Lsi04G004620 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G004620
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDYW_deaminase domain-containing protein
Locationchr04: 4392691 .. 4393116 (-)
RNA-Seq ExpressionLsi04G004620
SyntenyLsi04G004620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGTTATGGTCAGAAGTGCCTTAAACTCGTTTCACTTATGAAACGAGAAGGAATTGTGCCTAATGAAGTCACATTCATTTATGTTCTTAGAGGTTGTAGTGTGGTCGGATTCTTCGATGAAGGTCGTTCACATTTTGACTCAATGAAAAGAGACCATGGCATTCAACCGCAGCTTGAGCACTATGGTTGTATGGTTGATTTATATAGTCGAGTAGGGCAATTAGATGAGGCTCTAAACTTCATCAACACCATGCCTCTTAAGCCACACGCGGGGGCTTGGGGAGCTTTGCTCAATGCCTGTAGAATGTACAAGAATATGGAGTTGGGCAAGTTTGCCTCGAGAAAACTGGTAGAGCTTGAAGCCAAGAATCACAGCGCCTACGTGCTATTATCAAACATCTACGCCGACACAAAGAACTAG

mRNA sequence

ATGAATGGTTATGGTCAGAAGTGCCTTAAACTCGTTTCACTTATGAAACGAGAAGGAATTGTGCCTAATGAAGTCACATTCATTTATGTTCTTAGAGGTTGTAGTGTGGTCGGATTCTTCGATGAAGGTCGTTCACATTTTGACTCAATGAAAAGAGACCATGGCATTCAACCGCAGCTTGAGCACTATGGTTGTATGGTTGATTTATATAGTCGAGTAGGGCAATTAGATGAGGCTCTAAACTTCATCAACACCATGCCTCTTAAGCCACACGCGGGGGCTTGGGGAGCTTTGCTCAATGCCTGTAGAATGTACAAGAATATGGAGTTGGGCAAGTTTGCCTCGAGAAAACTGGTAGAGCTTGAAGCCAAGAATCACAGCGCCTACGTGCTATTATCAAACATCTACGCCGACACAAAGAACTAG

Coding sequence (CDS)

ATGAATGGTTATGGTCAGAAGTGCCTTAAACTCGTTTCACTTATGAAACGAGAAGGAATTGTGCCTAATGAAGTCACATTCATTTATGTTCTTAGAGGTTGTAGTGTGGTCGGATTCTTCGATGAAGGTCGTTCACATTTTGACTCAATGAAAAGAGACCATGGCATTCAACCGCAGCTTGAGCACTATGGTTGTATGGTTGATTTATATAGTCGAGTAGGGCAATTAGATGAGGCTCTAAACTTCATCAACACCATGCCTCTTAAGCCACACGCGGGGGCTTGGGGAGCTTTGCTCAATGCCTGTAGAATGTACAAGAATATGGAGTTGGGCAAGTTTGCCTCGAGAAAACTGGTAGAGCTTGAAGCCAAGAATCACAGCGCCTACGTGCTATTATCAAACATCTACGCCGACACAAAGAACTAG

Protein sequence

MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQLEHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVELEAKNHSAYVLLSNIYADTKN
Homology
BLAST of Lsi04G004620 vs. ExPASy Swiss-Prot
Match: Q9FND7 (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.9e-54
Identity = 92/141 (65.25%), Postives = 119/141 (84.40%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNG+G+KCL+L SLMK++G+ PN VTF+ VLRGCSVVGF DEG+ HFDSM+ + GI+PQL
Sbjct: 318 MNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQL 377

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGC+VDLY+R G+L++A++ I  MP+KPHA  W +LL+A RMYKN+ELG  AS+K++E
Sbjct: 378 EHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLE 437

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LE  NH AYVLLSNIYAD+ +
Sbjct: 438 LETANHGAYVLLSNIYADSND 458

BLAST of Lsi04G004620 vs. ExPASy Swiss-Prot
Match: O81767 (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX=3702 GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 3.9e-35
Identity = 68/136 (50.00%), Postives = 96/136 (70.59%), Query Frame = 0

Query: 2   NGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQLE 61
           +G+G+K + L   M  EG+ P+ +TF+ +L  CS  G  DEG+  F+ M+ D+GI P L+
Sbjct: 530 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 589

Query: 62  HYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVEL 121
           HYGCMVD+Y R GQL+ AL FI +M L+P A  WGALL+ACR++ N++LGK AS  L E+
Sbjct: 590 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 649

Query: 122 EAKNHSAYVLLSNIYA 138
           E ++   +VLLSN+YA
Sbjct: 650 EPEHVGYHVLLSNMYA 665

BLAST of Lsi04G004620 vs. ExPASy Swiss-Prot
Match: Q9LND4 (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.5e-34
Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           +NG  ++ L     MK + +VPN VTF+ +L  CS  G   EG   F+SM RD+G+ P+ 
Sbjct: 390 INGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEE 449

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHY CMVDL  R G++ EA +FI+ MP+KP A AWGALL+ACR++K ++L    + KL+ 
Sbjct: 450 EHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLS 509

Query: 121 LEAKNHSAYVLLSNIYAD 139
           +E +  S YVLLSNIYAD
Sbjct: 510 MEPEKSSVYVLLSNIYAD 527

BLAST of Lsi04G004620 vs. ExPASy Swiss-Prot
Match: Q5G1T1 (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.3e-34
Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 0

Query: 2   NGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQLE 61
           +G+  + L+  + M  EG+ PNEVT++ +L  CS VG   EG  HF+SM  DH I+P++E
Sbjct: 553 HGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKME 612

Query: 62  HYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVEL 121
           HY CMVDL  R G L +A  FINTMP +     W   L ACR++ N ELGK A+RK++EL
Sbjct: 613 HYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEL 672

Query: 122 EAKNHSAYVLLSNIYA 138
           +    +AY+ LSNIYA
Sbjct: 673 DPNEPAAYIQLSNIYA 688

BLAST of Lsi04G004620 vs. ExPASy Swiss-Prot
Match: O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-33
Identity = 67/137 (48.91%), Postives = 94/137 (68.61%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           M+G     L L + MK+E + PNEVTF+ VL GCS  G  +EG+  F SM  ++ I P+L
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDL+ R   L EAL  I +MP+  +   WG+L++ACR++  +ELGKFA+++++E
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILE 541

Query: 121 LEAKNHSAYVLLSNIYA 138
           LE  +  A VL+SNIYA
Sbjct: 542 LEPDHDGALVLMSNIYA 558

BLAST of Lsi04G004620 vs. ExPASy TrEMBL
Match: A0A5A7SZ47 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00320 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.8e-67
Identity = 121/141 (85.82%), Postives = 131/141 (92.91%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYGQKCL+L SLMKREGI PNE+TFI VL+GCSVVGF DEGRSHFDSMKRDHGI+P+ 
Sbjct: 241 MNGYGQKCLELFSLMKREGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPKH 300

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+L+EALNFINTMPLKPHAGAWGALLNACRMYKNMELG+FASRKL+E
Sbjct: 301 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 360

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           +E KNH AYVLLSNIYADT N
Sbjct: 361 VEGKNHGAYVLLSNIYADTGN 381

BLAST of Lsi04G004620 vs. ExPASy TrEMBL
Match: A0A1S3BFJ2 (putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucumis melo OX=3656 GN=LOC103489076 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.8e-67
Identity = 121/141 (85.82%), Postives = 131/141 (92.91%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYGQKCL+L SLMKREGI PNE+TFI VL+GCSVVGF DEGRSHFDSMKRDHGI+P+ 
Sbjct: 320 MNGYGQKCLELFSLMKREGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPKH 379

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+L+EALNFINTMPLKPHAGAWGALLNACRMYKNMELG+FASRKL+E
Sbjct: 380 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 439

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           +E KNH AYVLLSNIYADT N
Sbjct: 440 VEGKNHGAYVLLSNIYADTGN 460

BLAST of Lsi04G004620 vs. ExPASy TrEMBL
Match: A0A6J1HYM9 (putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucurbita maxima OX=3661 GN=LOC111467805 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.4e-66
Identity = 121/141 (85.82%), Postives = 130/141 (92.20%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYG+KCL+L SLMKREGI PNE+TFI V+RGCSVVG  DEGR HFDSMKRD+ I+PQL
Sbjct: 321 MNGYGEKCLELFSLMKREGIAPNEITFISVIRGCSVVGLVDEGRLHFDSMKRDYDIEPQL 380

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+LDEALNFINTMP+KPHAGAWGALLNACRMYKNMELG+ ASRKLVE
Sbjct: 381 EHYGCMVDLYGRAGRLDEALNFINTMPIKPHAGAWGALLNACRMYKNMELGEVASRKLVE 440

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LEAKNH AYVLLSNIYADTKN
Sbjct: 441 LEAKNHGAYVLLSNIYADTKN 461

BLAST of Lsi04G004620 vs. ExPASy TrEMBL
Match: A0A0A0KSJ7 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604190 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.7e-66
Identity = 119/141 (84.40%), Postives = 129/141 (91.49%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYGQKCL+L S MK EGI PNE+TFI VL+GCSVVGF DEGRSHFDSMKRDHGI+P+L
Sbjct: 241 MNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRL 300

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+L+EALNFINTMPLKPHAGAWGALLNACRMYKNMELG+FASRKL+E
Sbjct: 301 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 360

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           +E KNH AYV LSNIYADT N
Sbjct: 361 VEGKNHGAYVSLSNIYADTGN 381

BLAST of Lsi04G004620 vs. ExPASy TrEMBL
Match: A0A6J1DA54 (putative pentatricopeptide repeat-containing protein At5g40405 OS=Momordica charantia OX=3673 GN=LOC111019070 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 119/141 (84.40%), Postives = 129/141 (91.49%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYG+KCL+L SLMK+EG  PNE+TFI ++RGCSVVG  DEGR HFDSMKRD+GI+PQL
Sbjct: 321 MNGYGEKCLELFSLMKKEGAAPNEITFISIIRGCSVVGLVDEGRLHFDSMKRDYGIEPQL 380

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+LDEALNFIN MPLKPHAGAWGALLNACRMYKNMELG+ ASRKLVE
Sbjct: 381 EHYGCMVDLYGRAGRLDEALNFINAMPLKPHAGAWGALLNACRMYKNMELGEVASRKLVE 440

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LEAKNH AYVLLSNIYADTKN
Sbjct: 441 LEAKNHGAYVLLSNIYADTKN 461

BLAST of Lsi04G004620 vs. NCBI nr
Match: XP_038891785.1 (putative pentatricopeptide repeat-containing protein At5g40405 [Benincasa hispida])

HSP 1 Score: 270.4 bits (690), Expect = 8.8e-69
Identity = 127/141 (90.07%), Postives = 132/141 (93.62%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYGQKCL+L SLMKREGI PNE+TFI VLRGCSVVGF DEGRSHFDSMKRDHGI+PQL
Sbjct: 321 MNGYGQKCLELFSLMKREGIAPNEITFISVLRGCSVVGFVDEGRSHFDSMKRDHGIEPQL 380

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+LDEALNFINTMPLKPHAGAWGALLNACRMYKNMELG+FASRKLVE
Sbjct: 381 EHYGCMVDLYGRAGRLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLVE 440

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LEAKN  AYVLLSNIYAD KN
Sbjct: 441 LEAKNQGAYVLLSNIYADMKN 461

BLAST of Lsi04G004620 vs. NCBI nr
Match: KAA0034379.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK15540.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66
Identity = 121/141 (85.82%), Postives = 131/141 (92.91%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYGQKCL+L SLMKREGI PNE+TFI VL+GCSVVGF DEGRSHFDSMKRDHGI+P+ 
Sbjct: 241 MNGYGQKCLELFSLMKREGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPKH 300

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+L+EALNFINTMPLKPHAGAWGALLNACRMYKNMELG+FASRKL+E
Sbjct: 301 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 360

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           +E KNH AYVLLSNIYADT N
Sbjct: 361 VEGKNHGAYVLLSNIYADTGN 381

BLAST of Lsi04G004620 vs. NCBI nr
Match: XP_008446300.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66
Identity = 121/141 (85.82%), Postives = 131/141 (92.91%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYGQKCL+L SLMKREGI PNE+TFI VL+GCSVVGF DEGRSHFDSMKRDHGI+P+ 
Sbjct: 320 MNGYGQKCLELFSLMKREGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPKH 379

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+L+EALNFINTMPLKPHAGAWGALLNACRMYKNMELG+FASRKL+E
Sbjct: 380 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 439

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           +E KNH AYVLLSNIYADT N
Sbjct: 440 VEGKNHGAYVLLSNIYADTGN 460

BLAST of Lsi04G004620 vs. NCBI nr
Match: XP_022968643.1 (putative pentatricopeptide repeat-containing protein At5g40405 [Cucurbita maxima])

HSP 1 Score: 260.8 bits (665), Expect = 7.0e-66
Identity = 121/141 (85.82%), Postives = 130/141 (92.20%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYG+KCL+L SLMKREGI PNE+TFI V+RGCSVVG  DEGR HFDSMKRD+ I+PQL
Sbjct: 321 MNGYGEKCLELFSLMKREGIAPNEITFISVIRGCSVVGLVDEGRLHFDSMKRDYDIEPQL 380

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+LDEALNFINTMP+KPHAGAWGALLNACRMYKNMELG+ ASRKLVE
Sbjct: 381 EHYGCMVDLYGRAGRLDEALNFINTMPIKPHAGAWGALLNACRMYKNMELGEVASRKLVE 440

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LEAKNH AYVLLSNIYADTKN
Sbjct: 441 LEAKNHGAYVLLSNIYADTKN 461

BLAST of Lsi04G004620 vs. NCBI nr
Match: XP_004135465.1 (putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 119/141 (84.40%), Postives = 129/141 (91.49%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNGYGQKCL+L S MK EGI PNE+TFI VL+GCSVVGF DEGRSHFDSMKRDHGI+P+L
Sbjct: 320 MNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRL 379

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDLY R G+L+EALNFINTMPLKPHAGAWGALLNACRMYKNMELG+FASRKL+E
Sbjct: 380 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 439

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           +E KNH AYV LSNIYADT N
Sbjct: 440 VEGKNHGAYVSLSNIYADTGN 460

BLAST of Lsi04G004620 vs. TAIR 10
Match: AT5G40405.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 211.8 bits (538), Expect = 3.5e-55
Identity = 92/141 (65.25%), Postives = 119/141 (84.40%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           MNG+G+KCL+L SLMK++G+ PN VTF+ VLRGCSVVGF DEG+ HFDSM+ + GI+PQL
Sbjct: 318 MNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQL 377

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGC+VDLY+R G+L++A++ I  MP+KPHA  W +LL+A RMYKN+ELG  AS+K++E
Sbjct: 378 EHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLE 437

Query: 121 LEAKNHSAYVLLSNIYADTKN 142
           LE  NH AYVLLSNIYAD+ +
Sbjct: 438 LETANHGAYVLLSNIYADSND 458

BLAST of Lsi04G004620 vs. TAIR 10
Match: AT4G33990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 149.1 bits (375), Expect = 2.7e-36
Identity = 68/136 (50.00%), Postives = 96/136 (70.59%), Query Frame = 0

Query: 2   NGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQLE 61
           +G+G+K + L   M  EG+ P+ +TF+ +L  CS  G  DEG+  F+ M+ D+GI P L+
Sbjct: 530 HGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLK 589

Query: 62  HYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVEL 121
           HYGCMVD+Y R GQL+ AL FI +M L+P A  WGALL+ACR++ N++LGK AS  L E+
Sbjct: 590 HYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEV 649

