Lsi04G004890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G004890
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Tetratricopeptide repeat protein 38
Location	chr04: 4516861 .. 4521139 (-)
RNA-Seq Expression	Lsi04G004890
Synteny	Lsi04G004890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAATGCGTGCGTGGAGGAGGTGATGCCGCCGTCGCAGATTTGGCTTAAAACCAAGTCGCTCTCTCAGAAATCAGAACGCAAGCAATTAGCTAATGCTATTTTATGGAAAGGAACTCCTCAAAAACGACAACCCTTGTCATTCTCGCACGTTCTTTTCCTTCCTTTCACATTATATATATTTGCGATTTGGACCGACATGGGCTTCTTTCATTTTCGTCGCCTTGGCTACGATCAATCAGACCCACGTCGTAAGTAACAATGGATATCGAATTAAACAAGAATCCGCTTCTATCTCATTCTTCCTGACATATTCTATCGTTTTTGCTTTAAATTTTTCAGGGATTTGGAGATTAGTCTTCTGCGCCGAGAACCATGGAAGACGGACTGAAATTGACCAAATGGGGTTATGAAATTAGAACATCATCCGACGCTTGCATCTCCGCCATTAATGCATTCTATGACCAGGTTCTTCTTCTTCTTCCTTGATTTTCCGCCATTGGGCTTCTCTAATTTTCGGTAATCTGAAATGGGGTTTGGGGGGTTTTTGTAATTTCTGTATCGTAATTGAGTGAAGGTGCTTAGTTACGGGAGGAAGAGGTCTGTGATTCTGGAGGCTACTGTTCACGACAAAGACTGTATGCTTGCGAATGTTTTGGCTGCTCATTTTCTTTCATCGTCCAATCCTTCACGAGTTCATCATCATCTCCAAGCAGCCAAGGCCAGTCTGGTTAGTTTTTATTTTTTAGTTTATTTGAAAATGTTCATTTGGTGATTTCTGTTGACAAATTGCTTAAATTGTTTTGATAAGGATCGTGCAACCCCATATGAGAAAGCCGTTTTCGATGCTATCAGTTGTTTGTTGTCCAACGACAGAGACGATAATGTTGCTGTTGAGCTGCACACTGAGGTATTTTGAAGACTGATCTTTTGAAATTTCTAGAAGCCGTGGACTTGCTCGTCTCTTTTTCTGTTTTGTGAACTAACCACTTAAGATTCGGATAATTTGAAGTCACAGTGGTGATATAGTTCACATGGAAATTCAATTGCCAACTTTTTGTTATGGGCTATCCTCAGAGATACAATCTTATTCCTTCCTTGACTTATTTTCTATTTGAATCTGCAGCTGCTTAAAAATTTTCCAAAGGATCTAATGTCTTTGAAAAGGGCTCAAATGCTATGCTTTTACTTGGGAAGTGCTGATATATCTTTGGCATTGGTTCAACAGGTGCCTTTTCTGCCTAAGAATGTAGTTTTCCTACTTATCAGTTTTAAAGTGATTTTCTTTAAAAGAAAAAATTGAAAACCTGCTTGAGATAAAATGAAGAATACAAAAGGACATAAAAAGCTGCCCACAAAACGAAATGCTCAGACTCAATCAGTTTATAAAATGATGAACGCATGTATTTGAATGTTAAGTATATTGATGGCTTCTTTCAAATATTCACTGATTGAATAGATGAAGAAGGGTTAAAATTGTAAGCTTTGAAAAATTTCGATCCTTCATTCCTTTCTCTTTATATATTGAGGCTTAGCAATAGATGAATTTTACAGGTTTTACCCCAAAATCAGGAAGAAGGTTTCATTTATGGCATGCTTGCTTTTCCTTTGTTGGAACTTGGCTGCATGGAAGAAGCTGAGAAGGCCGCAAGAAAGGGACTTGATATCAACAAGAAAGATGGTTGGGCACAGCATGCGGTGAGTGTCATTCATAAGCCACTTAATCTGTTGTATTTGATGAAAAAAATGTAAGAAGTTAACAATGTTTATCCTGGTTATTATTTTACCATTTGGATCGTTGCAGTTATGCCATATTCTTCAATATAGATGTCATTTTAAAGAAGCGGTTGAGTTTATGGAAGCATGCTCGCCTTCATGGAGTGACTGTTTATCATTCATGTATGTACTTTAAGCTTTGCGAATTAGAGTTTTTATCAAATGGATTTGTCTGTTTGATATACTGTACGTTTGGAAATTATCAATTTTCAGGGTGACACATAATTGGTGGCATGTGACACTCTGTTACCTAGAAGCCAATTCTCCGTTGAGTAAAATCCTTGAATTATATGACAACCATATATGGAAGGAGTTGGAAAAACCTGATGCTATGAGACCAGATGTATTTTTTGGTTTTAATATTACTCTATGTATGCAGTTAATGTTCTATAGTTTCAGGCCTTAAATTATTTCATTTCAGGTATACTTGAATGCCCTTGGTTTGATGTTGCGGTTGTTTGTGCGTGGTGACTTCGATCCATGTGAGGGGCGTTTGAAGATCTTGGCCAATGTTTTAACTGATAAAGTGAGTTGCGATCCTCCCCACCCCTCCCCTCCCCACAATCAACCAAGCAACAAAATACTAATAATACGATGAAGGGTGAAAAAGGAACACCACAAAAGAGTTCTCTGACTATTGGTCTAGAAAGTATCTGCTTTTTCGTACTCTTTCTAATGATATCCTTTATACATCTGGAATTCTGTTTGCGTACTTCCTGCCAAATGACTTAAGTTTTACATGCTTAGTTTTCTATGCTATACTTTTATAGAACCTGTTCACAGGATTTATGCATGATAATGACAAGCTTTCTCTTTTCTCTATACTTTACTAAAAAGGCAGTCTATGTTGTCAAGTTTAGTGAAAGCACAGTTGATGTGCAAGGCTTGGATTCAATCAGCTAGCTTATTTATGTAGGATCTAATGGCAACACTAGAGGGGTGAATAGGGTTGTCTACCAATTTTAATTTTATAAAATTCTAATTAATCTAAATGTGATAATTAAACTTGAACCTCAAATTAATAAAATAACACCAACCAATTACTTCAAGTTGATAGCTAAAAATACAAGTATACAAAACAACAAATCAATCCCAACATGCAATAAATAAAATTAGAGAGGAAAACTAAGAGCAAAAATAAAACAAGTTTAGGGGAAAAAAGACACCGAAATTTATAGTAGTTTGACAATTTGCCTACATCCACTCTACACGACCCATTTTTTTTCCGCCTAGGCTAAAACCCGGATCCTTTTCACTAGTTCATGATCTAACCAAAATAAAAAGAATCACCTCTAAATAGGTAAAATTCACAAGTTTAGCTCTATGACACTCCATAATTTTCTCTCAACTATTGCACTTATACAAATTGAAAATAATGAGAGAGATGAACTTTTGAGCACTTGGAGGATGAAACAATGGATGATTAATTTGCTTGGAATTTATTTTTGATTTTTCAAGAGAGTGGCTAGGAGGATGAAGAATGATTGATTATAAAAATTGAAGGATTTAACATCAACCATTGGATCTAGGGCAAAAGGAGTGGATGGTTGAGATTAAATGGAGAGAGAAAATAAGGGAGAATAAATTTAGGAAGGAAAAAGATTGAGAATGAGATTTTGGAAGGGAATCAACTTTTTCCTAATTTTTTTCTTCTTTTTTAATTTAAAAAATTTGGGATGCCACATGTTGCAATCTCATTTGATTGTGAGTGATCCCACGTTTCTCCTTTTCTTTTCCTTTTCATCTCTCTTTCGCCACATGTCATCTTAGGGTTGGTCCACGTTTGACATGTCACTGCCACATCATCGACCACATTAGATTTTTCTTTCAAATCCTTTTTTGGCCGCAACTTCTTCATTTGATATCCAATTTGAGTGATTTCTTGTTGAAATCGTCTCTCCAAATTCTATGTCGTGGACACTTTAAAACACTAAAATCATTAGTAAATAAACGTTTGTTATCATCAAAACATATGGTATGATTGAAACTTATAAAGCTAACAATTCCTTCTCATTCTTTCCCAGATTATTAGTTTTCTCAGTGTAATTGCAATGTTAATGTCACCTGAGGTATTCTTGAATAACTAAGAGTTAACCACTATTTCCAGGCTAACTGGCATCTAGACTGGCACTTTGACGTATTGATATCATGGGCTCTGGCTAAGGCTGGAGAGAATTTTGCAGCAGAAGAGTTACTTGGGAGCTTGAAGTCCCGGTTCGTACAGTGTTCTCTCATTGCATTCTTATTTATTTACATGTATGTGTCTTTATGGCTCTTTGTTTACTGTTATCGGCTGTTTTTGTGTAGATTGTTGAAAATGACTCCGCAGAAACGAGAAAAGATGCAAAGAGGAATGCTGGTTTGTTTCCTTTTTCTAGTCTCATGTACCCTTTAAGTAGTCTTTTTATAACACCTGTTGGGTTCTTTGTTTGTAACATATGATTGTGAAACATTTTGTTTCATTTTAACTACTTTAGATATAGGTTACCTTCCTTCAGTTTGA

mRNA sequence

GAAAAATGCGTGCGTGGAGGAGGTGATGCCGCCGTCGCAGATTTGGCTTAAAACCAAGTCGCTCTCTCAGAAATCAGAACGCAAGCAATTAGCTAATGCTATTTTATGGAAAGGAACTCCTCAAAAACGACAACCCTTGTCATTCTCGCACGTTCTTTTCCTTCCTTTCACATTATATATATTTGCGATTTGGACCGACATGGGCTTCTTTCATTTTCGTCGCCTTGGCTACGATCAATCAGACCCACGTCGGATTTGGAGATTAGTCTTCTGCGCCGAGAACCATGGAAGACGGACTGAAATTGACCAAATGGGGTTATGAAATTAGAACATCATCCGACGCTTGCATCTCCGCCATTAATGCATTCTATGACCAGGTGCTTAGTTACGGGAGGAAGAGGTCTGTGATTCTGGAGGCTACTGTTCACGACAAAGACTGTATGCTTGCGAATGTTTTGGCTGCTCATTTTCTTTCATCGTCCAATCCTTCACGAGTTCATCATCATCTCCAAGCAGCCAAGGCCAGTCTGGATCGTGCAACCCCATATGAGAAAGCCGTTTTCGATGCTATCAGTTGTTTGTTGTCCAACGACAGAGACGATAATGTTGCTGTTGAGCTGCACACTGAGCTGCTTAAAAATTTTCCAAAGGATCTAATGTCTTTGAAAAGGGCTCAAATGCTATGCTTTTACTTGGGAAGTGCTGATATATCTTTGGCATTGGTTCAACAGGTTTTACCCCAAAATCAGGAAGAAGGTTTCATTTATGGCATGCTTGCTTTTCCTTTGTTGGAACTTGGCTGCATGGAAGAAGCTGAGAAGGCCGCAAGAAAGGGACTTGATATCAACAAGAAAGATGGTTGGGCACAGCATGCGTTATGCCATATTCTTCAATATAGATGTCATTTTAAAGAAGCGGTTGAGTTTATGGAAGCATGCTCGCCTTCATGGAGTGACTGTTTATCATTCATGGTGACACATAATTGGTGGCATGTGACACTCTGTTACCTAGAAGCCAATTCTCCGTTGAGTAAAATCCTTGAATTATATGACAACCATATATGGAAGGAGTTGGAAAAACCTGATGCTATGAGACCAGATGTATACTTGAATGCCCTTGGTTTGATGTTGCGGTTGTTTGTGCGTGGTGACTTCGATCCATGTGAGGGGCGTTTGAAGATCTTGGCCAATGTTTTAACTGATAAAGCTAACTGGCATCTAGACTGGCACTTTGACGTATTGATATCATGGGCTCTGGCTAAGGCTGGAGAGAATTTTGCAGCAGAAGAGTTACTTGGGAGCTTGAAGTCCCGGTTCGTACAGTGTTCTCTCATTGCATTCTTATTTATTTACATGTATGTGTCTTTATGGCTCTTTGTTTACTGTTATCGGCTGTTTTTGTGTAGATTGTTGAAAATGACTCCGCAGAAACGAGAAAAGATGCAAAGAGGAATGCTGGTTTGTTTCCTTTTTCTAGTCTCATATATAGGTTACCTTCCTTCAGTTTGA

Coding sequence (CDS)

ATGGAAGACGGACTGAAATTGACCAAATGGGGTTATGAAATTAGAACATCATCCGACGCTTGCATCTCCGCCATTAATGCATTCTATGACCAGGTGCTTAGTTACGGGAGGAAGAGGTCTGTGATTCTGGAGGCTACTGTTCACGACAAAGACTGTATGCTTGCGAATGTTTTGGCTGCTCATTTTCTTTCATCGTCCAATCCTTCACGAGTTCATCATCATCTCCAAGCAGCCAAGGCCAGTCTGGATCGTGCAACCCCATATGAGAAAGCCGTTTTCGATGCTATCAGTTGTTTGTTGTCCAACGACAGAGACGATAATGTTGCTGTTGAGCTGCACACTGAGCTGCTTAAAAATTTTCCAAAGGATCTAATGTCTTTGAAAAGGGCTCAAATGCTATGCTTTTACTTGGGAAGTGCTGATATATCTTTGGCATTGGTTCAACAGGTTTTACCCCAAAATCAGGAAGAAGGTTTCATTTATGGCATGCTTGCTTTTCCTTTGTTGGAACTTGGCTGCATGGAAGAAGCTGAGAAGGCCGCAAGAAAGGGACTTGATATCAACAAGAAAGATGGTTGGGCACAGCATGCGTTATGCCATATTCTTCAATATAGATGTCATTTTAAAGAAGCGGTTGAGTTTATGGAAGCATGCTCGCCTTCATGGAGTGACTGTTTATCATTCATGGTGACACATAATTGGTGGCATGTGACACTCTGTTACCTAGAAGCCAATTCTCCGTTGAGTAAAATCCTTGAATTATATGACAACCATATATGGAAGGAGTTGGAAAAACCTGATGCTATGAGACCAGATGTATACTTGAATGCCCTTGGTTTGATGTTGCGGTTGTTTGTGCGTGGTGACTTCGATCCATGTGAGGGGCGTTTGAAGATCTTGGCCAATGTTTTAACTGATAAAGCTAACTGGCATCTAGACTGGCACTTTGACGTATTGATATCATGGGCTCTGGCTAAGGCTGGAGAGAATTTTGCAGCAGAAGAGTTACTTGGGAGCTTGAAGTCCCGGTTCGTACAGTGTTCTCTCATTGCATTCTTATTTATTTACATGTATGTGTCTTTATGGCTCTTTGTTTACTGTTATCGGCTGTTTTTGTGTAGATTGTTGAAAATGACTCCGCAGAAACGAGAAAAGATGCAAAGAGGAATGCTGGTTTGTTTCCTTTTTCTAGTCTCATATATAGGTTACCTTCCTTCAGTTTGA

Protein sequence

MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAAHFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNFPKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKAARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLCYLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKILANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSRFVQCSLIAFLFIYMYVSLWLFVYCYRLFLCRLLKMTPQKREKMQRGMLVCFLFLVSYIGYLPSV

Homology

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BLAST of Lsi04G004890 vs. ExPASy Swiss-Prot
Match: Q5R3I4 (Tetratricopeptide repeat protein 38 OS=Homo sapiens OX=9606 GN=TTC38 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.0e-19
Identity = 57/184 (30.98%), Postives = 94/184 (51.09%), Query Frame = 0


Query: 109 AVELHTELLKNFPKDLMSLKRAQMLCFYLGSADISLALVQQV----LPQNQEEGFIYGML 168
           A EL  ++L++ P D+++LK +    FYLG  +     V ++     P      ++ G+ 
Sbjct: 127 ACELWEQILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIY 186

Query: 169 AFPLLELGCMEEAEKAARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSD 228
           +F L+E    ++AEK A++ L IN  D W+ H + HI + +   K+ +EFM+     W D
Sbjct: 187 SFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQHSETFWKD 246

Query: 229 CLSFMVTHNWWHVTLCYLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRL 288
               +  HN+WH  L YL         L +YD HI   L+  DAM  DV +++  ++ RL
Sbjct: 247 S-DMLACHNYWHWAL-YLIEKGEYEAALTIYDTHILPSLQANDAML-DV-VDSCSMLYRL 306

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BLAST of Lsi04G004890 vs. ExPASy TrEMBL
Match: A0A0A0KSI1 (Tetratricopeptide repeat protein 38 OS=Cucumis sativus OX=3659 GN=Csa_5G604090 PE=3 SV=1)

HSP 1 Score: 664.8 bits (1714), Expect = 2.2e-187
Identity = 322/392 (82.14%), Postives = 344/392 (87.76%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           MEDG+KLTKWGY IRTSSD CISAINAFYDQVLSYGRKRSVILEATVHDKDC+LANVL A
Sbjct: 1   MEDGVKLTKWGYGIRTSSDDCISAINAFYDQVLSYGRKRSVILEATVHDKDCVLANVLGA 60

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           HFLSSS+PSR H+HLQ AKA LDRATPYEKAVFDAISCL+SNDRDDNVAVELHTELLKNF
Sbjct: 61  HFLSSSDPSRAHYHLQTAKAGLDRATPYEKAVFDAISCLMSNDRDDNVAVELHTELLKNF 120

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL SLKRAQ+LCFYLGSAD+SLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLSSLKRAQVLCFYLGSADLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           AR+GLDINKKDGWAQHALCH+LQYRCHFKEAVEFME CSPSW DC+SFMVTHNWWHV LC
Sbjct: 181 ARRGLDINKKDGWAQHALCHVLQYRCHFKEAVEFMETCSPSWHDCVSFMVTHNWWHVALC 240

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKIL 300
           YLEANSPLSKILE+YDN+IWKELEKPDA+ P+VYLNALGLMLRLFVRG++DPCEGRLKIL
Sbjct: 241 YLEANSPLSKILEIYDNYIWKELEKPDAIGPEVYLNALGLMLRLFVRGEYDPCEGRLKIL 300

Query: 301 ANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSRFVQCSLIAFLFIYMYVS 360
           ANVLTDKANWHL+WHFD+L  WALAKAGE FAA+ELLGSLKS                  
Sbjct: 301 ANVLTDKANWHLEWHFDILTLWALAKAGEIFAADELLGSLKS------------------ 360

Query: 361 LWLFVYCYRLFLCRLLKMTPQKREKMQRGMLV 393
                        RL KMT +KREKMQR +L+
Sbjct: 361 -------------RLSKMTAKKREKMQRRVLL 361

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BLAST of Lsi04G004890 vs. ExPASy TrEMBL
Match: A0A6J1GYC7 (Tetratricopeptide repeat protein 38 OS=Cucurbita moschata OX=3662 GN=LOC111458418 PE=3 SV=1)

HSP 1 Score: 661.0 bits (1704), Expect = 3.2e-186
Identity = 317/392 (80.87%), Postives = 348/392 (88.78%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           MEDGLKLTKWGYE+RTSSDACISAINAFYDQVLSYGR+RSVILEA VHDK C+LANV AA
Sbjct: 1   MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 60

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           +FLSSS+PSRVHHHLQAAK  LDRATPYEKAV+DAI+CL+SNDRDDNVAVEL T+LLK+F
Sbjct: 61  YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 120

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL+SLK+AQ+LCFY+G+ D+SLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           AR+GLDINKKDGWAQHALCH+LQYRC FKEAVEFMEACSP+WSDCLSF+VTHNWWHV LC
Sbjct: 181 ARRGLDINKKDGWAQHALCHVLQYRCRFKEAVEFMEACSPTWSDCLSFLVTHNWWHVALC 240

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKIL 300
           YLEANSPLSKILE+YDN+IWKELEKPDAM PDVYLNALGLMLRLFVRG+F PCEGRLKIL
Sbjct: 241 YLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVRGEFGPCEGRLKIL 300

Query: 301 ANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSRFVQCSLIAFLFIYMYVS 360
           ANVLTDKANWHL+WHFD+L +WALAK+GE FAAEELLGSLKS                  
Sbjct: 301 ANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKS------------------ 360

Query: 361 LWLFVYCYRLFLCRLLKMTPQKREKMQRGMLV 393
                        R+LKMTP+K+EKMQRGML+
Sbjct: 361 -------------RMLKMTPKKQEKMQRGMLL 361

[Close]

BLAST of Lsi04G004890 vs. ExPASy TrEMBL
Match: A0A6J1H084 (Tetratricopeptide repeat protein 38 OS=Cucurbita moschata OX=3662 GN=LOC111458418 PE=3 SV=1)

HSP 1 Score: 661.0 bits (1704), Expect = 3.2e-186
Identity = 317/392 (80.87%), Postives = 348/392 (88.78%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           MEDGLKLTKWGYE+RTSSDACISAINAFYDQVLSYGR+RSVILEA VHDK C+LANV AA
Sbjct: 1   MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 60

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           +FLSSS+PSRVHHHLQAAK  LDRATPYEKAV+DAI+CL+SNDRDDNVAVEL T+LLK+F
Sbjct: 61  YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 120

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL+SLK+AQ+LCFY+G+ D+SLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           AR+GLDINKKDGWAQHALCH+LQYRC FKEAVEFMEACSP+WSDCLSF+VTHNWWHV LC
Sbjct: 181 ARRGLDINKKDGWAQHALCHVLQYRCRFKEAVEFMEACSPTWSDCLSFLVTHNWWHVALC 240

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKIL 300
           YLEANSPLSKILE+YDN+IWKELEKPDAM PDVYLNALGLMLRLFVRG+F PCEGRLKIL
Sbjct: 241 YLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVRGEFGPCEGRLKIL 300

Query: 301 ANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSRFVQCSLIAFLFIYMYVS 360
           ANVLTDKANWHL+WHFD+L +WALAK+GE FAAEELLGSLKS                  
Sbjct: 301 ANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKS------------------ 360

Query: 361 LWLFVYCYRLFLCRLLKMTPQKREKMQRGMLV 393
                        R+LKMTP+K+EKMQRGML+
Sbjct: 361 -------------RMLKMTPKKQEKMQRGMLL 361

[Close]

BLAST of Lsi04G004890 vs. ExPASy TrEMBL
Match: A0A6J1INE6 (Tetratricopeptide repeat protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111477101 PE=3 SV=1)

HSP 1 Score: 660.2 bits (1702), Expect = 5.5e-186
Identity = 316/392 (80.61%), Postives = 349/392 (89.03%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           MEDGLKLTKWGYE+ TSSD+CISAINAFYDQVLSYGR+RSVILEA VHDKDC+LANV AA
Sbjct: 1   MEDGLKLTKWGYEVITSSDSCISAINAFYDQVLSYGRRRSVILEAPVHDKDCVLANVFAA 60

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           +FLSSS+PSRVHHHLQAAKA LDRATPYEKAV+DAISCL+SNDRDDNVAVEL T+LLK+F
Sbjct: 61  YFLSSSDPSRVHHHLQAAKARLDRATPYEKAVYDAISCLMSNDRDDNVAVELLTQLLKSF 120

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL+SLK+AQ+LCFY+G+ D+SLALVQQVLPQNQEEGFIYGMLAFPLLE+GCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLEIGCMEEAEKA 180

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           A++GLDINKKDGWAQHALCH+LQYRC FKEAVEFMEACSP+WSDCLSF+VTHNWWHV LC
Sbjct: 181 AKRGLDINKKDGWAQHALCHVLQYRCRFKEAVEFMEACSPTWSDCLSFLVTHNWWHVALC 240

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKIL 300
           YLEANSPLSKILE+YDN+IWKELEKPDAM PDVYLNALGLMLRLFVRG+F PCEGRLKIL
Sbjct: 241 YLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVRGEFGPCEGRLKIL 300

Query: 301 ANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSRFVQCSLIAFLFIYMYVS 360
           ANVLTDKANWHL+WHFD+L +WALAK+GE FAAEELLGSLKS                  
Sbjct: 301 ANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKS------------------ 360

Query: 361 LWLFVYCYRLFLCRLLKMTPQKREKMQRGMLV 393
                        R+LKMTP+K+EKMQRGML+
Sbjct: 361 -------------RMLKMTPKKQEKMQRGMLL 361

[Close]

BLAST of Lsi04G004890 vs. ExPASy TrEMBL
Match: A0A6J1IPU9 (Tetratricopeptide repeat protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111477101 PE=3 SV=1)

HSP 1 Score: 660.2 bits (1702), Expect = 5.5e-186
Identity = 316/392 (80.61%), Postives = 349/392 (89.03%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           MEDGLKLTKWGYE+ TSSD+CISAINAFYDQVLSYGR+RSVILEA VHDKDC+LANV AA
Sbjct: 1   MEDGLKLTKWGYEVITSSDSCISAINAFYDQVLSYGRRRSVILEAPVHDKDCVLANVFAA 60

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           +FLSSS+PSRVHHHLQAAKA LDRATPYEKAV+DAISCL+SNDRDDNVAVEL T+LLK+F
Sbjct: 61  YFLSSSDPSRVHHHLQAAKARLDRATPYEKAVYDAISCLMSNDRDDNVAVELLTQLLKSF 120

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL+SLK+AQ+LCFY+G+ D+SLALVQQVLPQNQEEGFIYGMLAFPLLE+GCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLEIGCMEEAEKA 180

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           A++GLDINKKDGWAQHALCH+LQYRC FKEAVEFMEACSP+WSDCLSF+VTHNWWHV LC
Sbjct: 181 AKRGLDINKKDGWAQHALCHVLQYRCRFKEAVEFMEACSPTWSDCLSFLVTHNWWHVALC 240

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKIL 300
           YLEANSPLSKILE+YDN+IWKELEKPDAM PDVYLNALGLMLRLFVRG+F PCEGRLKIL
Sbjct: 241 YLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVRGEFGPCEGRLKIL 300

Query: 301 ANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSRFVQCSLIAFLFIYMYVS 360
           ANVLTDKANWHL+WHFD+L +WALAK+GE FAAEELLGSLKS                  
Sbjct: 301 ANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKS------------------ 360

Query: 361 LWLFVYCYRLFLCRLLKMTPQKREKMQRGMLV 393
                        R+LKMTP+K+EKMQRGML+
Sbjct: 361 -------------RMLKMTPKKQEKMQRGMLL 361

[Close]

BLAST of Lsi04G004890 vs. NCBI nr
Match: XP_038891807.1 (tetratricopeptide repeat protein 38 isoform X2 [Benincasa hispida])

HSP 1 Score: 685.6 bits (1768), Expect = 2.5e-193
Identity = 335/392 (85.46%), Postives = 366/392 (93.37%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           ME G+KLTKWGY+IRTSSDACISAINAFYDQVLSYGRKRSVIL+ATVHDKDC+LANVLA 
Sbjct: 1   MEGGVKLTKWGYQIRTSSDACISAINAFYDQVLSYGRKRSVILDATVHDKDCVLANVLAV 60

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           HFLSSS+PSRVHHHLQAAKA LDRATPYEKAVFDAISCL+SN+RDDNVAVELH+ELLK F
Sbjct: 61  HFLSSSDPSRVHHHLQAAKAGLDRATPYEKAVFDAISCLMSNNRDDNVAVELHSELLKKF 120

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL+SLKRAQ+LCFY+G+AD+SLALVQQVLPQNQEEGFIYGMLAF LLELG MEEAEKA
Sbjct: 121 PKDLLSLKRAQLLCFYMGNADLSLALVQQVLPQNQEEGFIYGMLAFSLLELGYMEEAEKA 180

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           AR+GLDINKKDGWAQHALCH+LQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHV LC
Sbjct: 181 ARRGLDINKKDGWAQHALCHVLQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVALC 240

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKIL 300
           YLEANS LS+ILE+YDN+IWKELEKPDAM PDVYLNALGLMLRLFVRG++DPCEGRLKIL
Sbjct: 241 YLEANSRLSRILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVRGEYDPCEGRLKIL 300

Query: 301 ANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSRFVQCSLIAFLFIYMYVS 360
           A VLTDKANWHL+WHFDVL SWALAKAG+ FAAEELLGSLKSR   CS++  L  Y++V 
Sbjct: 301 AKVLTDKANWHLEWHFDVLTSWALAKAGQIFAAEELLGSLKSR--SCSIL-LLVSYLHVC 360

Query: 361 LWLFVYCYRLFLCRLLKMTPQKREKMQRGMLV 393
            ++  Y Y LFL RLLKMTP++REKMQRGML+
Sbjct: 361 GFMAQY-YLLFLRRLLKMTPKRREKMQRGMLL 388

[Close]

BLAST of Lsi04G004890 vs. NCBI nr
Match: XP_038891806.1 (tetratricopeptide repeat protein 38 isoform X1 [Benincasa hispida])

HSP 1 Score: 685.6 bits (1768), Expect = 2.5e-193
Identity = 335/392 (85.46%), Postives = 366/392 (93.37%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           ME G+KLTKWGY+IRTSSDACISAINAFYDQVLSYGRKRSVIL+ATVHDKDC+LANVLA 
Sbjct: 1   MEGGVKLTKWGYQIRTSSDACISAINAFYDQVLSYGRKRSVILDATVHDKDCVLANVLAV 60

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           HFLSSS+PSRVHHHLQAAKA LDRATPYEKAVFDAISCL+SN+RDDNVAVELH+ELLK F
Sbjct: 61  HFLSSSDPSRVHHHLQAAKAGLDRATPYEKAVFDAISCLMSNNRDDNVAVELHSELLKKF 120

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL+SLKRAQ+LCFY+G+AD+SLALVQQVLPQNQEEGFIYGMLAF LLELG MEEAEKA
Sbjct: 121 PKDLLSLKRAQLLCFYMGNADLSLALVQQVLPQNQEEGFIYGMLAFSLLELGYMEEAEKA 180

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           AR+GLDINKKDGWAQHALCH+LQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHV LC
Sbjct: 181 ARRGLDINKKDGWAQHALCHVLQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVALC 240

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKIL 300
           YLEANS LS+ILE+YDN+IWKELEKPDAM PDVYLNALGLMLRLFVRG++DPCEGRLKIL
Sbjct: 241 YLEANSRLSRILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVRGEYDPCEGRLKIL 300

Query: 301 ANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSRFVQCSLIAFLFIYMYVS 360
           A VLTDKANWHL+WHFDVL SWALAKAG+ FAAEELLGSLKSR   CS++  L  Y++V 
Sbjct: 301 AKVLTDKANWHLEWHFDVLTSWALAKAGQIFAAEELLGSLKSR--SCSIL-LLVSYLHVC 360

Query: 361 LWLFVYCYRLFLCRLLKMTPQKREKMQRGMLV 393
            ++  Y Y LFL RLLKMTP++REKMQRGML+
Sbjct: 361 GFMAQY-YLLFLRRLLKMTPKRREKMQRGMLL 388

[Close]

BLAST of Lsi04G004890 vs. NCBI nr
Match: XP_038891808.1 (tetratricopeptide repeat protein 38 isoform X3 [Benincasa hispida])

HSP 1 Score: 669.1 bits (1725), Expect = 2.4e-188
Identity = 324/392 (82.65%), Postives = 349/392 (89.03%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           ME G+KLTKWGY+IRTSSDACISAINAFYDQVLSYGRKRSVIL+ATVHDKDC+LANVLA 
Sbjct: 1   MEGGVKLTKWGYQIRTSSDACISAINAFYDQVLSYGRKRSVILDATVHDKDCVLANVLAV 60

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           HFLSSS+PSRVHHHLQAAKA LDRATPYEKAVFDAISCL+SN+RDDNVAVELH+ELLK F
Sbjct: 61  HFLSSSDPSRVHHHLQAAKAGLDRATPYEKAVFDAISCLMSNNRDDNVAVELHSELLKKF 120

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL+SLKRAQ+LCFY+G+AD+SLALVQQVLPQNQEEGFIYGMLAF LLELG MEEAEKA
Sbjct: 121 PKDLLSLKRAQLLCFYMGNADLSLALVQQVLPQNQEEGFIYGMLAFSLLELGYMEEAEKA 180

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           AR+GLDINKKDGWAQHALCH+LQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHV LC
Sbjct: 181 ARRGLDINKKDGWAQHALCHVLQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVALC 240

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKIL 300
           YLEANS LS+ILE+YDN+IWKELEKPDAM PDVYLNALGLMLRLFVRG++DPCEGRLKIL
Sbjct: 241 YLEANSRLSRILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVRGEYDPCEGRLKIL 300

Query: 301 ANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSRFVQCSLIAFLFIYMYVS 360
           A VLTDKANWHL+WHFDVL SWALAKAG+ FAAEELLGSLKS                  
Sbjct: 301 AKVLTDKANWHLEWHFDVLTSWALAKAGQIFAAEELLGSLKS------------------ 360

Query: 361 LWLFVYCYRLFLCRLLKMTPQKREKMQRGMLV 393
                        RLLKMTP++REKMQRGML+
Sbjct: 361 -------------RLLKMTPKRREKMQRGMLL 361

[Close]

BLAST of Lsi04G004890 vs. NCBI nr
Match: XP_004135208.1 (tetratricopeptide repeat protein 38 [Cucumis sativus] >KGN51864.1 hypothetical protein Csa_007943 [Cucumis sativus])

HSP 1 Score: 664.8 bits (1714), Expect = 4.6e-187
Identity = 322/392 (82.14%), Postives = 344/392 (87.76%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           MEDG+KLTKWGY IRTSSD CISAINAFYDQVLSYGRKRSVILEATVHDKDC+LANVL A
Sbjct: 1   MEDGVKLTKWGYGIRTSSDDCISAINAFYDQVLSYGRKRSVILEATVHDKDCVLANVLGA 60

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           HFLSSS+PSR H+HLQ AKA LDRATPYEKAVFDAISCL+SNDRDDNVAVELHTELLKNF
Sbjct: 61  HFLSSSDPSRAHYHLQTAKAGLDRATPYEKAVFDAISCLMSNDRDDNVAVELHTELLKNF 120

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL SLKRAQ+LCFYLGSAD+SLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLSSLKRAQVLCFYLGSADLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           AR+GLDINKKDGWAQHALCH+LQYRCHFKEAVEFME CSPSW DC+SFMVTHNWWHV LC
Sbjct: 181 ARRGLDINKKDGWAQHALCHVLQYRCHFKEAVEFMETCSPSWHDCVSFMVTHNWWHVALC 240

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKIL 300
           YLEANSPLSKILE+YDN+IWKELEKPDA+ P+VYLNALGLMLRLFVRG++DPCEGRLKIL
Sbjct: 241 YLEANSPLSKILEIYDNYIWKELEKPDAIGPEVYLNALGLMLRLFVRGEYDPCEGRLKIL 300

Query: 301 ANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSRFVQCSLIAFLFIYMYVS 360
           ANVLTDKANWHL+WHFD+L  WALAKAGE FAA+ELLGSLKS                  
Sbjct: 301 ANVLTDKANWHLEWHFDILTLWALAKAGEIFAADELLGSLKS------------------ 360

Query: 361 LWLFVYCYRLFLCRLLKMTPQKREKMQRGMLV 393
                        RL KMT +KREKMQR +L+
Sbjct: 361 -------------RLSKMTAKKREKMQRRVLL 361

[Close]

BLAST of Lsi04G004890 vs. NCBI nr
Match: XP_022956844.1 (tetratricopeptide repeat protein 38-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 661.0 bits (1704), Expect = 6.7e-186
Identity = 317/392 (80.87%), Postives = 348/392 (88.78%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           MEDGLKLTKWGYE+RTSSDACISAINAFYDQVLSYGR+RSVILEA VHDK C+LANV AA
Sbjct: 1   MEDGLKLTKWGYEVRTSSDACISAINAFYDQVLSYGRRRSVILEAPVHDKHCVLANVFAA 60

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           +FLSSS+PSRVHHHLQAAK  LDRATPYEKAV+DAI+CL+SNDRDDNVAVEL T+LLK+F
Sbjct: 61  YFLSSSDPSRVHHHLQAAKPGLDRATPYEKAVYDAINCLMSNDRDDNVAVELLTQLLKSF 120

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL+SLK+AQ+LCFY+G+ D+SLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA
Sbjct: 121 PKDLLSLKKAQVLCFYMGNPDLSLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           AR+GLDINKKDGWAQHALCH+LQYRC FKEAVEFMEACSP+WSDCLSF+VTHNWWHV LC
Sbjct: 181 ARRGLDINKKDGWAQHALCHVLQYRCRFKEAVEFMEACSPTWSDCLSFLVTHNWWHVALC 240

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKIL 300
           YLEANSPLSKILE+YDN+IWKELEKPDAM PDVYLNALGLMLRLFVRG+F PCEGRLKIL
Sbjct: 241 YLEANSPLSKILEIYDNYIWKELEKPDAMGPDVYLNALGLMLRLFVRGEFGPCEGRLKIL 300

Query: 301 ANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSRFVQCSLIAFLFIYMYVS 360
           ANVLTDKANWHL+WHFD+L +WALAK+GE FAAEELLGSLKS                  
Sbjct: 301 ANVLTDKANWHLEWHFDLLTTWALAKSGEIFAAEELLGSLKS------------------ 360

Query: 361 LWLFVYCYRLFLCRLLKMTPQKREKMQRGMLV 393
                        R+LKMTP+K+EKMQRGML+
Sbjct: 361 -------------RMLKMTPKKQEKMQRGMLL 361

[Close]

BLAST of Lsi04G004890 vs. TAIR 10
Match: AT1G27150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 476.1 bits (1224), Expect = 2.8e-134
Identity = 220/343 (64.14%), Postives = 276/343 (80.47%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           ME  ++  +WGYE+ TSSDACI AIN+++ QVLSYGRKR VILEA ++DKDC+L ++LAA
Sbjct: 1   MEKTVRCVRWGYEVNTSSDACIDAINSYFQQVLSYGRKRKVILEAPLYDKDCVLGSILAA 60

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           HFLSSS+PSR + +++AA ++L+++TPYEKAV++A++ L+S DRDD++A E+HT+LLK F
Sbjct: 61  HFLSSSDPSRANSYVEAAASNLEQSTPYEKAVYEAVTYLISEDRDDDLAFEMHTKLLKRF 120

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL SLKRAQ+L FY+G  D  L LVQQVLP NQEE +I+G+LAFPLLELG MEEA  A
Sbjct: 121 PKDLASLKRAQLLSFYMGQPDPFLGLVQQVLPANQEESYIHGLLAFPLLELGRMEEAAAA 180

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           +RKG +INK+D WA H LCH+LQ+ C FKEAVEFMEA + +W  C SFM THNWWHV LC
Sbjct: 181 SRKGYEINKEDAWAHHCLCHVLQHECRFKEAVEFMEALAGTWPSCSSFMYTHNWWHVALC 240

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDPCEGRLKIL 300
           YLE  SP+SK+ E+YD+HIWKELEK DA+ P+VYLNALGL++RL VR   D  E RLK L
Sbjct: 241 YLEGGSPMSKVEEIYDHHIWKELEKDDAVPPEVYLNALGLLIRLDVRDALDGFEDRLKNL 300

Query: 301 ANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSR 344
           A  LT++ANW+L+WH D+LI WALAK GE   A ELL  LK R
Sbjct: 301 AVRLTNQANWYLEWHLDILIVWALAKVGETSRAHELLEGLKFR 343

[Close]

BLAST of Lsi04G004890 vs. TAIR 10
Match: AT1G27110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 399.4 bits (1025), Expect = 3.4e-111
Identity = 191/344 (55.52%), Postives = 252/344 (73.26%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           M++  +    GYE+ TSSD CI++IN++ DQVL YGR++ VILEA  +D DC+LAN+LAA
Sbjct: 12  MKEESRFVSCGYEVNTSSDDCIASINSYSDQVLGYGREKKVILEAPNYDNDCVLANILAA 71

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           H+LSS +P R   +  AA++ L +AT YEKAVF+A+S LLS + DD+VA+ELH++LLK F
Sbjct: 72  HYLSSFDPVRARSYALAAESRLGKATLYEKAVFEAVSYLLSENMDDDVALELHSKLLKKF 131

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL+S KR + LC Y+G  D+SL L +++LPQN+ + ++ GMLAF L+ELG + EAE+A
Sbjct: 132 PKDLLSWKRVETLCSYMGRHDLSLPLFRKILPQNEGQVYVNGMLAFCLIELGHLREAEEA 191

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           ARKG +IN+ D WA HALCH+LQ  C FKEAV+FME  S SW  C S   +HNWWHV +C
Sbjct: 192 ARKGCEINENDSWAHHALCHVLQTECRFKEAVKFMEEHSDSWDSCSSLRFSHNWWHVAVC 251

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDP-CEGRLKI 300
           YLE  S +SK+ E+YD+ +WKELEK DA+  DVY +ALGL+LRL  RG  D   + RL+ 
Sbjct: 252 YLEGGSHISKVEEVYDHQMWKELEKDDAVARDVYTDALGLLLRLDTRGKLDDGFQDRLEK 311

Query: 301 LANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSR 344
           LA+ LTDKA W+ DW FD+   WAL+K  +   A ELL  LKSR
Sbjct: 312 LADSLTDKAMWYQDWLFDITTIWALSKVEKTSLAHELLEGLKSR 355

[Close]

BLAST of Lsi04G004890 vs. TAIR 10
Match: AT1G27110.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 399.4 bits (1025), Expect = 3.4e-111
Identity = 191/344 (55.52%), Postives = 252/344 (73.26%), Query Frame = 0


Query: 1   MEDGLKLTKWGYEIRTSSDACISAINAFYDQVLSYGRKRSVILEATVHDKDCMLANVLAA 60
           M++  +    GYE+ TSSD CI++IN++ DQVL YGR++ VILEA  +D DC+LAN+LAA
Sbjct: 12  MKEESRFVSCGYEVNTSSDDCIASINSYSDQVLGYGREKKVILEAPNYDNDCVLANILAA 71

Query: 61  HFLSSSNPSRVHHHLQAAKASLDRATPYEKAVFDAISCLLSNDRDDNVAVELHTELLKNF 120
           H+LSS +P R   +  AA++ L +AT YEKAVF+A+S LLS + DD+VA+ELH++LLK F
Sbjct: 72  HYLSSFDPVRARSYALAAESRLGKATLYEKAVFEAVSYLLSENMDDDVALELHSKLLKKF 131

Query: 121 PKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGMLAFPLLELGCMEEAEKA 180
           PKDL+S KR + LC Y+G  D+SL L +++LPQN+ + ++ GMLAF L+ELG + EAE+A
Sbjct: 132 PKDLLSWKRVETLCSYMGRHDLSLPLFRKILPQNEGQVYVNGMLAFCLIELGHLREAEEA 191

Query: 181 ARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSDCLSFMVTHNWWHVTLC 240
           ARKG +IN+ D WA HALCH+LQ  C FKEAV+FME  S SW  C S   +HNWWHV +C
Sbjct: 192 ARKGCEINENDSWAHHALCHVLQTECRFKEAVKFMEEHSDSWDSCSSLRFSHNWWHVAVC 251

Query: 241 YLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRLFVRGDFDP-CEGRLKI 300
           YLE  S +SK+ E+YD+ +WKELEK DA+  DVY +ALGL+LRL  RG  D   + RL+ 
Sbjct: 252 YLEGGSHISKVEEVYDHQMWKELEKDDAVARDVYTDALGLLLRLDTRGKLDDGFQDRLEK 311

Query: 301 LANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSR 344
           LA+ LTDKA W+ DW FD+   WAL+K  +   A ELL  LKSR
Sbjct: 312 LADSLTDKAMWYQDWLFDITTIWALSKVEKTSLAHELLEGLKSR 355

[Close]

BLAST of Lsi04G004890 vs. TAIR 10
Match: AT1G27110.3 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 290.0 bits (741), Expect = 2.9e-78
Identity = 136/240 (56.67%), Postives = 175/240 (72.92%), Query Frame = 0


Query: 105 DDNVAVELHTELLKNFPKDLMSLKRAQMLCFYLGSADISLALVQQVLPQNQEEGFIYGML 164
           DD+VA+ELH++LLK FPKDL+S KR + LC Y+G  D+SL L +++LPQN+ + ++ GML
Sbjct: 2   DDDVALELHSKLLKKFPKDLLSWKRVETLCSYMGRHDLSLPLFRKILPQNEGQVYVNGML 61

Query: 165 AFPLLELGCMEEAEKAARKGLDINKKDGWAQHALCHILQYRCHFKEAVEFMEACSPSWSD 224
           AF L+ELG + EAE+AARKG +IN+ D WA HALCH+LQ  C FKEAV+FME  S SW  
Sbjct: 62  AFCLIELGHLREAEEAARKGCEINENDSWAHHALCHVLQTECRFKEAVKFMEEHSDSWDS 121

Query: 225 CLSFMVTHNWWHVTLCYLEANSPLSKILELYDNHIWKELEKPDAMRPDVYLNALGLMLRL 284
           C S   +HNWWHV +CYLE  S +SK+ E+YD+ +WKELEK DA+  DVY +ALGL+LRL
Sbjct: 122 CSSLRFSHNWWHVAVCYLEGGSHISKVEEVYDHQMWKELEKDDAVARDVYTDALGLLLRL 181

Query: 285 FVRGDFDP-CEGRLKILANVLTDKANWHLDWHFDVLISWALAKAGENFAAEELLGSLKSR 344
             RG  D   + RL+ LA+ LTDKA W+ DW FD+   WAL+K  +   A ELL  LKSR
Sbjct: 182 DTRGKLDDGFQDRLEKLADSLTDKAMWYQDWLFDITTIWALSKVEKTSLAHELLEGLKSR 241

The following BLAST results are available for this feature:

BLAST of Lsi04G004890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5R3I4	3.0e-19	30.98	Tetratricopeptide repeat protein 38 OS=Homo sapiens OX=9606 GN=TTC38 PE=1 SV=1	[more]

BLAST of Lsi04G004890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSI1	2.2e-187	82.14	Tetratricopeptide repeat protein 38 OS=Cucumis sativus OX=3659 GN=Csa_5G604090 P...	[more]
A0A6J1GYC7	3.2e-186	80.87	Tetratricopeptide repeat protein 38 OS=Cucurbita moschata OX=3662 GN=LOC11145841...	[more]
A0A6J1H084	3.2e-186	80.87	Tetratricopeptide repeat protein 38 OS=Cucurbita moschata OX=3662 GN=LOC11145841...	[more]
A0A6J1INE6	5.5e-186	80.61	Tetratricopeptide repeat protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111477101 ...	[more]
A0A6J1IPU9	5.5e-186	80.61	Tetratricopeptide repeat protein 38 OS=Cucurbita maxima OX=3661 GN=LOC111477101 ...	[more]

BLAST of Lsi04G004890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891807.1	2.5e-193	85.46	tetratricopeptide repeat protein 38 isoform X2 [Benincasa hispida]	[more]
XP_038891806.1	2.5e-193	85.46	tetratricopeptide repeat protein 38 isoform X1 [Benincasa hispida]	[more]
XP_038891808.1	2.4e-188	82.65	tetratricopeptide repeat protein 38 isoform X3 [Benincasa hispida]	[more]
XP_004135208.1	4.6e-187	82.14	tetratricopeptide repeat protein 38 [Cucumis sativus] >KGN51864.1 hypothetical p...	[more]
XP_022956844.1	6.7e-186	80.87	tetratricopeptide repeat protein 38-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Lsi04G004890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27150.1	2.8e-134	64.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G27110.1	3.4e-111	55.52	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G27110.2	3.4e-111	55.52	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G27110.3	2.9e-78	56.67	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 65..220 e-value: 1.7E-10 score: 42.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 101..258
IPR033891	Tetratricopeptide repeat protein 38	PANTHER	PTHR16263	TETRATRICOPEPTIDE REPEAT PROTEIN 38	coord: 2..345
IPR033891	Tetratricopeptide repeat protein 38	CDD	cd05804	StaR_like	coord: 48..343 e-value: 5.71434E-89 score: 271.465
None	No IPR available	PANTHER	PTHR16263:SF9	BNAA09G29550D PROTEIN	coord: 2..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G004890.1	Lsi04G004890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding