAAKNWAHLPRIQQKRGRDSC 169

[Close]

BLAST of Lsi04G005610 vs. ExPASy Swiss-Prot
Match: Q9XFB1 (Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.7e-22
Identity = 71/161 (44.10%), Postives = 91/161 (56.52%), Query Frame = 0


Query: 1   MQVSVPCSSLSMAVTVTCGHCSSLLSVNM-MKATLVPL------HFLSSLSRNVPKVACR 60
           + VSVP SSL   VTV CGHCS+LLSV + M+A L+P        FL       P     
Sbjct: 37  LAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLE 96

Query: 61  EMNS-GKFFDSFKRSNLKFSEYEVEENLIPVI--------------PPFVNKPPEKRQRA 120
           EM S G+  +     +   S +   E+L+                 PP  N+PPEKRQR 
Sbjct: 97  EMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRV 156

Query: 121 PSAYNCFIKDEIRRLKAQNPEMTHKEAFRTAAKNWANFPPI 140
           PSAYN FIK+EI+R+KA NP+++H+EAF  AAKNWA+FP I
Sbjct: 157 PSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 197

[Close]

BLAST of Lsi04G005610 vs. ExPASy Swiss-Prot
Match: Q10FZ7 (Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-21
Identity = 67/142 (47.18%), Postives = 91/142 (64.08%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVN---MMKATLVPLHFLSSLSRNVPKVACREMNSGK 62
           VSVP +S+   VTV CGHC+SLLSVN   +++A     H   +L  +   ++ RE N  +
Sbjct: 26  VSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMH--NMSFRE-NYSE 85

Query: 63  FFDS--FKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQN 122
           +  S  + R  + FS+ + E  L         +PPEKRQR PSAYN FIK+EIRR+KA N
Sbjct: 86  YGSSSRYGRVPMMFSKNDTEHMLHV-------RPPEKRQRVPSAYNRFIKEEIRRIKANN 145

Query: 123 PEMTHKEAFRTAAKNWANFPPI 140
           P+++H+EAF TAAKNWA+FP I
Sbjct: 146 PDISHREAFSTAAKNWAHFPNI 157

[Close]

BLAST of Lsi04G005610 vs. ExPASy TrEMBL
Match: A0A1S3BDZ8 (axial regulator YABBY 4 OS=Cucumis melo OX=3656 GN=LOC103488996 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.8e-80
Identity = 150/166 (90.36%), Postives = 154/166 (92.77%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFD 62
           VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLS NVPK   REMNSGKFFD
Sbjct: 25  VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFD 84

Query: 63  SFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH 122
           SFKRS LKFSEYEVEE+LIP   PFVNKPPEKRQRAPSAYNCFIKDEIRRLK QNPEMTH
Sbjct: 85  SFKRSKLKFSEYEVEEDLIPATTPFVNKPPEKRQRAPSAYNCFIKDEIRRLKTQNPEMTH 144

Query: 123 KEAFRTAAKNWANFPPIQEKEDAESCNQIEGNGSWNTQIPEVHKDG 169
           KEAFRTAAKNWANFPPIQEK+D E CNQ+E NGSWNTQIPEVHK+G
Sbjct: 145 KEAFRTAAKNWANFPPIQEKDDKEKCNQVEENGSWNTQIPEVHKEG 190

[Close]

BLAST of Lsi04G005610 vs. ExPASy TrEMBL
Match: A0A6J1DDE4 (axial regulator YABBY 4-like OS=Momordica charantia OX=3673 GN=LOC111019075 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 150/177 (84.75%), Postives = 160/177 (90.40%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFD 62
           VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSS++RNVPK +  EMNSGKF D
Sbjct: 25  VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSIARNVPKESGGEMNSGKFLD 84

Query: 63  SFKRSNLKFSEYEVEE-NLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMT 122
           SFK SNLKFSEYE +E  LIPV PP VNKPP KRQRAPSAYNCFIK+EIRRLKAQNP+M+
Sbjct: 85  SFKASNLKFSEYEDDEGGLIPVTPPVVNKPPAKRQRAPSAYNCFIKNEIRRLKAQNPQMS 144

Query: 123 HKEAFRTAAKNWANFPPIQEKEDAESCNQIEGNGSWNTQIPEVHKDGKCFPRHSFLT 179
           HKEAFRTAAKNWANFPPIQ+KEDAESCNQIE NG W+TQ+PEVH DGKC  RHS LT
Sbjct: 145 HKEAFRTAAKNWANFPPIQQKEDAESCNQIEENGVWDTQMPEVHNDGKCSLRHSVLT 201

[Close]

BLAST of Lsi04G005610 vs. ExPASy TrEMBL
Match: A0A0A0KTN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600930 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.3e-78
Identity = 148/162 (91.36%), Postives = 152/162 (93.83%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFD 62
           VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLS NVPK   REMNSGKFFD
Sbjct: 25  VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFD 84

Query: 63  SFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH 122
           SFKRSNLKFSEYEVE++LIPV  PFVNKPPE+RQRAPSAYNCFIKDEIRRLK QNPEMTH
Sbjct: 85  SFKRSNLKFSEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTH 144

Query: 123 KEAFRTAAKNWANFPPIQEKEDAESCNQIEGNGSWNTQIPEV 165
           KEAFRTAAKNWANFPPIQEK+D E CNQIE NGSWNTQIPEV
Sbjct: 145 KEAFRTAAKNWANFPPIQEKDDKEKCNQIEENGSWNTQIPEV 186

[Close]

BLAST of Lsi04G005610 vs. ExPASy TrEMBL
Match: A0A5A7SSV9 (Axial regulator YABBY 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001120 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.8e-75
Identity = 141/157 (89.81%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 12  MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFDSFKRSNLKF 71
           MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLS NVPK   REMNSGKFFDSFKRS LKF
Sbjct: 1   MAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFDSFKRSKLKF 60

Query: 72  SEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTHKEAFRTAAK 131
           SEYEVEE+LIP   PFVNKPPEKRQRAPSAYNCFIKDEIRRLK QNPEMTHKEAFRTAAK
Sbjct: 61  SEYEVEEDLIPATTPFVNKPPEKRQRAPSAYNCFIKDEIRRLKTQNPEMTHKEAFRTAAK 120

Query: 132 NWANFPPIQEKEDAESCNQIEGNGSWNTQIPEVHKDG 169
           NWANFPPIQEK+D E CNQ+E NGSWNTQIPEVHK+G
Sbjct: 121 NWANFPPIQEKDDKEKCNQVEENGSWNTQIPEVHKEG 157

[Close]

BLAST of Lsi04G005610 vs. ExPASy TrEMBL
Match: A0A6J1H0F2 (axial regulator YABBY 4-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111458453 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.1e-73
Identity = 144/177 (81.36%), Postives = 154/177 (87.01%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFD 62
           VSVPCSSLSM VTVTCGHCSSLLSVNM++ATLVPLHFLSSLSRN+PK ACREM+SGK FD
Sbjct: 25  VSVPCSSLSMEVTVTCGHCSSLLSVNMLRATLVPLHFLSSLSRNLPKEACREMSSGKLFD 84

Query: 63  SFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH 122
           SF RSNLKFSEYEVEE LIPV PP V+KPPEKRQR PSAYNCFIKDEIRRLKA+NP+MTH
Sbjct: 85  SFIRSNLKFSEYEVEEGLIPVTPPSVHKPPEKRQRVPSAYNCFIKDEIRRLKAENPQMTH 144

Query: 123 KEAFRTAAKNWANFPP-IQEKEDAESCNQIEGNGSWNTQIPEVHKDGKCFPRHSFLT 179
           KEAFRTAAKNWANFPP IQ+KED +           NTQIPEV K+GKCFPRHS LT
Sbjct: 145 KEAFRTAAKNWANFPPTIQQKEDPQ-----------NTQIPEVEKNGKCFPRHSVLT 190

[Close]

BLAST of Lsi04G005610 vs. NCBI nr
Match: XP_038893210.1 (axial regulator YABBY 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 325.1 bits (832), Expect = 3.8e-85
Identity = 161/176 (91.48%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFD 62
           VSVPCSSLS AVTVTCGHCSSLLSVNMMKA LVPLHFLSSLS NVPK ACREMNSGKFFD
Sbjct: 25  VSVPCSSLSTAVTVTCGHCSSLLSVNMMKANLVPLHFLSSLSCNVPKEACREMNSGKFFD 84

Query: 63  SFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH 122
           SFKRS LKFSEYEVEE LIPV PPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH
Sbjct: 85  SFKRSKLKFSEYEVEEGLIPVTPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH 144

Query: 123 KEAFRTAAKNWANFPPIQEKEDAESCNQIEGNGSWNTQIPEVHKDGKCFPRHSFLT 179
           KEAFRTAAKNWANFPPI EKED   CN  E NG+WNTQIPEVHKDGKCFPRHSFLT
Sbjct: 145 KEAFRTAAKNWANFPPIHEKEDTMGCN--EENGTWNTQIPEVHKDGKCFPRHSFLT 198

[Close]

BLAST of Lsi04G005610 vs. NCBI nr
Match: XP_038893208.1 (axial regulator YABBY 4 isoform X1 [Benincasa hispida] >XP_038893209.1 axial regulator YABBY 4 isoform X1 [Benincasa hispida])

HSP 1 Score: 325.1 bits (832), Expect = 3.8e-85
Identity = 161/176 (91.48%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFD 62
           VSVPCSSLS AVTVTCGHCSSLLSVNMMKA LVPLHFLSSLS NVPK ACREMNSGKFFD
Sbjct: 34  VSVPCSSLSTAVTVTCGHCSSLLSVNMMKANLVPLHFLSSLSCNVPKEACREMNSGKFFD 93

Query: 63  SFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH 122
           SFKRS LKFSEYEVEE LIPV PPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH
Sbjct: 94  SFKRSKLKFSEYEVEEGLIPVTPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH 153

Query: 123 KEAFRTAAKNWANFPPIQEKEDAESCNQIEGNGSWNTQIPEVHKDGKCFPRHSFLT 179
           KEAFRTAAKNWANFPPI EKED   CN  E NG+WNTQIPEVHKDGKCFPRHSFLT
Sbjct: 154 KEAFRTAAKNWANFPPIHEKEDTMGCN--EENGTWNTQIPEVHKDGKCFPRHSFLT 207

[Close]

BLAST of Lsi04G005610 vs. NCBI nr
Match: KAE8648718.1 (hypothetical protein Csa_008048, partial [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 4.8e-80
Identity = 151/166 (90.96%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFD 62
           VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLS NVPK   REMNSGKFFD
Sbjct: 44  VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFD 103

Query: 63  SFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH 122
           SFKRSNLKFSEYEVE++LIPV  PFVNKPPE+RQRAPSAYNCFIKDEIRRLK QNPEMTH
Sbjct: 104 SFKRSNLKFSEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTH 163

Query: 123 KEAFRTAAKNWANFPPIQEKEDAESCNQIEGNGSWNTQIPEVHKDG 169
           KEAFRTAAKNWANFPPIQEK+D E CNQIE NGSWNTQIPEVHK+G
Sbjct: 164 KEAFRTAAKNWANFPPIQEKDDKEKCNQIEENGSWNTQIPEVHKEG 209

[Close]

BLAST of Lsi04G005610 vs. NCBI nr
Match: XP_004135480.2 (axial regulator YABBY 4 [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 4.8e-80
Identity = 151/166 (90.96%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFD 62
           VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLS NVPK   REMNSGKFFD
Sbjct: 66  VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFD 125

Query: 63  SFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH 122
           SFKRSNLKFSEYEVE++LIPV  PFVNKPPE+RQRAPSAYNCFIKDEIRRLK QNPEMTH
Sbjct: 126 SFKRSNLKFSEYEVEDDLIPVTTPFVNKPPERRQRAPSAYNCFIKDEIRRLKTQNPEMTH 185

Query: 123 KEAFRTAAKNWANFPPIQEKEDAESCNQIEGNGSWNTQIPEVHKDG 169
           KEAFRTAAKNWANFPPIQEK+D E CNQIE NGSWNTQIPEVHK+G
Sbjct: 186 KEAFRTAAKNWANFPPIQEKDDKEKCNQIEENGSWNTQIPEVHKEG 231

[Close]

BLAST of Lsi04G005610 vs. NCBI nr
Match: XP_008446193.1 (PREDICTED: axial regulator YABBY 4 [Cucumis melo])

HSP 1 Score: 306.2 bits (783), Expect = 1.8e-79
Identity = 150/166 (90.36%), Postives = 154/166 (92.77%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREMNSGKFFD 62
           VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLS NVPK   REMNSGKFFD
Sbjct: 25  VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSHNVPKETYREMNSGKFFD 84

Query: 63  SFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPEMTH 122
           SFKRS LKFSEYEVEE+LIP   PFVNKPPEKRQRAPSAYNCFIKDEIRRLK QNPEMTH
Sbjct: 85  SFKRSKLKFSEYEVEEDLIPATTPFVNKPPEKRQRAPSAYNCFIKDEIRRLKTQNPEMTH 144

Query: 123 KEAFRTAAKNWANFPPIQEKEDAESCNQIEGNGSWNTQIPEVHKDG 169
           KEAFRTAAKNWANFPPIQEK+D E CNQ+E NGSWNTQIPEVHK+G
Sbjct: 145 KEAFRTAAKNWANFPPIQEKDDKEKCNQVEENGSWNTQIPEVHKEG 190

[Close]

BLAST of Lsi04G005610 vs. TAIR 10
Match: AT1G23420.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 146.4 bits (368), Expect = 2.2e-35
Identity = 87/164 (53.05%), Postives = 109/164 (66.46%), Query Frame = 0


Query: 3   VSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKVACREM--NSGKF 62
           VSVP +SLSM VTV CGHC+SLLSVN+MKA+ +PLH L+SLS ++ +    E+    G  
Sbjct: 35  VSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLS-HLDETGKEEVAATDGVE 94

Query: 63  FDSFKRSNLK-------FSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRL 122
            +++K +  K        S  + E+  +  +   VNKPPEKRQRAPSAYNCFIK+EIRRL
Sbjct: 95  EEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRL 154

Query: 123 KAQNPEMTHKEAFRTAAKNWANFPPIQEKEDA-ESCNQIEGNGS 157
           KAQNP M HKEAF  AAKNWA+FPP   K  A + C   E N +
Sbjct: 155 KAQNPSMAHKEAFSLAAKNWAHFPPAHNKRAASDQCFCEEDNNA 197

[Close]

BLAST of Lsi04G005610 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-25
Identity = 69/140 (49.29%), Postives = 85/140 (60.71%), Query Frame = 0


Query: 1   MQVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSR-NVPKVACREMNSGK 60
           + V+VPCSSL   VTV CGHC++L SVNM  A       L SLSR N           G 
Sbjct: 23  LAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAA-------LQSLSRPNFQATNYAVPEYGS 82

Query: 61  FFDSFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPE 120
              S  +   + S   + E  I      VN+PPEKRQR PSAYN FIK+EI+R+KA NP+
Sbjct: 83  SSRSHTKIPSRISTRTITEQRI------VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPD 142

Query: 121 MTHKEAFRTAAKNWANFPPI 140
           ++H+EAF TAAKNWA+FP I
Sbjct: 143 ISHREAFSTAAKNWAHFPHI 149

[Close]

BLAST of Lsi04G005610 vs. TAIR 10
Match: AT2G26580.2 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-25
Identity = 69/140 (49.29%), Postives = 85/140 (60.71%), Query Frame = 0


Query: 1   MQVSVPCSSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSR-NVPKVACREMNSGK 60
           + V+VPCSSL   VTV CGHC++L SVNM  A       L SLSR N           G 
Sbjct: 23  LAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAA-------LQSLSRPNFQATNYAVPEYGS 82

Query: 61  FFDSFKRSNLKFSEYEVEENLIPVIPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAQNPE 120
              S  +   + S   + E  I      VN+PPEKRQR PSAYN FIK+EI+R+KA NP+
Sbjct: 83  SSRSHTKIPSRISTRTITEQRI------VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPD 142

Query: 121 MTHKEAFRTAAKNWANFPPI 140
           ++H+EAF TAAKNWA+FP I
Sbjct: 143 ISHREAFSTAAKNWAHFPHI 149

[Close]

BLAST of Lsi04G005610 vs. TAIR 10
Match: AT4G00180.2 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 107.8 bits (268), Expect = 8.9e-24
Identity = 72/160 (45.00%), Postives = 91/160 (56.88%), Query Frame = 0


Query: 2   QVSVPCSSLSMAVTVTCGHCSSLLSVNM-MKATLVPL------HFLSSLSRNVPKVACRE 61
           QVSVP SSL   VTV CGHCS+LLSV + M+A L+P        FL       P     E
Sbjct: 7   QVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEE 66

Query: 62  MNS-GKFFDSFKRSNLKFSEYEVEENLIPVI--------------PPFVNKPPEKRQRAP 121
           M S G+  +     +   S +   E+L+                 PP  N+PPEKRQR P
Sbjct: 67  MRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVP 126

Query: 122 SAYNCFIKDEIRRLKAQNPEMTHKEAFRTAAKNWANFPPI 140
           SAYN FIK+EI+R+KA NP+++H+EAF  AAKNWA+FP I
Sbjct: 127 SAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 166

[Close]

BLAST of Lsi04G005610 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 105.9 bits (263), Expect = 3.4e-23
Identity = 71/161 (44.10%), Postives = 91/161 (56.52%), Query Frame = 0


Query: 1   MQVSVPCSSLSMAVTVTCGHCSSLLSVNM-MKATLVPL------HFLSSLSRNVPKVACR 60
           + VSVP SSL   VTV CGHCS+LLSV + M+A L+P        FL       P     
Sbjct: 37  LAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLE 96

Query: 61  EMNS-GKFFDSFKRSNLKFSEYEVEENLIPVI--------------PPFVNKPPEKRQRA 120
           EM S G+  +     +   S +   E+L+                 PP  N+PPEKRQR 
Sbjct: 97  EMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRV 156

Query: 121 PSAYNCFIKDEIRRLKAQNPEMTHKEAFRTAAKNWANFPPI 140
           PSAYN FIK+EI+R+KA NP+++H+EAF  AAKNWA+FP I
Sbjct: 157 PSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 197

The following BLAST results are available for this feature:

BLAST of Lsi04G005610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDT3	3.2e-34	53.05	Axial regulator YABBY 4 OS=Arabidopsis thaliana OX=3702 GN=YAB4 PE=1 SV=2	[more]
Q8GW46	8.6e-24	49.29	Axial regulator YABBY 5 OS=Arabidopsis thaliana OX=3702 GN=YAB5 PE=1 SV=1	[more]
A2PZN8	2.5e-23	41.78	Protein YABBY 7 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB7 PE=2 SV=1	[more]
Q9XFB1	4.7e-22	44.10	Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1	[more]
Q10FZ7	1.4e-21	47.18	Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1	[more]

BLAST of Lsi04G005610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BDZ8	8.8e-80	90.36	axial regulator YABBY 4 OS=Cucumis melo OX=3656 GN=LOC103488996 PE=3 SV=1	[more]
A0A6J1DDE4	2.8e-78	84.75	axial regulator YABBY 4-like OS=Momordica charantia OX=3673 GN=LOC111019075 PE=3...	[more]
A0A0A0KTN4	6.3e-78	91.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G600930 PE=3 SV=1	[more]
A0A5A7SSV9	3.8e-75	89.81	Axial regulator YABBY 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1H0F2	6.1e-73	81.36	axial regulator YABBY 4-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Lsi04G005610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893210.1	3.8e-85	91.48	axial regulator YABBY 4 isoform X2 [Benincasa hispida]	[more]
XP_038893208.1	3.8e-85	91.48	axial regulator YABBY 4 isoform X1 [Benincasa hispida] >XP_038893209.1 axial reg...	[more]
KAE8648718.1	4.8e-80	90.96	hypothetical protein Csa_008048, partial [Cucumis sativus]	[more]
XP_004135480.2	4.8e-80	90.96	axial regulator YABBY 4 [Cucumis sativus]	[more]
XP_008446193.1	1.8e-79	90.36	PREDICTED: axial regulator YABBY 4 [Cucumis melo]	[more]

BLAST of Lsi04G005610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23420.1	2.2e-35	53.05	Plant-specific transcription factor YABBY family protein	[more]
AT2G26580.1	6.1e-25	49.29	plant-specific transcription factor YABBY family protein	[more]
AT2G26580.2	6.1e-25	49.29	plant-specific transcription factor YABBY family protein	[more]
AT4G00180.2	8.9e-24	45.00	Plant-specific transcription factor YABBY family protein	[more]
AT4G00180.1	3.4e-23	44.10	Plant-specific transcription factor YABBY family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 2..140 e-value: 2.2E-47 score: 161.7
IPR006780	YABBY protein	PANTHER	PTHR31675	PROTEIN YABBY 6-RELATED	coord: 3..160
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 88..152 e-value: 6.7E-9 score: 37.9
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 82..138
None	No IPR available	PANTHER	PTHR31675:SF8	AXIAL REGULATOR YABBY 4	coord: 3..160
None	No IPR available	CDD	cd00084	HMG-box	coord: 97..143 e-value: 3.29808E-5 score: 38.3688

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G005610.1	Lsi04G005610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development