Query: 122 EAKNHSAYVLLSNIYA 138
           E ++   +VLLSN+YA
Sbjct: 650 EPEHVGYHVLLSNMYA 665

BLAST of Lsi04G004620 vs. TAIR 10
Match: AT1G06140.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-35
Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           +NG  ++ L     MK + +VPN VTF+ +L  CS  G   EG   F+SM RD+G+ P+ 
Sbjct: 390 INGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEE 449

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHY CMVDL  R G++ EA +FI+ MP+KP A AWGALL+ACR++K ++L    + KL+ 
Sbjct: 450 EHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLS 509

Query: 121 LEAKNHSAYVLLSNIYAD 139
           +E +  S YVLLSNIYAD
Sbjct: 510 MEPEKSSVYVLLSNIYAD 527

BLAST of Lsi04G004620 vs. TAIR 10
Match: AT3G49170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 144.8 bits (364), Expect = 5.2e-35
Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 0

Query: 2   NGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQLE 61
           +G+  + L+  + M  EG+ PNEVT++ +L  CS VG   EG  HF+SM  DH I+P++E
Sbjct: 553 HGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKME 612

Query: 62  HYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVEL 121
           HY CMVDL  R G L +A  FINTMP +     W   L ACR++ N ELGK A+RK++EL
Sbjct: 613 HYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEL 672

Query: 122 EAKNHSAYVLLSNIYA 138
           +    +AY+ LSNIYA
Sbjct: 673 DPNEPAAYIQLSNIYA 688

BLAST of Lsi04G004620 vs. TAIR 10
Match: AT4G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-34
Identity = 67/137 (48.91%), Postives = 94/137 (68.61%), Query Frame = 0

Query: 1   MNGYGQKCLKLVSLMKREGIVPNEVTFIYVLRGCSVVGFFDEGRSHFDSMKRDHGIQPQL 60
           M+G     L L + MK+E + PNEVTF+ VL GCS  G  +EG+  F SM  ++ I P+L
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481

Query: 61  EHYGCMVDLYSRVGQLDEALNFINTMPLKPHAGAWGALLNACRMYKNMELGKFASRKLVE 120
           EHYGCMVDL+ R   L EAL  I +MP+  +   WG+L++ACR++  +ELGKFA+++++E
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILE 541

Query: 121 LEAKNHSAYVLLSNIYA 138
           LE  +  A VL+SNIYA
Sbjct: 542 LEPDHDGALVLMSNIYA 558

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FND74.9e-5465.25Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis th... [more]
O817673.9e-3550.00Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX... [more]
Q9LND42.5e-3449.28Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop... [more]
Q5G1T17.3e-3448.53Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidop... [more]
O233372.1e-3348.91Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A5A7SZ476.8e-6785.82Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
A0A1S3BFJ26.8e-6785.82putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucumis melo O... [more]
A0A6J1HYM93.4e-6685.82putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucurbita maxi... [more]
A0A0A0KSJ75.7e-6684.40DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G6041... [more]
A0A6J1DA541.3e-6584.40putative pentatricopeptide repeat-containing protein At5g40405 OS=Momordica char... [more]
Match NameE-valueIdentityDescription
XP_038891785.18.8e-6990.07putative pentatricopeptide repeat-containing protein At5g40405 [Benincasa hispid... [more]
KAA0034379.11.4e-6685.82putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ... [more]
XP_008446300.11.4e-6685.82PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucum... [more]
XP_022968643.17.0e-6685.82putative pentatricopeptide repeat-containing protein At5g40405 [Cucurbita maxima... [more]
XP_004135465.11.2e-6584.40putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT5G40405.13.5e-5565.25Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G33990.12.7e-3650.00Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G06140.11.8e-3549.28Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G49170.15.2e-3548.53Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G14820.11.5e-3448.91Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 25..53
e-value: 0.082
score: 13.2
coord: 62..86
e-value: 0.0028
score: 17.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..141
e-value: 4.2E-28
score: 100.6
NoneNo IPR availablePANTHERPTHR47928:SF82OS01G0715700 PROTEINcoord: 1..141
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 1..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G004620.1Lsi04G004620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding