Lsi04G005280 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G005280
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 4878730 .. 4879044 (-)
RNA-Seq ExpressionLsi04G005280
SyntenyLsi04G005280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACAGAAGAGTGAGGAAGAAGGGGGAAATGGGTGATTGGGGAAAGGAAATTGGATTGTTGATTGAAGGTTTTAGAAGAGTACCGAAGTATGAGTTGTTGGTGTTGGCTTCAATGGAATGGCTAAAAAATGGCACAGAAATCAAATCAAGTGGTTTGGTTCAGTGGCGAAGCCCCAGGTGTGAAAATGTTAGCAGCTTCCAGAAGGAGAAACGATGGCCGATGGGTCGGTGTTTGGTAATCTGTTTGGGACATGGCTTTGGGTATCCACCGACGTGGTTTAAATTTGGATTCTGCTCGCGTGTGGAATAG

mRNA sequence

ATGGGAAACAGAAGAGTGAGGAAGAAGGGGGAAATGGGTGATTGGGGAAAGGAAATTGGATTGTTGATTGAAGGTTTTAGAAGAGTACCGAAGTATGAGTTGTTGGTGTTGGCTTCAATGGAATGGCTAAAAAATGGCACAGAAATCAAATCAAGTGGTTTGGTTCAGTGGCGAAGCCCCAGGTGTGAAAATGTTAGCAGCTTCCAGAAGGAGAAACGATGGCCGATGGGTCGGTGTTTGGTAATCTGTTTGGGACATGGCTTTGGGTATCCACCGACGTGGTTTAAATTTGGATTCTGCTCGCGTGTGGAATAG

Coding sequence (CDS)

ATGGGAAACAGAAGAGTGAGGAAGAAGGGGGAAATGGGTGATTGGGGAAAGGAAATTGGATTGTTGATTGAAGGTTTTAGAAGAGTACCGAAGTATGAGTTGTTGGTGTTGGCTTCAATGGAATGGCTAAAAAATGGCACAGAAATCAAATCAAGTGGTTTGGTTCAGTGGCGAAGCCCCAGGTGTGAAAATGTTAGCAGCTTCCAGAAGGAGAAACGATGGCCGATGGGTCGGTGTTTGGTAATCTGTTTGGGACATGGCTTTGGGTATCCACCGACGTGGTTTAAATTTGGATTCTGCTCGCGTGTGGAATAG

Protein sequence

MGNRRVRKKGEMGDWGKEIGLLIEGFRRVPKYELLVLASMEWLKNGTEIKSSGLVQWRSPRCENVSSFQKEKRWPMGRCLVICLGHGFGYPPTWFKFGFCSRVE
Homology
[Close]
BLAST of Lsi04G005280 vs. ExPASy TrEMBL
Match: A0A0A0KTR3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602210 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.8e-15
Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 56  QWRSPRCENVSSFQKEKRWPMGRCLVICLGHGFGYPPTWFKFGFCSRVE 105
           Q  SPRCE V +FQKEKRWPM RCLVICLGH F YPPTWFKF F SR+E
Sbjct: 40  QMGSPRCETVRTFQKEKRWPMSRCLVICLGHRFEYPPTWFKFTFRSRLE 88

[Close]
BLAST of Lsi04G005280 vs. NCBI nr
Match: KGN51822.1 (hypothetical protein Csa_008688 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 56  QWRSPRCENVSSFQKEKRWPMGRCLVICLGHGFGYPPTWFKFGFCSRVE 105
           Q  SPRCE V +FQKEKRWPM RCLVICLGH F YPPTWFKF F SR+E
Sbjct: 40  QMGSPRCETVRTFQKEKRWPMSRCLVICLGHRFEYPPTWFKFTFRSRLE 88

The following BLAST results are available for this feature:
BLAST of Lsi04G005280 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G005280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTR35.8e-1577.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602210 PE=4 SV=1[more]
BLAST of Lsi04G005280 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51822.11.2e-1477.55hypothetical protein Csa_008688 [Cucumis sativus][more]
BLAST of Lsi04G005280 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G005280.1Lsi04G005280.1mRNA