Lsi04G005160 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G005160
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein PLASTID REDOX INSENSITIVE 2-like
Location	chr04: 4793788 .. 4795258 (+)
RNA-Seq Expression	Lsi04G005160
Synteny	Lsi04G005160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCCAAGGCCTAGAGTGGACAAATAAAGAGTCTTCTTTTTAATCATTATTATTTATTTATCTTCCTTACTTTCATCATCATCATCATCTACTTCTCTTGTTTTCCCTAAATTTTAACATTTCCTCTTTTTTCTTTTAAAAAATTCTACTTTAATTAAATTATGCTGTTTATTAATTATTTGAAAATTCTGAAGTGAGCTGGACACACTAAATTTAGACAACTGGGCTGAATTTGGCCCATCTGCACCTGGGTAATTTGATGAGCGTTTTGGCTTGGGCCAGTCCTTCTACATTTACAGGGTAGAAGGCCCAAACGTAGGTGGGCTTTGGCCCAAGAACGAGCAACGGACTCTCCATGGGCTTTACAAATCAACGCTACACGAAATTAGGGCTTAACTTAGGAGCGGGATAACCCCATCCAATGGCGCTCTACGGTTGCGCTCTGGTCTCATCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCAACATTTTCCTCTTTCCAGCCTTTCGTTAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCTGATCCCCGCCAGCTATGTTTACCCAGAACCGATACCGGAATTTGCAGAAGCTGTAAATTTTTCCGACGAAGCTCCTTTGTCAACTCAAATTGATTCTGGTTTTGCGTTAATGCATTTGGTTGCTTTTGGCAGGAAACCAAGAAATTTAAGGTGCAGTTATTGAAGAAACTAGCGAAGGATCGCGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGGTAATCATTTTATTGATTTGCAAGACTGTTAGATTGAAAAGATTGAAATTTTTTTATTTGGTAATTAGAATTTTGAATTCCTTTGTATTGGGTTGAAGAATATATCTGGGTGGCTAAATCGAACGAGGCGATTGTTTGCTTAAAGAGTTAGTTTTATTTTAGTTGTGCTTTTTCCTTCAAATGTTTCCATGGCGTGAGATTTATTTCCCCAGTTCAATAATTGAGGCCTGAGGAAACATCGGACCTGCCTATAGAGCTACAGGACGATCACTATTTCCAAGACAGCTTCCATTAATTGCGCAGAATTTTTCTGAATGTTTGACCAGTGCTGCCATTATTGATATGCTTCTTGCACTTTGATTTTTCAAATCAAAACTGAATGAATATTCCAATTTGAATTCAGTTGTCCGGATTTAAGTGAGCTTAACATGAATGTACTTGCACGTTTTGAGCAGATATTTGGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTTAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCGCTAGAACTTCGCTCCTATGGGCTCAAAACCATCTAGATCACGATTGGAAAGTTTGGAACTCAAAAGGAGGGCTCAAATGA

mRNA sequence

ATTCTCCAAGGCCTAGAGTGGACAAATAAAGAGTCTTCTTTTTAATCATTATTATTTATTTATCTTCCTTACTTTCATCATCATCATCATCTACTTCTCTTGTTTTCCCTAAATTTTAACATTTCCTCTTTTTTCTTTTAAAAAATTCTACTTTAATTAAATTATGCTGTTTATTAATTATTTGAAAATTCTGAAGTGAGCTGGACACACTAAATTTAGACAACTGGGCTGAATTTGGCCCATCTGCACCTGGGTAATTTGATGAGCGTTTTGGCTTGGGCCAGTCCTTCTACATTTACAGGGTAGAAGGCCCAAACGTAGGTGGGCTTTGGCCCAAGAACGAGCAACGGACTCTCCATGGGCTTTACAAATCAACGCTACACGAAATTAGGGCTTAACTTAGGAGCGGGATAACCCCATCCAATGGCGCTCTACGGTTGCGCTCTGGTCTCATCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCAACATTTTCCTCTTTCCAGCCTTTCGTTAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCTGATCCCCGCCAGCTATGTTTACCCAGAACCGATACCGGAATTTGCAGAAGCTGAAACCAAGAAATTTAAGGTGCAGTTATTGAAGAAACTAGCGAAGGATCGCGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGATATTTGGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTTAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCGCTAGAACTTCGCTCCTATGGGCTCAAAACCATCTAGATCACGATTGGAAAGTTTGGAACTCAAAAGGAGGGCTCAAATGA

Coding sequence (CDS)

ATGGCGCTCTACGGTTGCGCTCTGGTCTCATCCATTGCAGTTTCTCCCGCCAAGATCACAAGCTTCAACGGTTTTCACTACCCAACATTTTCCTCTTTCCAGCCTTTCGTTAAGCCCTTCGTTAATTCTACCTTAACTTCGTCCTTCATTTACAGAGCCACTCTGATCCCCGCCAGCTATGTTTACCCAGAACCGATACCGGAATTTGCAGAAGCTGAAACCAAGAAATTTAAGGTGCAGTTATTGAAGAAACTAGCGAAGGATCGCGAGACATTTGGGAACGACCTCGATTCGGTTGTGGATGTTTGCTCGAAGATATTTGGTGAATATTTGCATGTGGAGTACGGAGGTCCTGGGACATTATTAGTGGAGCCTTTCACTAATATGTTTATTGCTCTTAACGAGAGGAAATTACCTGGAGCGCCTTTGGCCGCTAGAACTTCGCTCCTATGGGCTCAAAACCATCTAGATCACGATTGGAAAGTTTGGAACTCAAAAGGAGGGCTCAAATGA

Protein sequence

MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK

Homology

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BLAST of Lsi04G005160 vs. ExPASy Swiss-Prot
Match: Q9XIK0 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PRIN2 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-30
Identity = 75/162 (46.30%), Postives = 101/162 (62.35%), Query Frame = 0


Query: 4   YGCAL--VSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYV 63
           + CAL  +SS A     I S   F     +  + F    ++S     F+ RA    A Y 
Sbjct: 22  FRCALPIISSPAAVSCAIKSTQFFKQRCRTKVRDF---SLSSLSRRGFVCRA----AEYK 81

Query: 64  YPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTL 123
           +P+PIPEFAEAET+KF+  +L KL+K R+ F + +D +V VC++IF  +L  EYGGPGTL
Sbjct: 82  FPDPIPEFAEAETEKFRDHMLNKLSK-RDLFEDSVDEIVGVCTEIFETFLRSEYGGPGTL 141

Query: 124 LVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVW 164
           LV PF +M   LNER+LPG P AAR ++ WAQ+H+D DWK W
Sbjct: 142 LVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEW 175

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BLAST of Lsi04G005160 vs. ExPASy Swiss-Prot
Match: B6UFC7 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.2e-26
Identity = 52/108 (48.15%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 60  YVYPEPIPEFAEAETKKFKVQLLKKLAKDRET-FGNDLDSVVDVCSKIFGEYLHVEYGGP 119
           Y +P+PIPEFAE ET KF+  +  +L + +E  FG+ ++ +VDVC++I G +L  +Y GP
Sbjct: 65  YKFPDPIPEFAEQETSKFREHMAWRLEQKKEDYFGDHVEEIVDVCTEIMGTFLENDYRGP 124

Query: 120 GTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSK 167
           GTLLV PF +M   + ER LPGAP AAR ++ WA+ ++D DWK W  +
Sbjct: 125 GTLLVHPFLDMKGEIKERGLPGAPQAARAAIAWAEKNVDKDWKAWTGE 172

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BLAST of Lsi04G005160 vs. ExPASy Swiss-Prot
Match: Q6H612 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-25
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 60  YVYPEPIPEFAEAETKKFKVQLLKKLAKDRET-FGNDLDSVVDVCSKIFGEYLHVEYGGP 119
           Y +P+PIPEFA  ET KFK  ++ +L + ++  FG  ++ +VDVC++I G +L  +Y GP
Sbjct: 64  YKFPDPIPEFAAQETSKFKEHMMWRLEQKKDDYFGEHVEEIVDVCTEILGTFLEHDYCGP 123

Query: 120 GTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSK 167
           GTLLV PF +M   + ER LPGAP AAR ++ WA+ ++D DWK W  +
Sbjct: 124 GTLLVHPFLDMKGEIKERGLPGAPQAARAAIAWAEKNIDKDWKAWTGE 171

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BLAST of Lsi04G005160 vs. ExPASy TrEMBL
Match: A0A5A7SZ04 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00740 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.3e-79
Identity = 147/170 (86.47%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASY 60
           MA YGCALVS+I VSPAKITSFNG HYPTFS F  FVKP VN TLTSS IYRAT I ASY
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGT 120
           VYPEPIPEFAE ET+KFK QL KKLAKDRETFGND DSVVDVCSKIFGEYLHVEYGGPGT
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKIFGEYLHVEYGGPGT 120

Query: 121 LLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK 171
           L+VEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LD+DW +WNSKGG K
Sbjct: 121 LIVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDNDWNIWNSKGGFK 170

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BLAST of Lsi04G005160 vs. ExPASy TrEMBL
Match: A0A1S3BEK8 (uncharacterized protein LOC103489034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489034 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.3e-79
Identity = 147/170 (86.47%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASY 60
           MA YGCALVS+I VSPAKITSFNG HYPTFS F  FVKP VN TLTSS IYRAT I ASY
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGT 120
           VYPEPIPEFAE ET+KFK QL KKLAKDRETFGND DSVVDVCSKIFGEYLHVEYGGPGT
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKIFGEYLHVEYGGPGT 120

Query: 121 LLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK 171
           L+VEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LD+DW +WNSKGG K
Sbjct: 121 LIVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDNDWNIWNSKGGFK 170

[Close]

BLAST of Lsi04G005160 vs. ExPASy TrEMBL
Match: A0A6J1JDH3 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485796 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.1e-70
Identity = 136/170 (80.00%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 1   MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASY 60
           MA Y C LVS+IAVSPAK T FNG +YPTFS      KPFVN TLTSS IYRAT   AS 
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSLGKPFVNCTLTSSIIYRATPATASC 60

Query: 61  VYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGT 120
           VY +PIPEFAE ET+KFK QL KKLAKDRETFGNDLDSVV+VCSKIF EYLHVEYGGPGT
Sbjct: 61  VYHDPIPEFAEVETRKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGPGT 120

Query: 121 LLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK 171
           LLVEPFTNMFIALNERKLPGAPLA RTSLLWAQN+LDHDW +W SK GLK
Sbjct: 121 LLVEPFTNMFIALNERKLPGAPLATRTSLLWAQNYLDHDWNIWISKRGLK 170

[Close]

BLAST of Lsi04G005160 vs. ExPASy TrEMBL
Match: A0A6J1GYK9 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458359 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.5e-70
Identity = 139/173 (80.35%), Postives = 146/173 (84.39%), Query Frame = 0


Query: 1   MALYGCALVSSIAVSPAKITSFNGFHYPT-FSSFQPFVKPFVNSTLTSSFIYRATLIP-- 60
           MA Y C LVS+IAVSPAK T FNG +YPT F S    V PFVN TLTSS IYRAT  P  
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFFPSSSSLVNPFVNCTLTSSIIYRATPAPAT 60

Query: 61  ASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGG 120
           A+ VYP+PIPEFAE ETKKFK QL KKLAKDRETFGNDLDSVV+VCSKIF EYLHVEYGG
Sbjct: 61  ATCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG 120

Query: 121 PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK 171
           PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LDHDW +W SK GLK
Sbjct: 121 PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 173

[Close]

BLAST of Lsi04G005160 vs. ExPASy TrEMBL
Match: A0A6J1DB25 (protein PLASTID REDOX INSENSITIVE 2-like OS=Momordica charantia OX=3673 GN=LOC111019054 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.9e-68
Identity = 130/167 (77.84%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASY 60
           MAL+GCAL+ + AV PAKIT FNG  +PTFS F   VKPFVN T TSSF YRAT +P  +
Sbjct: 61  MALHGCALLLASAVPPAKITCFNGLLHPTFSPFPSLVKPFVNCTSTSSFSYRATPLPPKF 120

Query: 61  VYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGT 120
           VYP+PIPEFAEAET+KF+  L KKLA+DR TFGNDLD VV+VCSKIFGEYLHVEYGGP T
Sbjct: 121 VYPDPIPEFAEAETRKFREYLSKKLAEDRATFGNDLDFVVEVCSKIFGEYLHVEYGGPET 180

Query: 121 LLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKG 168
           LLVEPFTNMFIALNERKLPGA LAARTSLLWAQNHLD DW +WNSKG
Sbjct: 181 LLVEPFTNMFIALNERKLPGASLAARTSLLWAQNHLDQDWTIWNSKG 227

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BLAST of Lsi04G005160 vs. NCBI nr
Match: XP_038891536.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 309.3 bits (791), Expect = 2.1e-80
Identity = 151/170 (88.82%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASY 60
           MA YGCALV +IAVSPAKITSFNG HYP FS+F  FVKPFVN TLTSSFIYRAT IPASY
Sbjct: 1   MAPYGCALVLAIAVSPAKITSFNGLHYPIFSTFPSFVKPFVNYTLTSSFIYRATPIPASY 60

Query: 61  VYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGT 120
           VYPEPIPEFAE ET+KFK QL KKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGT
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGT 120

Query: 121 LLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK 171
           LLVEPFTNMFIALNERKLPGA LAARTSLLWAQNHLDHDW +WN KG LK
Sbjct: 121 LLVEPFTNMFIALNERKLPGAALAARTSLLWAQNHLDHDWNIWNFKGRLK 170

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BLAST of Lsi04G005160 vs. NCBI nr
Match: XP_008446243.1 (PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo] >KAA0034339.1 uncharacterized protein E6C27_scaffold65G003420 [Cucumis melo var. makuwa] >TYK15580.1 uncharacterized protein E5676_scaffold35G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 147/170 (86.47%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASY 60
           MA YGCALVS+I VSPAKITSFNG HYPTFS F  FVKP VN TLTSS IYRAT I ASY
Sbjct: 1   MAPYGCALVSAIEVSPAKITSFNGLHYPTFSLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGT 120
           VYPEPIPEFAE ET+KFK QL KKLAKDRETFGND DSVVDVCSKIFGEYLHVEYGGPGT
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKIFGEYLHVEYGGPGT 120

Query: 121 LLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK 171
           L+VEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LD+DW +WNSKGG K
Sbjct: 121 LIVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDNDWNIWNSKGGFK 170

[Close]

BLAST of Lsi04G005160 vs. NCBI nr
Match: XP_004135230.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic isoform X1 [Cucumis sativus] >KAE8648725.1 hypothetical protein Csa_009011 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 4.4e-75
Identity = 142/170 (83.53%), Postives = 148/170 (87.06%), Query Frame = 0


Query: 1   MALYGCALVSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASY 60
           MA YG ALVS++ VSPAKI  FNG HYPTF  F  FVKP VN TLTSS IYRAT I ASY
Sbjct: 1   MARYGGALVSAVEVSPAKIAGFNGLHYPTFFLFPSFVKPLVNCTLTSSVIYRATPITASY 60

Query: 61  VYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGT 120
           VYPEPIPEFAE ET+KFK QL KKLAKDRETFGND DSVVDVCSKIFGEYLHVEYGGPGT
Sbjct: 61  VYPEPIPEFAEVETQKFKEQLSKKLAKDRETFGNDFDSVVDVCSKIFGEYLHVEYGGPGT 120

Query: 121 LLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK 171
           L+VEPFTNMFIALNERKL GAPLAARTSLLWAQNHLD+DW +WNSKGG K
Sbjct: 121 LIVEPFTNMFIALNERKLSGAPLAARTSLLWAQNHLDNDWNIWNSKGGFK 170

[Close]

BLAST of Lsi04G005160 vs. NCBI nr
Match: KAG6601371.1 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032155.1 Protein PLASTID REDOX INSENSITIVE 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.8 bits (717), Expect = 7.8e-72
Identity = 140/172 (81.40%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MALYGCALVSSIAVSPAKITSFNGFHYPTF--SSFQPFVKPFVNSTLTSSFIYRATLIPA 60
           MA Y C LVS+IAVSPAK T FNG +YPTF  SS    V PFVN TLTSS IYRAT  PA
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSSSLVNPFVNCTLTSSIIYRATPAPA 60

Query: 61  SYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGP 120
           + VYP+PIPEFAE ETKKFK QL KKLAKDRETFGNDLDSVV+VCSKIF EYLHVEYGGP
Sbjct: 61  TCVYPDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGGP 120

Query: 121 GTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK 171
           GTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LDHDW +W SK GLK
Sbjct: 121 GTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 172

[Close]

BLAST of Lsi04G005160 vs. NCBI nr
Match: XP_023513727.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 140/173 (80.92%), Postives = 146/173 (84.39%), Query Frame = 0


Query: 1   MALYGCALVSSIAVSPAKITSFNGFHYPTF---SSFQPFVKPFVNSTLTSSFIYRATLIP 60
           MA Y C LVS+IAVSPAK T FNG +YPTF   SS    VKPFVN TLTSS IYRAT   
Sbjct: 1   MASYSCVLVSAIAVSPAKTTCFNGLNYPTFSPSSSSSSLVKPFVNCTLTSSIIYRATPAT 60

Query: 61  ASYVYPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGG 120
           AS VY +PIPEFAE ETKKFK QL KKLAKDRETFGNDLDSVV+VCSKIF EYLHVEYGG
Sbjct: 61  ASCVYHDPIPEFAEVETKKFKEQLSKKLAKDRETFGNDLDSVVEVCSKIFSEYLHVEYGG 120

Query: 121 PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVWNSKGGLK 171
           PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQN+LDHDW +W SK GLK
Sbjct: 121 PGTLLVEPFTNMFIALNERKLPGAPLAARTSLLWAQNYLDHDWNIWISKRGLK 173

[Close]

BLAST of Lsi04G005160 vs. TAIR 10
Match: AT1G10522.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 134.4 bits (337), Expect = 8.4e-32
Identity = 75/162 (46.30%), Postives = 101/162 (62.35%), Query Frame = 0


Query: 4   YGCAL--VSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYV 63
           + CAL  +SS A     I S   F     +  + F    ++S     F+ RA    A Y 
Sbjct: 22  FRCALPIISSPAAVSCAIKSTQFFKQRCRTKVRDF---SLSSLSRRGFVCRA----AEYK 81

Query: 64  YPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTL 123
           +P+PIPEFAEAET+KF+  +L KL+K R+ F + +D +V VC++IF  +L  EYGGPGTL
Sbjct: 82  FPDPIPEFAEAETEKFRDHMLNKLSK-RDLFEDSVDEIVGVCTEIFETFLRSEYGGPGTL 141

Query: 124 LVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVW 164
           LV PF +M   LNER+LPG P AAR ++ WAQ+H+D DWK W
Sbjct: 142 LVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEW 175

[Close]

BLAST of Lsi04G005160 vs. TAIR 10
Match: AT1G10522.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 134.4 bits (337), Expect = 8.4e-32
Identity = 75/162 (46.30%), Postives = 101/162 (62.35%), Query Frame = 0


Query: 4   YGCAL--VSSIAVSPAKITSFNGFHYPTFSSFQPFVKPFVNSTLTSSFIYRATLIPASYV 63
           + CAL  +SS A     I S   F     +  + F    ++S     F+ RA    A Y 
Sbjct: 22  FRCALPIISSPAAVSCAIKSTQFFKQRCRTKVRDF---SLSSLSRRGFVCRA----AEYK 81

Query: 64  YPEPIPEFAEAETKKFKVQLLKKLAKDRETFGNDLDSVVDVCSKIFGEYLHVEYGGPGTL 123
           +P+PIPEFAEAET+KF+  +L KL+K R+ F + +D +V VC++IF  +L  EYGGPGTL
Sbjct: 82  FPDPIPEFAEAETEKFRDHMLNKLSK-RDLFEDSVDEIVGVCTEIFETFLRSEYGGPGTL 141

Query: 124 LVEPFTNMFIALNERKLPGAPLAARTSLLWAQNHLDHDWKVW 164
           LV PF +M   LNER+LPG P AAR ++ WAQ+H+D DWK W
Sbjct: 142 LVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEW 175

The following BLAST results are available for this feature:

BLAST of Lsi04G005160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIK0	1.2e-30	46.30	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
B6UFC7	5.2e-26	48.15	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 ...	[more]
Q6H612	1.5e-25	47.22	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japoni...	[more]

BLAST of Lsi04G005160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SZ04	9.3e-79	86.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BEK8	9.3e-79	86.47	uncharacterized protein LOC103489034 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1JDH3	2.1e-70	80.00	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 OS=Cucurbita ...	[more]
A0A6J1GYK9	3.5e-70	80.35	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X1 OS=Cucurbita ...	[more]
A0A6J1DB25	1.9e-68	77.84	protein PLASTID REDOX INSENSITIVE 2-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Lsi04G005160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891536.1	2.1e-80	88.82	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Benincasa hispida]	[more]
XP_008446243.1	1.9e-78	86.47	PREDICTED: uncharacterized protein LOC103489034 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_004135230.1	4.4e-75	83.53	protein PLASTID REDOX INSENSITIVE 2, chloroplastic isoform X1 [Cucumis sativus] ...	[more]
KAG6601371.1	7.8e-72	81.40	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrospe...	[more]
XP_023513727.1	1.1e-70	80.92	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like isoform X2 [Cucurbita pe...	[more]

BLAST of Lsi04G005160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10522.1	8.4e-32	46.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G10522.2	8.4e-32	46.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35987:SF3	PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-LIKE	coord: 1..166
IPR039349	Protein PLASTID REDOX INSENSITIVE 2	PANTHER	PTHR35987	PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-RELATED	coord: 1..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G005160.1	Lsi04G005160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression