Lsi04G005090 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G005090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	C2H2-type domain-containing protein
Location	chr04: 4739377 .. 4740087 (+)
RNA-Seq Expression	Lsi04G005090
Synteny	Lsi04G005090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGGACTCATTGGTTTGTAATTTTGAAGAAAGGGAAAGTGGGTTATTTTCAGGAGGTTCTTGCATGGAAAAAAAAGTAAAACTTTTTGGAATTGAGCTGAACCCATCAAAGAATTACAAGGAGGAGGAAGAATTAGGCACAAAATATTATTGCTTGAAAAGTTCTTGTAATAATATTGGTGAAGGAGATCATGAAAGTGTAAATTCTTCAACAACAACAACAGAACAAGCAGCTGCCATTGTTGTAAAACAACCAAAATTTGAGTGTCAATATTGTTTGAAAGAGTTTACAAATTCTCAAGCTTTGGGAGGCCATCAAAATGCTCACAAGAAAGAGAGATTGAAGAAGAAGAAGATGCAACTTCAAGCAAGAAAAGCTACTCTTAGTTATTATCTTCATCCTTCTAATTTTCAAACCAATACTACTACTAATAATAATTTTCTTTATGATTATCCTTCTTCTCCTCCTCCTTGTTTCTTTTACGATGATTCTTCTTCACAGATTAGTTTCAACCAAAACGACGCCGAATTCATCCATTTTGATGCTTCTCTTTCCTTTTTACCTCAACAACGACGGTCCTTCTTCACTTTCACACCCCCCGACATGTCGTCCCAACCCCCCAACCCTGTCGTTTTTCATTCTTCTTCTTCTTCTTCTTCTACCCCTTCTTGTAAATCTTTGGATCTTCAACTTGGTCTCAATTAA

mRNA sequence

ATGGGAAAGGACTCATTGGTTTGTAATTTTGAAGAAAGGGAAAGTGGGTTATTTTCAGGAGGTTCTTGCATGGAAAAAAAAGTAAAACTTTTTGGAATTGAGCTGAACCCATCAAAGAATTACAAGGAGGAGGAAGAATTAGGCACAAAATATTATTGCTTGAAAAGTTCTTGTAATAATATTGGTGAAGGAGATCATGAAAGTGTAAATTCTTCAACAACAACAACAGAACAAGCAGCTGCCATTGTTGTAAAACAACCAAAATTTGAGTGTCAATATTGTTTGAAAGAGTTTACAAATTCTCAAGCTTTGGGAGGCCATCAAAATGCTCACAAGAAAGAGAGATTGAAGAAGAAGAAGATGCAACTTCAAGCAAGAAAAGCTACTCTTAGTTATTATCTTCATCCTTCTAATTTTCAAACCAATACTACTACTAATAATAATTTTCTTTATGATTATCCTTCTTCTCCTCCTCCTTGTTTCTTTTACGATGATTCTTCTTCACAGATTAGTTTCAACCAAAACGACGCCGAATTCATCCATTTTGATGCTTCTCTTTCCTTTTTACCTCAACAACGACGGTCCTTCTTCACTTTCACACCCCCCGACATGTCGTCCCAACCCCCCAACCCTGTCGTTTTTCATTCTTCTTCTTCTTCTTCTTCTACCCCTTCTTGTAAATCTTTGGATCTTCAACTTGGTCTCAATTAA

Coding sequence (CDS)

ATGGGAAAGGACTCATTGGTTTGTAATTTTGAAGAAAGGGAAAGTGGGTTATTTTCAGGAGGTTCTTGCATGGAAAAAAAAGTAAAACTTTTTGGAATTGAGCTGAACCCATCAAAGAATTACAAGGAGGAGGAAGAATTAGGCACAAAATATTATTGCTTGAAAAGTTCTTGTAATAATATTGGTGAAGGAGATCATGAAAGTGTAAATTCTTCAACAACAACAACAGAACAAGCAGCTGCCATTGTTGTAAAACAACCAAAATTTGAGTGTCAATATTGTTTGAAAGAGTTTACAAATTCTCAAGCTTTGGGAGGCCATCAAAATGCTCACAAGAAAGAGAGATTGAAGAAGAAGAAGATGCAACTTCAAGCAAGAAAAGCTACTCTTAGTTATTATCTTCATCCTTCTAATTTTCAAACCAATACTACTACTAATAATAATTTTCTTTATGATTATCCTTCTTCTCCTCCTCCTTGTTTCTTTTACGATGATTCTTCTTCACAGATTAGTTTCAACCAAAACGACGCCGAATTCATCCATTTTGATGCTTCTCTTTCCTTTTTACCTCAACAACGACGGTCCTTCTTCACTTTCACACCCCCCGACATGTCGTCCCAACCCCCCAACCCTGTCGTTTTTCATTCTTCTTCTTCTTCTTCTTCTACCCCTTCTTGTAAATCTTTGGATCTTCAACTTGGTCTCAATTAA

Protein sequence

MGKDSLVCNFEERESGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCNNIGEGDHESVNSSTTTTEQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLSYYLHPSNFQTNTTTNNNFLYDYPSSPPPCFFYDDSSSQISFNQNDAEFIHFDASLSFLPQQRRSFFTFTPPDMSSQPPNPVVFHSSSSSSSTPSCKSLDLQLGLN

Homology

[Close]

BLAST of Lsi04G005090 vs. ExPASy Swiss-Prot
Match: Q39264 (Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.2e-18
Identity = 89/238 (37.39%), Postives = 109/238 (45.80%), Query Frame = 0


Query: 15  SGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCNNIGEGDHESVNSSTT 74
           +G  S GS  +K +KLFG EL          E+ T                 ESV+SST 
Sbjct: 10  TGESSSGSSSDKTIKLFGFELISG---SRTPEITTA----------------ESVSSSTN 69

Query: 75  TTEQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLSYYL 134
           TT      +    + ECQYC KEF NSQALGGHQNAHKKERLKKK++QLQAR+A++ YYL
Sbjct: 70  TTS-----LTVMKRHECQYCGKEFANSQALGGHQNAHKKERLKKKRLQLQARRASIGYYL 129

Query: 135 HPSNFQTNTTTNNNFLYDYPSSPPPCFF----------------YDDSSSQISFNQNDAE 194
             +N Q   TT+    Y  PS    C F                +   SSQI+F  ND  
Sbjct: 130 --TNHQQPITTSFQRQYKTPSY---CAFSSMHVNNDQMGVYNEDWSSRSSQINFGNND-- 189

Query: 195 FIHFDASLSFLPQQRRSFFTFTPPDMSSQPPNPVVFHS--SSSSSSTPSCKSLDLQLG 235
                 +   L +Q           +    PN + F    SS S    S  SLDL LG
Sbjct: 190 ------TCQDLNEQSGEM-----GKLYGVRPNMIQFQRDLSSRSDQMRSINSLDLHLG 205

[Close]

BLAST of Lsi04G005090 vs. ExPASy Swiss-Prot
Match: Q9C9H1 (Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-09
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 88  KFECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARK 128
           K+ECQYC +EF NSQALGGHQNAHKKER + K+ QLQA +
Sbjct: 72  KYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATR 111

[Close]

BLAST of Lsi04G005090 vs. ExPASy Swiss-Prot
Match: Q39262 (Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07
Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 69  VNSSTTTTEQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKA 128
           VN STT+TEQ          F C YC + F +SQALGGHQNAHK+ER   K+ Q  A  A
Sbjct: 49  VNESTTSTEQKL--------FSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMA--A 108

Query: 129 TLSYYLHPSNF 140
           + S + HP  F
Sbjct: 109 SASAFGHPYGF 109

[Close]

BLAST of Lsi04G005090 vs. ExPASy Swiss-Prot
Match: Q39265 (Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07
Identity = 40/103 (38.83%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 68  SVNSSTTTTEQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKER-LKKKKMQLQAR 127
           SV + ++     +    +  K+ECQYC +EF NSQALGGHQNAHKKER L K+   L  R
Sbjct: 20  SVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMLATR 79

Query: 128 KATLSYYLHP-SNFQTNTTTNNNFLYDYPSSPPPCFFYDDSSS 169
                +  HP +N   +       L   P  PP       SSS
Sbjct: 80  GLPRHHNFHPHTNPLLSAFAPLPHLLSQPHPPPHMMLSPSSSS 122

[Close]

BLAST of Lsi04G005090 vs. ExPASy Swiss-Prot
Match: Q84WI0 (Zinc finger protein GIS OS=Arabidopsis thaliana OX=3702 GN=GIS PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-07
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 88  KFECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLSYYLHPSN 139
           +FEC YC + F  SQALGGHQNAHK+ER      QL A++   SY+ HP N
Sbjct: 90  RFECHYCFRNFPTSQALGGHQNAHKRER------QL-AKRGVSSYFYHPDN 133

[Close]

BLAST of Lsi04G005090 vs. ExPASy TrEMBL
Match: A0A0A0KVQ6 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603380 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.8e-72
Identity = 175/277 (63.18%), Postives = 188/277 (67.87%), Query Frame = 0


Query: 1   MGKDSLVCNFE-ERESGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCN 60
           MGKDS  CNF+ E+E GLF GG CMEKKVKLFGIELNPS N+                CN
Sbjct: 2   MGKDSFCCNFDPEKEGGLFGGGCCMEKKVKLFGIELNPSNNF----------------CN 61

Query: 61  NI-GEGDHESVNSSTTTT---------------------EQAAAIVV--------KQPKF 120
           N   +GDHESVNSSTTT                      E+AA IVV        K  KF
Sbjct: 62  NFHDQGDHESVNSSTTTATTVCFDQRSSTNQQEQEEDDQEEAADIVVISNNNNNKKATKF 121

Query: 121 ECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLSYYLHPSNFQTNTTTNNNF 180
           ECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATL+YYL     Q+N+  NN+F
Sbjct: 122 ECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLTYYL-----QSNSNNNNHF 181

Query: 181 LYDY---PSSPPPCFFYDD----SSSQISFNQNDAEFIHFDASLSFLPQQRRS-FFTFTP 237
           LYDY    SSP   FF  D    +SSQISFNQNDA  IHFD+SL FLPQQ+R  FFTFTP
Sbjct: 182 LYDYDPNSSSPNSSFFISDDYYYNSSQISFNQNDAGLIHFDSSLPFLPQQQRQPFFTFTP 241

[Close]

BLAST of Lsi04G005090 vs. ExPASy TrEMBL
Match: A0A1S3BEM4 (zinc finger protein 5 OS=Cucumis melo OX=3656 GN=LOC103489043 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 7.6e-71
Identity = 175/279 (62.72%), Postives = 190/279 (68.10%), Query Frame = 0


Query: 1   MGKDSLVCNF-EERESGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCN 60
           MGKDS  C+F +E+ESGLF+G  CMEKKVKLFGIELNPS N                SCN
Sbjct: 1   MGKDSFCCDFDQEKESGLFAGSCCMEKKVKLFGIELNPSNN----------------SCN 60

Query: 61  NI-GEGDHESVNSSTTTT---------------------EQAAAIVV------KQPKFEC 120
               +GDHESVNSSTTTT                     E+AA IV+      K  KFEC
Sbjct: 61  KFHDQGDHESVNSSTTTTTTVCFDQRSSSNQQEQEEDDQEEAANIVIINNNNRKATKFEC 120

Query: 121 QYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLSYYLHPSNFQTNTTTNNNFLY 180
           QYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATL+YYL       + +TNN+FLY
Sbjct: 121 QYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLTYYLQ------SNSTNNHFLY 180

Query: 181 DY------PSSPPPCFFYDD----SSSQISFNQNDAEFIHFDASLSFLP-QQRRSFFTFT 237
           DY       SSP   FF  D    +SSQISFNQNDA  IHFD+SL FLP QQRR FFTFT
Sbjct: 181 DYDNPNSSSSSPNSSFFISDDYYYNSSQISFNQNDAGLIHFDSSLPFLPQQQRRPFFTFT 240

[Close]

BLAST of Lsi04G005090 vs. ExPASy TrEMBL
Match: A0A6J1GY76 (zinc finger protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111458285 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.1e-64
Identity = 163/239 (68.20%), Postives = 178/239 (74.48%), Query Frame = 0


Query: 1   MGKDSLVCNFEERESGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCNN 60
           MGK SL CNFE+RESGL S GSCMEKK+KLFG ELNPS      EEL T +  LK S   
Sbjct: 2   MGKASLECNFEDRESGLCSEGSCMEKKLKLFGFELNPS------EELATNWR-LKGS--- 61

Query: 61  IGEGDHESVNSSTTTTEQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKERLKKKK 120
           +GE  +ESV+SSTT +EQA AI   +PKFECQYC KEFTNSQALGGHQNAHKKERLKKKK
Sbjct: 62  VGEA-NESVSSSTTVSEQAMAI--NKPKFECQYCFKEFTNSQALGGHQNAHKKERLKKKK 121

Query: 121 MQLQARKATLS-YYLHPSNFQTNTTTNNNFLYDYPSSPPPCFFYDDSSSQISFNQNDAEF 180
           MQLQARKATLS YYLHP  FQ   T +NNFLY +PSS      + D SSQISFNQNDAEF
Sbjct: 122 MQLQARKATLSYYYLHP--FQ---TASNNFLYHFPSS----HTHHDDSSQISFNQNDAEF 181

Query: 181 IHFDASLSFLPQQRRSFFTFTPPDMSSQPPNPVVFHSSSS--SSSTPSCKSLDLQLGLN 237
           IHF+   SFLP +RR  FT TP D SS    PVVF SSSS    ++PSCKSLDLQLGLN
Sbjct: 182 IHFE---SFLPPERR-LFTLTPADSSSAAAKPVVFQSSSSLPPVASPSCKSLDLQLGLN 214

[Close]

BLAST of Lsi04G005090 vs. ExPASy TrEMBL
Match: A0A6J1DBL2 (zinc finger protein 5-like OS=Momordica charantia OX=3673 GN=LOC111019193 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 9.0e-64
Identity = 153/244 (62.70%), Postives = 167/244 (68.44%), Query Frame = 0


Query: 1   MGKDSLVCNFEERESGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCNN 60
           MG +S  CN EE ESGLFS G C EKKVKLFG EL PSKN                  + 
Sbjct: 1   MGNESWGCNLEEGESGLFSSGGCGEKKVKLFGFELKPSKN----------------DMSG 60

Query: 61  IGEGDHESVNSSTTT-TEQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKERLKKK 120
            GEGD ESVNSSTT    +AA +V+K+PKFECQYC KEFTNSQALGGHQNAHKKERLKKK
Sbjct: 61  SGEGD-ESVNSSTTVERSEAAIVVIKRPKFECQYCFKEFTNSQALGGHQNAHKKERLKKK 120

Query: 121 KMQLQARKATLSYYLHPSNFQTNTTTNNNFLYDYPSSPPPCFFYDDSSSQISFNQNDAEF 180
           +MQLQARKATLSYYLHP  FQ  T+ NNNFLY +             SSQISF+ NDAEF
Sbjct: 121 RMQLQARKATLSYYLHP--FQFQTSNNNNFLYSH------------DSSQISFSPNDAEF 180

Query: 181 IHFDASLSFLPQQRRSFFTFTPPDMSSQPPNPVVFHSSSSSSST-------PSCKSLDLQ 237
           IHFD      PQ+RR  FT T PD SS PPNP+VF+SSSSSSS+       PSCKSLDL 
Sbjct: 181 IHFD------PQERR-LFTLTQPDTSSGPPNPLVFYSSSSSSSSLPLSKQNPSCKSLDLH 206

[Close]

BLAST of Lsi04G005090 vs. ExPASy TrEMBL
Match: A0A6J1KAH9 (zinc finger protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111492522 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 7.6e-63
Identity = 160/245 (65.31%), Postives = 177/245 (72.24%), Query Frame = 0


Query: 1   MGKDSLVCNFEERESGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCNN 60
           MGK SL CNFE+RESGL S GSCMEKK+KLFG ELNPS      EEL T +  LK S   
Sbjct: 2   MGKASLGCNFEDRESGLCSEGSCMEKKLKLFGFELNPS------EELATNWR-LKGS--- 61

Query: 61  IGEGDHESVNSSTTTT---EQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKERLK 120
           +GE  +ESV+SSTT +       A+ + +PKFECQYC KEFTNSQALGGHQNAHKKERLK
Sbjct: 62  VGEA-NESVSSSTTVSFGERSEQAMAINKPKFECQYCFKEFTNSQALGGHQNAHKKERLK 121

Query: 121 KKKMQLQARKATLS-YYLHPSNFQTNTTTNNNFLYDYPSSPPPCFFYDDSSSQISFNQND 180
           KKKMQLQARKATLS YYLHP  FQ   T +NNFLY +PSS     +  D SS ISFNQND
Sbjct: 122 KKKMQLQARKATLSYYYLHP--FQ---TASNNFLYHFPSS-----YTHDDSSLISFNQND 181

Query: 181 AEFIHFDASLSFLPQQRRSFFTFTPPDMSSQPPNPVVFHSSSSSSS-----TPSCKSLDL 237
           AEFIHF+   SFLP +RR  F+ TP D SS    PVVF SSSSSSS     +PSCKSLDL
Sbjct: 182 AEFIHFE---SFLPPERR-LFSLTPADSSSAAAKPVVFQSSSSSSSLPPVVSPSCKSLDL 221

[Close]

BLAST of Lsi04G005090 vs. NCBI nr
Match: XP_038893064.1 (zinc finger protein 5-like [Benincasa hispida])

HSP 1 Score: 359.0 bits (920), Expect = 3.1e-95
Identity = 199/248 (80.24%), Postives = 202/248 (81.45%), Query Frame = 0


Query: 1   MGKDSLVCNFEERESGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLK-SSCN 60
           MGKDSL CNFEERESGLFS GSCMEKKVKLFGIELNPS N           YC K  SCN
Sbjct: 2   MGKDSLSCNFEERESGLFSRGSCMEKKVKLFGIELNPSNN----------SYCFKDQSCN 61

Query: 61  NIGEGDHESVNSSTTTT-----------EQAAAIVVKQPKFECQYCLKEFTNSQALGGHQ 120
           NIGEGDHESVNSSTTT            +Q  AI+VKQPKFECQYC KEFTNSQALGGHQ
Sbjct: 62  NIGEGDHESVNSSTTTVCFEQQQQQQQQQQQEAILVKQPKFECQYCFKEFTNSQALGGHQ 121

Query: 121 NAHKKERLKKKKMQLQARKATLSYYLHPSNFQTNTTTNNNFLYDYPSSPPPCFFYDDSSS 180
           NAHKKERLKKKKMQLQARKATLSYYL PSNFQ   TT NNFLY YPSS PPCFF DDSSS
Sbjct: 122 NAHKKERLKKKKMQLQARKATLSYYLQPSNFQ---TTTNNFLYHYPSS-PPCFFSDDSSS 181

Query: 181 QISFNQNDAEFIHFDASLSFLPQQRRSFFTFTPPDMSSQPPNPVVFHSSSSSSSTPSCKS 237
           QISFNQNDAEFIHFD+SLSFLPQ RRSFFT TP DMSS  PNPVVFHSSSSSSS PSCKS
Sbjct: 182 QISFNQNDAEFIHFDSSLSFLPQPRRSFFTLTPADMSSGSPNPVVFHSSSSSSS-PSCKS 234

[Close]

BLAST of Lsi04G005090 vs. NCBI nr
Match: KGN51841.1 (hypothetical protein Csa_008039 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 3.7e-72
Identity = 175/277 (63.18%), Postives = 188/277 (67.87%), Query Frame = 0


Query: 1   MGKDSLVCNFE-ERESGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCN 60
           MGKDS  CNF+ E+E GLF GG CMEKKVKLFGIELNPS N+                CN
Sbjct: 2   MGKDSFCCNFDPEKEGGLFGGGCCMEKKVKLFGIELNPSNNF----------------CN 61

Query: 61  NI-GEGDHESVNSSTTTT---------------------EQAAAIVV--------KQPKF 120
           N   +GDHESVNSSTTT                      E+AA IVV        K  KF
Sbjct: 62  NFHDQGDHESVNSSTTTATTVCFDQRSSTNQQEQEEDDQEEAADIVVISNNNNNKKATKF 121

Query: 121 ECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLSYYLHPSNFQTNTTTNNNF 180
           ECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATL+YYL     Q+N+  NN+F
Sbjct: 122 ECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLTYYL-----QSNSNNNNHF 181

Query: 181 LYDY---PSSPPPCFFYDD----SSSQISFNQNDAEFIHFDASLSFLPQQRRS-FFTFTP 237
           LYDY    SSP   FF  D    +SSQISFNQNDA  IHFD+SL FLPQQ+R  FFTFTP
Sbjct: 182 LYDYDPNSSSPNSSFFISDDYYYNSSQISFNQNDAGLIHFDSSLPFLPQQQRQPFFTFTP 241

[Close]

BLAST of Lsi04G005090 vs. NCBI nr
Match: XP_008446260.1 (PREDICTED: zinc finger protein 5 [Cucumis melo])

HSP 1 Score: 276.9 bits (707), Expect = 1.6e-70
Identity = 175/279 (62.72%), Postives = 190/279 (68.10%), Query Frame = 0


Query: 1   MGKDSLVCNF-EERESGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCN 60
           MGKDS  C+F +E+ESGLF+G  CMEKKVKLFGIELNPS N                SCN
Sbjct: 1   MGKDSFCCDFDQEKESGLFAGSCCMEKKVKLFGIELNPSNN----------------SCN 60

Query: 61  NI-GEGDHESVNSSTTTT---------------------EQAAAIVV------KQPKFEC 120
               +GDHESVNSSTTTT                     E+AA IV+      K  KFEC
Sbjct: 61  KFHDQGDHESVNSSTTTTTTVCFDQRSSSNQQEQEEDDQEEAANIVIINNNNRKATKFEC 120

Query: 121 QYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLSYYLHPSNFQTNTTTNNNFLY 180
           QYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATL+YYL       + +TNN+FLY
Sbjct: 121 QYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLTYYLQ------SNSTNNHFLY 180

Query: 181 DY------PSSPPPCFFYDD----SSSQISFNQNDAEFIHFDASLSFLP-QQRRSFFTFT 237
           DY       SSP   FF  D    +SSQISFNQNDA  IHFD+SL FLP QQRR FFTFT
Sbjct: 181 DYDNPNSSSSSPNSSFFISDDYYYNSSQISFNQNDAGLIHFDSSLPFLPQQQRRPFFTFT 240

[Close]

BLAST of Lsi04G005090 vs. NCBI nr
Match: KAG7032161.1 (Zinc finger protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 7.5e-65
Identity = 163/239 (68.20%), Postives = 179/239 (74.90%), Query Frame = 0


Query: 1   MGKDSLVCNFEERESGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCNN 60
           MGK SL CNFE+RESGL S GSCMEKK+KLFG ELNPS      EEL T +  LK S   
Sbjct: 2   MGKASLECNFEDRESGLCSEGSCMEKKLKLFGFELNPS------EELATNWR-LKGS--- 61

Query: 61  IGEGDHESVNSSTTTTEQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKERLKKKK 120
           +GE  +ESV+SSTT +EQA AI   +PKFECQYC KEFTNSQALGGHQNAHKKERLKKKK
Sbjct: 62  VGEA-NESVSSSTTVSEQAMAI--NKPKFECQYCFKEFTNSQALGGHQNAHKKERLKKKK 121

Query: 121 MQLQARKATLS-YYLHPSNFQTNTTTNNNFLYDYPSSPPPCFFYDDSSSQISFNQNDAEF 180
           MQLQARKATLS YYLHP  FQ   T +NNFLY +PSS    + + D SSQISFNQNDAEF
Sbjct: 122 MQLQARKATLSYYYLHP--FQ---TASNNFLYHFPSS----YTHHDDSSQISFNQNDAEF 181

Query: 181 IHFDASLSFLPQQRRSFFTFTPPDMSSQPPNPVVFHSSSS--SSSTPSCKSLDLQLGLN 237
           IHF+   SFLP +RR  FT TP D SS    PVVF SSSS    ++PSCKSLDLQLGLN
Sbjct: 182 IHFE---SFLPPERR-LFTLTPADSSSAAAKPVVFQSSSSLPPVASPSCKSLDLQLGLN 214

[Close]

BLAST of Lsi04G005090 vs. NCBI nr
Match: XP_022956595.1 (zinc finger protein 5-like [Cucurbita moschata] >KAG6601381.1 Zinc finger protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.5 bits (654), Expect = 2.2e-64
Identity = 163/239 (68.20%), Postives = 178/239 (74.48%), Query Frame = 0


Query: 1   MGKDSLVCNFEERESGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCNN 60
           MGK SL CNFE+RESGL S GSCMEKK+KLFG ELNPS      EEL T +  LK S   
Sbjct: 2   MGKASLECNFEDRESGLCSEGSCMEKKLKLFGFELNPS------EELATNWR-LKGS--- 61

Query: 61  IGEGDHESVNSSTTTTEQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKERLKKKK 120
           +GE  +ESV+SSTT +EQA AI   +PKFECQYC KEFTNSQALGGHQNAHKKERLKKKK
Sbjct: 62  VGEA-NESVSSSTTVSEQAMAI--NKPKFECQYCFKEFTNSQALGGHQNAHKKERLKKKK 121

Query: 121 MQLQARKATLS-YYLHPSNFQTNTTTNNNFLYDYPSSPPPCFFYDDSSSQISFNQNDAEF 180
           MQLQARKATLS YYLHP  FQ   T +NNFLY +PSS      + D SSQISFNQNDAEF
Sbjct: 122 MQLQARKATLSYYYLHP--FQ---TASNNFLYHFPSS----HTHHDDSSQISFNQNDAEF 181

Query: 181 IHFDASLSFLPQQRRSFFTFTPPDMSSQPPNPVVFHSSSS--SSSTPSCKSLDLQLGLN 237
           IHF+   SFLP +RR  FT TP D SS    PVVF SSSS    ++PSCKSLDLQLGLN
Sbjct: 182 IHFE---SFLPPERR-LFTLTPADSSSAAAKPVVFQSSSSLPPVASPSCKSLDLQLGLN 214

[Close]

BLAST of Lsi04G005090 vs. TAIR 10
Match: AT1G10480.1 (zinc finger protein 5 )

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-19
Identity = 89/238 (37.39%), Postives = 109/238 (45.80%), Query Frame = 0


Query: 15  SGLFSGGSCMEKKVKLFGIELNPSKNYKEEEELGTKYYCLKSSCNNIGEGDHESVNSSTT 74
           +G  S GS  +K +KLFG EL          E+ T                 ESV+SST 
Sbjct: 10  TGESSSGSSSDKTIKLFGFELISG---SRTPEITTA----------------ESVSSSTN 69

Query: 75  TTEQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLSYYL 134
           TT      +    + ECQYC KEF NSQALGGHQNAHKKERLKKK++QLQAR+A++ YYL
Sbjct: 70  TTS-----LTVMKRHECQYCGKEFANSQALGGHQNAHKKERLKKKRLQLQARRASIGYYL 129

Query: 135 HPSNFQTNTTTNNNFLYDYPSSPPPCFF----------------YDDSSSQISFNQNDAE 194
             +N Q   TT+    Y  PS    C F                +   SSQI+F  ND  
Sbjct: 130 --TNHQQPITTSFQRQYKTPSY---CAFSSMHVNNDQMGVYNEDWSSRSSQINFGNND-- 189

Query: 195 FIHFDASLSFLPQQRRSFFTFTPPDMSSQPPNPVVFHS--SSSSSSTPSCKSLDLQLG 235
                 +   L +Q           +    PN + F    SS S    S  SLDL LG
Sbjct: 190 ------TCQDLNEQSGEM-----GKLYGVRPNMIQFQRDLSSRSDQMRSINSLDLHLG 205

[Close]

BLAST of Lsi04G005090 vs. TAIR 10
Match: AT1G68360.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-10
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 88  KFECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARK 128
           K+ECQYC +EF NSQALGGHQNAHKKER + K+ QLQA +
Sbjct: 72  KYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATR 111

[Close]

BLAST of Lsi04G005090 vs. TAIR 10
Match: AT1G67030.1 (zinc finger protein 6 )

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 40/103 (38.83%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 68  SVNSSTTTTEQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKER-LKKKKMQLQAR 127
           SV + ++     +    +  K+ECQYC +EF NSQALGGHQNAHKKER L K+   L  R
Sbjct: 20  SVQNQSSEPRPGSGSGSESRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMLATR 79

Query: 128 KATLSYYLHP-SNFQTNTTTNNNFLYDYPSSPPPCFFYDDSSS 169
                +  HP +N   +       L   P  PP       SSS
Sbjct: 80  GLPRHHNFHPHTNPLLSAFAPLPHLLSQPHPPPHMMLSPSSSS 122

[Close]

BLAST of Lsi04G005090 vs. TAIR 10
Match: AT5G25160.1 (zinc finger protein 3 )

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 69  VNSSTTTTEQAAAIVVKQPKFECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKA 128
           VN STT+TEQ          F C YC + F +SQALGGHQNAHK+ER   K+ Q  A  A
Sbjct: 49  VNESTTSTEQKL--------FSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMA--A 108

Query: 129 TLSYYLHPSNF 140
           + S + HP  F
Sbjct: 109 SASAFGHPYGF 109

[Close]

BLAST of Lsi04G005090 vs. TAIR 10
Match: AT3G58070.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-08
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 88  KFECQYCLKEFTNSQALGGHQNAHKKERLKKKKMQLQARKATLSYYLHPSN 139
           +FEC YC + F  SQALGGHQNAHK+ER      QL A++   SY+ HP N
Sbjct: 90  RFECHYCFRNFPTSQALGGHQNAHKRER------QL-AKRGVSSYFYHPDN 133

The following BLAST results are available for this feature:

BLAST of Lsi04G005090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39264	4.2e-18	37.39	Zinc finger protein 5 OS=Arabidopsis thaliana OX=3702 GN=ZFP5 PE=1 SV=1	[more]
Q9C9H1	3.6e-09	72.50	Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1	[more]
Q39262	1.5e-07	49.30	Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1	[more]
Q39265	1.5e-07	38.83	Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1	[more]
Q84WI0	3.3e-07	54.90	Zinc finger protein GIS OS=Arabidopsis thaliana OX=3702 GN=GIS PE=1 SV=1	[more]

BLAST of Lsi04G005090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVQ6	1.8e-72	63.18	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603380 P...	[more]
A0A1S3BEM4	7.6e-71	62.72	zinc finger protein 5 OS=Cucumis melo OX=3656 GN=LOC103489043 PE=4 SV=1	[more]
A0A6J1GY76	1.1e-64	68.20	zinc finger protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111458285 PE=4 SV...	[more]
A0A6J1DBL2	9.0e-64	62.70	zinc finger protein 5-like OS=Momordica charantia OX=3673 GN=LOC111019193 PE=4 S...	[more]
A0A6J1KAH9	7.6e-63	65.31	zinc finger protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111492522 PE=4 SV=1	[more]

BLAST of Lsi04G005090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893064.1	3.1e-95	80.24	zinc finger protein 5-like [Benincasa hispida]	[more]
KGN51841.1	3.7e-72	63.18	hypothetical protein Csa_008039 [Cucumis sativus]	[more]
XP_008446260.1	1.6e-70	62.72	PREDICTED: zinc finger protein 5 [Cucumis melo]	[more]
KAG7032161.1	7.5e-65	68.20	Zinc finger protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022956595.1	2.2e-64	68.20	zinc finger protein 5-like [Cucurbita moschata] >KAG6601381.1 Zinc finger protei...	[more]

BLAST of Lsi04G005090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10480.1	3.0e-19	37.39	zinc finger protein 5	[more]
AT1G68360.1	2.5e-10	72.50	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G67030.1	1.1e-08	38.83	zinc finger protein 6	[more]
AT5G25160.1	1.1e-08	49.30	zinc finger protein 3	[more]
AT3G58070.1	2.4e-08	54.90	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13912	zf-C2H2_6	coord: 89..114 e-value: 3.5E-6 score: 26.9
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 66..146 e-value: 4.5E-7 score: 31.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..236
None	No IPR available	PANTHER	PTHR46353:SF5	ZINC FINGER PROTEIN 5	coord: 11..236
IPR044299	Zinc finger protein GIS3/ZFP5/ZFP6	PANTHER	PTHR46353	ZINC FINGER PROTEIN 5	coord: 11..236
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 91..111
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 89..116 score: 11.406082
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 86..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G005090.1	Lsi04G005090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0010090	trichome morphogenesis