Lsi04G005260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G005260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transcription factor PAR1-like
Location	chr04: 4874929 .. 4875183 (+)
RNA-Seq Expression	Lsi04G005260
Synteny	Lsi04G005260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATATTATAATAATTGTGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCTCAATCCAAATCAAGATGAGAAAGCTGCAGCGGCTTATCCCCGGAGGGCGGAGGCTGAAACCGGACCGGCTATTCTTGAAAACCGCTGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCACTTTCCAAGATTTATGATCCTAGGCTTTCTTAA

mRNA sequence

ATGGAATATTATAATAATTGTGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCTCAATCCAAATCAAGATGAGAAAGCTGCAGCGGCTTATCCCCGGAGGGCGGAGGCTGAAACCGGACCGGCTATTCTTGAAAACCGCTGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCACTTTCCAAGATTTATGATCCTAGGCTTTCTTAA

Coding sequence (CDS)

ATGGAATATTATAATAATTGTGAGAGCAAAGGAATTGGGAAGGTGAAGTGGCAGAGGAGAGGGAGGCGCGGCGGACGGCACGGCGGCGGCTCAATCCAAATCAAGATGAGAAAGCTGCAGCGGCTTATCCCCGGAGGGCGGAGGCTGAAACCGGACCGGCTATTCTTGAAAACCGCTGATTATATAATGCAATTGAGGTCTCAAGTTCATGTTTTGCAAGCACTTTCCAAGATTTATGATCCTAGGCTTTCTTAA

Protein sequence

MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTADYIMQLRSQVHVLQALSKIYDPRLS

Homology

[Close]

BLAST of Lsi04G005260 vs. ExPASy TrEMBL
Match: A0A0A0KQB4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602220 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 2  EYYNNCESKGIGKVKWQRRGRRGGRH---GGGSIQIKMRKLQRLIPGGRRLKPDRLFLKT 61
          +YY+ CESKGIGKV+WQRRGRRGGRH   GGGS+ +KMRKLQRLIPGGRRLKPDRLFLKT
Sbjct: 3  QYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKT 62

Query: 62 ADYIMQLRSQVHVLQALSKIYDPRLS 85
          ADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 63 ADYIMQLRSQVHVLQALSKIYDPTLS 88

[Close]

BLAST of Lsi04G005260 vs. ExPASy TrEMBL
Match: A0A6J1GYH6 (transcription factor PAR2-like OS=Cucurbita moschata OX=3662 GN=LOC111458642 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.2e-32
Identity = 71/84 (84.52%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTAD 60
          MEYYN  E++GI KVKWQRRGRRGGRHGG S+ +K+RKLQR+IPGGRRLKPDRLFLKTAD
Sbjct: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGASVHMKLRKLQRIIPGGRRLKPDRLFLKTAD 60

Query: 61 YIMQLRSQVHVLQALSKIYDPRLS 85
          YIMQLRSQVHVL ALSKIYDP+LS
Sbjct: 61 YIMQLRSQVHVLNALSKIYDPQLS 84

[Close]

BLAST of Lsi04G005260 vs. ExPASy TrEMBL
Match: A0A6J1IR24 (uncharacterized protein LOC111477674 OS=Cucurbita maxima OX=3661 GN=LOC111477674 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.2e-32
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 0


Query: 1  MEYYNNCESKGIGKVKWQRRGRRGGRHGG-GSIQIKMRKLQRLIPGGRRLKPDRLFLKTA 60
          MEYYN  E+KGI KVKWQRRGRRGG HGG  S+ +KMRKLQRLIPGGRRLKPDRLFLKTA
Sbjct: 1  MEYYNCDEAKGIAKVKWQRRGRRGGLHGGSSSVHMKMRKLQRLIPGGRRLKPDRLFLKTA 60

Query: 61 DYIMQLRSQVHVLQALSKIYDPRLS 85
          DYIMQLRSQVHVLQALSKIYDPRLS
Sbjct: 61 DYIMQLRSQVHVLQALSKIYDPRLS 85

[Close]

BLAST of Lsi04G005260 vs. ExPASy TrEMBL
Match: A0A1S3BFE3 (uncharacterized protein LOC103489026 OS=Cucumis melo OX=3656 GN=LOC103489026 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.2e-32
Identity = 74/87 (85.06%), Postives = 78/87 (89.66%), Query Frame = 0


Query: 3  YYNNCESKGIGKVKWQRRGRRGGRH-----GGGSIQIKMRKLQRLIPGGRRLKPDRLFLK 62
          YY+ CES GIGKV+WQRRGRRGGRH     GGGS+ +KMRKLQRLIPGGRRLKPDRLFLK
Sbjct: 4  YYSICESNGIGKVRWQRRGRRGGRHGGGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLK 63

Query: 63 TADYIMQLRSQVHVLQALSKIYDPRLS 85
          TADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 64 TADYIMQLRSQVHVLQALSKIYDPTLS 90

[Close]

BLAST of Lsi04G005260 vs. ExPASy TrEMBL
Match: A0A6J1DDZ5 (transcription factor PAR2 OS=Momordica charantia OX=3673 GN=LOC111019200 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 71/87 (81.61%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MEYY----NNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFL 60
          MEYY     + +  GIGKVKWQRRGRRGGRHGGGS+Q+KMRKLQRLIPGGR LKPDRLFL
Sbjct: 1  MEYYCVSSTDAKGIGIGKVKWQRRGRRGGRHGGGSVQMKMRKLQRLIPGGRGLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPRL 84
          KTADYIMQLRSQV+VLQALSKIY+P L
Sbjct: 61 KTADYIMQLRSQVNVLQALSKIYEPTL 87

[Close]

BLAST of Lsi04G005260 vs. NCBI nr
Match: XP_038891463.1 (transcription factor PAR2 [Benincasa hispida])

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTAD 60
          MEYYN+CESKGIG VKWQRRGRRGGRH G S+Q+KMRKLQRLIPGGRRLKPDRLFLKTAD
Sbjct: 1  MEYYNSCESKGIGNVKWQRRGRRGGRH-GASVQMKMRKLQRLIPGGRRLKPDRLFLKTAD 60

Query: 61 YIMQLRSQVHVLQALSKIYDPRLS 85
          YIMQLRSQVHVLQALSKIYDPRLS
Sbjct: 61 YIMQLRSQVHVLQALSKIYDPRLS 83

[Close]

BLAST of Lsi04G005260 vs. NCBI nr
Match: XP_011655641.1 (uncharacterized protein LOC105435564 [Cucumis sativus] >KGN51823.1 hypothetical protein Csa_009022 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 6.0e-33
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 2  EYYNNCESKGIGKVKWQRRGRRGGRH---GGGSIQIKMRKLQRLIPGGRRLKPDRLFLKT 61
          +YY+ CESKGIGKV+WQRRGRRGGRH   GGGS+ +KMRKLQRLIPGGRRLKPDRLFLKT
Sbjct: 3  QYYDTCESKGIGKVRWQRRGRRGGRHGGGGGGSVHMKMRKLQRLIPGGRRLKPDRLFLKT 62

Query: 62 ADYIMQLRSQVHVLQALSKIYDPRLS 85
          ADYIMQLRSQVHVLQALSKIYDP LS
Sbjct: 63 ADYIMQLRSQVHVLQALSKIYDPTLS 88

[Close]

BLAST of Lsi04G005260 vs. NCBI nr
Match: XP_022957171.1 (transcription factor PAR2-like [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 8.7e-32
Identity = 71/84 (84.52%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MEYYNNCESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRLKPDRLFLKTAD 60
          MEYYN  E++GI KVKWQRRGRRGGRHGG S+ +K+RKLQR+IPGGRRLKPDRLFLKTAD
Sbjct: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGASVHMKLRKLQRIIPGGRRLKPDRLFLKTAD 60

Query: 61 YIMQLRSQVHVLQALSKIYDPRLS 85
          YIMQLRSQVHVL ALSKIYDP+LS
Sbjct: 61 YIMQLRSQVHVLNALSKIYDPQLS 84

[Close]

BLAST of Lsi04G005260 vs. NCBI nr
Match: XP_023513052.1 (transcription factor PAR2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 1  MEYYNNCESKGIGKVKWQRRGRRGGRHGGG---SIQIKMRKLQRLIPGGRRLKPDRLFLK 60
          MEYYN  E++GI KVKWQRRGRRGGRHGGG   S+ +K+RKLQRLIPGGRRLKPDRLFLK
Sbjct: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGGGSSVHMKLRKLQRLIPGGRRLKPDRLFLK 60

Query: 61 TADYIMQLRSQVHVLQALSKIYDPRLS 85
          TADYIMQLRSQVHVLQALSKIYDP+LS
Sbjct: 61 TADYIMQLRSQVHVLQALSKIYDPQLS 87

[Close]

BLAST of Lsi04G005260 vs. NCBI nr
Match: KAG7032147.1 (hypothetical protein SDJN02_06190, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1  MEYYNNCESKGIGKVKWQRRGRRGGRHGGG----SIQIKMRKLQRLIPGGRRLKPDRLFL 60
          MEYYN  E++GI KVKWQRRGRRGGRHGGG    S+ +K+RKLQRLIPGGRRLKPDRLFL
Sbjct: 1  MEYYNCDETRGIAKVKWQRRGRRGGRHGGGGGSSSVHMKLRKLQRLIPGGRRLKPDRLFL 60

Query: 61 KTADYIMQLRSQVHVLQALSKIYDPRLS 85
          KTADYIMQLRSQVHVLQALSKIYDP+LS
Sbjct: 61 KTADYIMQLRSQVHVLQALSKIYDPQLS 88

[Close]

BLAST of Lsi04G005260 vs. TAIR 10
Match: AT1G23965.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70270.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 8   ESKGIGKVKWQRRGRRGGRHGGGSIQIKMRKLQRLIPGGRRL-KPDRLFLKTADYIMQLR 67
           ES+   + + Q + + G   G GSIQIKMRKL+ LIPGGRRL +PD L  KTADYIM L 
Sbjct: 42  ESRSNREQRKQTKKKTGRGSGSGSIQIKMRKLRVLIPGGRRLNQPDLLLTKTADYIMHLE 101

Query: 68  SQVHVLQALSKIY 80
            ++  L+A+S IY
Sbjct: 102 LRIRFLKAISDIY 114

[Close]

BLAST of Lsi04G005260 vs. TAIR 10
Match: AT1G70270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23965.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 27 HGGGS----IQIKMRKLQRLIPGGRRLK-PDRLFLKTADYIMQLRSQVHVLQALSKIY 80
          HG GS    +Q+K+R+LQ LIPGG+    PD L  KT DYI+ L+ ++  L+A+S++Y
Sbjct: 27 HGSGSRSGLLQMKVRRLQILIPGGQTCNHPDLLLSKTVDYIVHLKLKLRFLKAISEMY 84

The following BLAST results are available for this feature:

BLAST of Lsi04G005260 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G005260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQB4	2.9e-33	87.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G602220 PE=4 SV=1	[more]
A0A6J1GYH6	4.2e-32	84.52	transcription factor PAR2-like OS=Cucurbita moschata OX=3662 GN=LOC111458642 PE=...	[more]
A0A6J1IR24	7.2e-32	88.24	uncharacterized protein LOC111477674 OS=Cucurbita maxima OX=3661 GN=LOC111477674...	[more]
A0A1S3BFE3	7.2e-32	85.06	uncharacterized protein LOC103489026 OS=Cucumis melo OX=3656 GN=LOC103489026 PE=...	[more]
A0A6J1DDZ5	1.2e-29	81.61	transcription factor PAR2 OS=Momordica charantia OX=3673 GN=LOC111019200 PE=4 SV...	[more]

BLAST of Lsi04G005260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891463.1	1.1e-34	92.86	transcription factor PAR2 [Benincasa hispida]	[more]
XP_011655641.1	6.0e-33	87.21	uncharacterized protein LOC105435564 [Cucumis sativus] >KGN51823.1 hypothetical ...	[more]
XP_022957171.1	8.7e-32	84.52	transcription factor PAR2-like [Cucurbita moschata]	[more]
XP_023513052.1	1.1e-31	85.06	transcription factor PAR2-like [Cucurbita pepo subsp. pepo]	[more]
KAG7032147.1	1.5e-31	84.09	hypothetical protein SDJN02_06190, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi04G005260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23965.1	1.8e-11	53.42	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G70270.1	1.8e-06	46.55	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 9..80
None	No IPR available	PANTHER	PTHR33124:SF9	TRANSCRIPTION FACTOR	coord: 9..80
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 31..75 e-value: 1.02167E-13 score: 57.6324

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G005260.1	Lsi04G005260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated