Lsi04G004630 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G004630
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr04: 4393389 .. 4394127 (-)
RNA-Seq Expression	Lsi04G004630
Synteny	Lsi04G004630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCAAAAAAAGATATATCAGATGGTTCTGATTGCTGCACTTGGACTTTTATTCCTACTTTGATTGGTACTTATGAGCACGTTAAGAAATATCGCAAAGCACCCAACAATTGCTTTGATCGATTCCTTCATCACACTCAAAGAGCTCAAACAATATTCACACCCAATTGCTCAATAATGGCCTTTTCAATGATTGCCAACTTTTAGGCCAATTTGTTGCATCCATTGCCCTTAAAACCCCCACCAATCTAGTTTATTCTAATCAAATTTTGGACCAATGTGCCGACCCAACAATTCCATGATCAGAGCCTGTTCGAAAAGGTTAACCCCAACAAAAGCTTCCAGTTTTACAACAAAATTCTCCAATCCAATGATGTTATGTAACAGACAATTACACTTTCAATTTTCTGGTTCGCACTTGCGCCCAATTGTCTACTTGTGAAGCAGGTCTAACTGTTCATGGTGCACTTATCAAACATGGTTTTGAATTTGACCCAGATGTTCAAAGTGGGTTAATTTTTATGTATGCTGAAATGGGTTGTTTCATGTTATCGTGTGTTTGAATCAGTTGAAGTTAGATATAATTTGTCAGACGGCCATAGTGAGTGCTTGTGCAAAATGTGGTGATACTGATTTTGCACGAGAGCTGTTCGACGTAATGCTTCAAAGGGATTCTGTGTCATGGAATGCTATGATTGCTGGTTATGCACAGAGGGGCAATCAAGGGAAGCTTTGA

mRNA sequence

ATGCAGTCAAAAAAAGATATATCAGATGGTTCTGATTGCTGCACTTGGACTTTTATTCCTACTTTGATTGACAATTACACTTTCAATTTTCTGGTTCGCACTTGCGCCCAATTGTCTACTTGTGAAGCAGGTCTAACTGTTCATGGTGCACTTATCAAACATGGTTTTGAATTTGACCCAGATGTTCAAAATATAATTTGTCAGACGGCCATAGTGAGTGCTTGTGCAAAATGTGGTGATACTGATTTTGCACGAGAGCTGTTCGACGTAATGCTTCAAAGGGATTCTGTGTCATGGAATGCTATGATTGCTGGTTATGCACAGAGGGGCAATCAAGGGAAGCTTTGA

Coding sequence (CDS)

ATGCAGTCAAAAAAAGATATATCAGATGGTTCTGATTGCTGCACTTGGACTTTTATTCCTACTTTGATTGACAATTACACTTTCAATTTTCTGGTTCGCACTTGCGCCCAATTGTCTACTTGTGAAGCAGGTCTAACTGTTCATGGTGCACTTATCAAACATGGTTTTGAATTTGACCCAGATGTTCAAAATATAATTTGTCAGACGGCCATAGTGAGTGCTTGTGCAAAATGTGGTGATACTGATTTTGCACGAGAGCTGTTCGACGTAATGCTTCAAAGGGATTCTGTGTCATGGAATGCTATGATTGCTGGTTATGCACAGAGGGGCAATCAAGGGAAGCTTTGA

Protein sequence

MQSKKDISDGSDCCTWTFIPTLIDNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQNIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRGNQGKL

Homology

[Close]

BLAST of Lsi04G004630 vs. ExPASy Swiss-Prot
Match: Q9FND7 (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-21
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYT NFLV+ C  L   E GL VHG  I+ GF+ DP VQ                    
Sbjct: 107 DNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVF 166

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRG 111
                 + +C+TA+V+ACA+CGD  FAR+LF+ M +RD ++WNAMI+GYAQ G
Sbjct: 167 NSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVG 219

[Close]

BLAST of Lsi04G004630 vs. ExPASy Swiss-Prot
Match: O64705 (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E23 PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-14
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQNIICQTAIVSACAKCGDTDF 83
           D +T+NF+   CA+L     G +VH +L K G E D  + +     +++   AKCG   +
Sbjct: 131 DKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINH-----SLIMMYAKCGQVGY 190

Query: 84  ARELFDVMLQRDSVSWNAMIAGYAQRG 111
           AR+LFD + +RD+VSWN+MI+GY++ G
Sbjct: 191 ARKLFDEITERDTVSWNSMISGYSEAG 212

[Close]

BLAST of Lsi04G004630 vs. ExPASy Swiss-Prot
Match: Q9M9E2 (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H73 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.2e-14
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQNIICQTAIVSACAKCGDTDF 83
           D YTF  ++RTC  +     G  VH  ++++G+E D DV N     A+++   KCGD   
Sbjct: 195 DVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVN-----ALITMYVKCGDVKS 254

Query: 84  ARELFDVMLQRDSVSWNAMIAGYAQRG 111
           AR LFD M +RD +SWNAMI+GY + G
Sbjct: 255 ARLLFDRMPRRDIISWNAMISGYFENG 276

[Close]

BLAST of Lsi04G004630 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQNIICQTAIVSACAKCGDTDF 83
           D YTF F +  CA+      G+ +HG ++K G+  D  VQN     ++V   A+CG+ D 
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQN-----SLVHFYAECGELDS 192

Query: 84  ARELFDVMLQRDSVSWNAMIAGYAQR 110
           AR++FD M +R+ VSW +MI GYA+R
Sbjct: 193 ARKVFDEMSERNVVSWTSMICGYARR 213

[Close]

BLAST of Lsi04G004630 vs. ExPASy Swiss-Prot
Match: Q9LXF2 (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQNIICQTAIVSACAKCGDTDF 83
           D YTF F+++ C++L     G   HG +++HGF  +  V+N     A++   A CGD   
Sbjct: 111 DRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKN-----ALILFHANCGDLGI 170

Query: 84  ARELFDVMLQRDSVSWNAMIAGYAQRG 111
           A ELFD   +   V+W++M +GYA+RG
Sbjct: 171 ASELFDDSAKAHKVAWSSMTSGYAKRG 192

[Close]

BLAST of Lsi04G004630 vs. ExPASy TrEMBL
Match: A0A6J1DA54 (putative pentatricopeptide repeat-containing protein At5g40405 OS=Momordica charantia OX=3673 GN=LOC111019070 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 75/113 (66.37%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYTFNFLVRTCAQLS CEAG TVHGALIKHGFEFDP VQ                    
Sbjct: 110 DNYTFNFLVRTCAQLSACEAGPTVHGALIKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVF 169

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRG 111
                 +++CQTA+VSACAKCGDT FAR+LFD M QRDS+SWNAMIAGYAQRG
Sbjct: 170 ESVREPDLVCQTAMVSACAKCGDTGFARDLFDEMPQRDSISWNAMIAGYAQRG 222

[Close]

BLAST of Lsi04G004630 vs. ExPASy TrEMBL
Match: A0A6J1HYM9 (putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucurbita maxima OX=3661 GN=LOC111467805 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.2e-32
Identity = 74/113 (65.49%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYTFNFLVRT AQLS CEAG TVHGAL KHGFEFDP VQ                    
Sbjct: 110 DNYTFNFLVRTSAQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLSSCYRVF 169

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRG 111
                 +++CQTA+VSACAKCGDTD+AR+LFD M QRDSVSWNAMIAGYAQRG
Sbjct: 170 ESVQNPDVVCQTAMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRG 222

[Close]

BLAST of Lsi04G004630 vs. ExPASy TrEMBL
Match: A0A6J1FZH3 (putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucurbita moschata OX=3662 GN=LOC111449343 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.4e-32
Identity = 72/113 (63.72%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYTFNFLVRT AQLS CEAG TVHGAL KHGFEFDP VQ                    
Sbjct: 110 DNYTFNFLVRTSAQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVF 169

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRG 111
                 +++CQTA+VSACAKCGDTD+AR+LFD M QRDS+SWNAMIAGY QRG
Sbjct: 170 ESVQNPDVVCQTAMVSACAKCGDTDYARQLFDEMPQRDSISWNAMIAGYTQRG 222

[Close]

BLAST of Lsi04G004630 vs. ExPASy TrEMBL
Match: A0A5A7SZ47 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00320 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.3e-28
Identity = 69/113 (61.06%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYTFNFLVRTCAQ S CEAG  VHGALIKHGFE+DP V+                    
Sbjct: 31  DNYTFNFLVRTCAQ-SACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMGCLSSCHRVF 90

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRG 111
                 +++CQT +VSACAKCGD  FAR LFD M QRD VSWNAMIAGYAQRG
Sbjct: 91  ESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDYVSWNAMIAGYAQRG 142

[Close]

BLAST of Lsi04G004630 vs. ExPASy TrEMBL
Match: A0A5N6R2U6 (DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_009040 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.3e-28
Identity = 68/117 (58.12%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYTFNFLVRTC+QL   E G +VHGALIKHGFE DP VQ                    
Sbjct: 110 DNYTFNFLVRTCSQLLARETGPSVHGALIKHGFEHDPHVQSGLIFMYAELGCLSSCHRVF 169

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRGNQGK 115
                 +++CQTA+VSACAKCGD  FARELFDVM QRD ++WNAMIAGYAQ G   K
Sbjct: 170 GEIPNPDLVCQTAMVSACAKCGDVGFARELFDVMPQRDPIAWNAMIAGYAQSGKSRK 226

[Close]

BLAST of Lsi04G004630 vs. NCBI nr
Match: XP_038891785.1 (putative pentatricopeptide repeat-containing protein At5g40405 [Benincasa hispida])

HSP 1 Score: 155.6 bits (392), Expect = 2.6e-34
Identity = 78/113 (69.03%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYTFNFLVRTCAQLS CEAG TVHGALIKHGFEFDP VQ                    
Sbjct: 110 DNYTFNFLVRTCAQLSACEAGPTVHGALIKHGFEFDPHVQSGLIFMYAEMGCLSSCYHVF 169

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRG 111
                 +I+CQTA+VSACAKCGDTDFAR LFD M QRDSVSWNAMIAGYAQRG
Sbjct: 170 QSVHEPDIVCQTAMVSACAKCGDTDFARNLFDAMPQRDSVSWNAMIAGYAQRG 222

[Close]

BLAST of Lsi04G004630 vs. NCBI nr
Match: XP_022151045.1 (putative pentatricopeptide repeat-containing protein At5g40405 [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 3.7e-33
Identity = 75/113 (66.37%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYTFNFLVRTCAQLS CEAG TVHGALIKHGFEFDP VQ                    
Sbjct: 110 DNYTFNFLVRTCAQLSACEAGPTVHGALIKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVF 169

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRG 111
                 +++CQTA+VSACAKCGDT FAR+LFD M QRDS+SWNAMIAGYAQRG
Sbjct: 170 ESVREPDLVCQTAMVSACAKCGDTGFARDLFDEMPQRDSISWNAMIAGYAQRG 222

[Close]

BLAST of Lsi04G004630 vs. NCBI nr
Match: XP_022968643.1 (putative pentatricopeptide repeat-containing protein At5g40405 [Cucurbita maxima])

HSP 1 Score: 149.1 bits (375), Expect = 2.4e-32
Identity = 74/113 (65.49%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYTFNFLVRT AQLS CEAG TVHGAL KHGFEFDP VQ                    
Sbjct: 110 DNYTFNFLVRTSAQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLSSCYRVF 169

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRG 111
                 +++CQTA+VSACAKCGDTD+AR+LFD M QRDSVSWNAMIAGYAQRG
Sbjct: 170 ESVQNPDVVCQTAMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRG 222

[Close]

BLAST of Lsi04G004630 vs. NCBI nr
Match: XP_023542265.1 (putative pentatricopeptide repeat-containing protein At5g40405 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.1 bits (375), Expect = 2.4e-32
Identity = 74/113 (65.49%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYTFNFLVRT AQLS CEAG TVHGAL KHGFEFDP VQ                    
Sbjct: 110 DNYTFNFLVRTSAQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVF 169

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRG 111
                 +++CQTA+VSACAKCGDTD+AR+LFD M QRDSVSWNAMIAGYAQRG
Sbjct: 170 ESVQNPDVVCQTAMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYAQRG 222

[Close]

BLAST of Lsi04G004630 vs. NCBI nr
Match: KAG6574109.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.5 bits (371), Expect = 7.0e-32
Identity = 73/113 (64.60%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYTFNFLVRT AQLS CEAG TVHGAL KHGFEFDP VQ                    
Sbjct: 110 DNYTFNFLVRTSAQLSACEAGRTVHGALFKHGFEFDPHVQSGLIFMYAEMGCLNSCYRVF 169

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRG 111
                 +++CQTA+VSACAKCGDTD+AR+LFD M QRDSVSWNAMIAGY QRG
Sbjct: 170 ESVQNPDVVCQTAMVSACAKCGDTDYARQLFDEMPQRDSVSWNAMIAGYTQRG 222

[Close]

BLAST of Lsi04G004630 vs. TAIR 10
Match: AT5G40405.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-22
Identity = 51/113 (45.13%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQ-------------------- 83
           DNYT NFLV+ C  L   E GL VHG  I+ GF+ DP VQ                    
Sbjct: 107 DNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVF 166

Query: 84  ------NIICQTAIVSACAKCGDTDFARELFDVMLQRDSVSWNAMIAGYAQRG 111
                 + +C+TA+V+ACA+CGD  FAR+LF+ M +RD ++WNAMI+GYAQ G
Sbjct: 167 NSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVG 219

[Close]

BLAST of Lsi04G004630 vs. TAIR 10
Match: AT2G34400.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-15
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQNIICQTAIVSACAKCGDTDF 83
           D +T+NF+   CA+L     G +VH +L K G E D  + +     +++   AKCG   +
Sbjct: 131 DKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINH-----SLIMMYAKCGQVGY 190

Query: 84  ARELFDVMLQRDSVSWNAMIAGYAQRG 111
           AR+LFD + +RD+VSWN+MI+GY++ G
Sbjct: 191 ARKLFDEITERDTVSWNSMISGYSEAG 212

[Close]

BLAST of Lsi04G004630 vs. TAIR 10
Match: AT1G15510.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 3.7e-15
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQNIICQTAIVSACAKCGDTDF 83
           D YTF  ++RTC  +     G  VH  ++++G+E D DV N     A+++   KCGD   
Sbjct: 195 DVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVN-----ALITMYVKCGDVKS 254

Query: 84  ARELFDVMLQRDSVSWNAMIAGYAQRG 111
           AR LFD M +RD +SWNAMI+GY + G
Sbjct: 255 ARLLFDRMPRRDIISWNAMISGYFENG 276

[Close]

BLAST of Lsi04G004630 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 9.2e-14
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQNIICQTAIVSACAKCGDTDF 83
           D YTF F +  CA+      G+ +HG ++K G+  D  VQN     ++V   A+CG+ D 
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQN-----SLVHFYAECGELDS 192

Query: 84  ARELFDVMLQRDSVSWNAMIAGYAQR 110
           AR++FD M +R+ VSW +MI GYA+R
Sbjct: 193 ARKVFDEMSERNVVSWTSMICGYARR 213

[Close]

BLAST of Lsi04G004630 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). )

HSP 1 Score: 73.9 bits (180), Expect = 9.2e-14
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 24  DNYTFNFLVRTCAQLSTCEAGLTVHGALIKHGFEFDPDVQNIICQTAIVSACAKCGDTDF 83
           D YTF F +  CA+      G+ +HG ++K G+  D  VQN     ++V   A+CG+ D 
Sbjct: 133 DKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQN-----SLVHFYAECGELDS 192

Query: 84  ARELFDVMLQRDSVSWNAMIAGYAQR 110
           AR++FD M +R+ VSW +MI GYA+R
Sbjct: 193 ARKVFDEMSERNVVSWTSMICGYARR 213

The following BLAST results are available for this feature:

BLAST of Lsi04G004630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FND7	3.4e-21	45.13	Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis th...	[more]
O64705	3.1e-14	40.23	Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana OX...	[more]
Q9M9E2	5.2e-14	43.68	Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop...	[more]
Q9LUJ2	1.3e-12	41.86	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX...	[more]
Q9LXF2	1.7e-12	37.93	Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX...	[more]

BLAST of Lsi04G004630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DA54	1.8e-33	66.37	putative pentatricopeptide repeat-containing protein At5g40405 OS=Momordica char...	[more]
A0A6J1HYM9	1.2e-32	65.49	putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucurbita maxi...	[more]
A0A6J1FZH3	4.4e-32	63.72	putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucurbita mosc...	[more]
A0A5A7SZ47	2.3e-28	61.06	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A5N6R2U6	2.3e-28	58.12	DYW_deaminase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_...	[more]

BLAST of Lsi04G004630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891785.1	2.6e-34	69.03	putative pentatricopeptide repeat-containing protein At5g40405 [Benincasa hispid...	[more]
XP_022151045.1	3.7e-33	66.37	putative pentatricopeptide repeat-containing protein At5g40405 [Momordica charan...	[more]
XP_022968643.1	2.4e-32	65.49	putative pentatricopeptide repeat-containing protein At5g40405 [Cucurbita maxima...	[more]
XP_023542265.1	2.4e-32	65.49	putative pentatricopeptide repeat-containing protein At5g40405 [Cucurbita pepo s...	[more]
KAG6574109.1	7.0e-32	64.60	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]

BLAST of Lsi04G004630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40405.1	2.4e-22	45.13	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G34400.1	2.2e-15	40.23	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G15510.1	3.7e-15	43.68	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G22690.1	9.2e-14	41.86	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012...	[more]
AT3G22690.2	9.2e-14	41.86	INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic pro...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 69..94 e-value: 4.7E-4 score: 20.2 coord: 97..111 e-value: 0.017 score: 15.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 67..95 e-value: 1.7E-4 score: 19.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 64..98 score: 8.6266
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 20..114 e-value: 7.2E-17 score: 63.7
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 21..64 coord: 63..111
None	No IPR available	PANTHER	PTHR47929:SF6	BNAA04G15120D PROTEIN	coord: 63..111
None	No IPR available	PANTHER	PTHR47929:SF6	BNAA04G15120D PROTEIN	coord: 21..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G004630.1	Lsi04G004630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding