Lsi04G004610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G004610
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPentatricopeptide repeat (PPR) superfamily protein
Locationchr04: 4392187 .. 4392677 (-)
RNA-Seq ExpressionLsi04G004610
SyntenyLsi04G004610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAATGTTTTGGTAAAAAAATTATATATTTCACGAATATATTATAATTAATCTCCTAAATATATAAAAAAAAGATTAAGTAAACTGGTTGCAATGTTTTGGAGGTCAATGGAGAAGTTCACGAATTCTTTGTAGGAGACAAGTCTCACCCGCGTTATGACGCCATCGAAACGATATGGGGAGAGATTTCTAAACGGCTAAAGTTAGTAGGATACGTCGCAAATACTAACCCTGTTCTCTTTGATATAGAAGAAGAAAAGGAAGATGCTTTGTGTAAACATAGCGAGAAGATGGCCATTGCATTTGGATTGATTAGTCTGAAGGAGGGGTTGCCCATTAGAATAGTGAAGAACCTCAGAGTTTGTTGGGATTGCCATGATGTTACAAAGATGATATCTAAAATTTTTAACAGGGAGATTATTGTGAGAGATAGGAACAGATTTCACCATTTTAAAGATGGCGAGTGTTCTTGTAAGGATTTTTGGTGA

mRNA sequence

ATGTGCAATGTCAATGGAGAAGTTCACGAATTCTTTGTAGGAGACAAGTCTCACCCGCGTTATGACGCCATCGAAACGATATGGGGAGAGATTTCTAAACGGCTAAAGTTAGTAGGATACGTCGCAAATACTAACCCTGTTCTCTTTGATATAGAAGAAGAAAAGGAAGATGCTTTGTGTAAACATAGCGAGAAGATGGCCATTGCATTTGGATTGATTAGTCTGAAGGAGGGGTTGCCCATTAGAATAGTGAAGAACCTCAGAGTTTGTTGGGATTGCCATGATGTTACAAAGATGATATCTAAAATTTTTAACAGGGAGATTATTGTGAGAGATAGGAACAGATTTCACCATTTTAAAGATGGCGAGTGTTCTTGTAAGGATTTTTGGTGA

Coding sequence (CDS)

ATGTGCAATGTCAATGGAGAAGTTCACGAATTCTTTGTAGGAGACAAGTCTCACCCGCGTTATGACGCCATCGAAACGATATGGGGAGAGATTTCTAAACGGCTAAAGTTAGTAGGATACGTCGCAAATACTAACCCTGTTCTCTTTGATATAGAAGAAGAAAAGGAAGATGCTTTGTGTAAACATAGCGAGAAGATGGCCATTGCATTTGGATTGATTAGTCTGAAGGAGGGGTTGCCCATTAGAATAGTGAAGAACCTCAGAGTTTGTTGGGATTGCCATGATGTTACAAAGATGATATCTAAAATTTTTAACAGGGAGATTATTGTGAGAGATAGGAACAGATTTCACCATTTTAAAGATGGCGAGTGTTCTTGTAAGGATTTTTGGTGA

Protein sequence

MCNVNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEEEKEDALCKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDGECSCKDFW
Homology
BLAST of Lsi04G004610 vs. ExPASy Swiss-Prot
Match: Q9FND7 (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.2e-56
Identity = 99/128 (77.34%), Postives = 111/128 (86.72%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP+Y  I+ +W +IS+RL+L GY A+T PV+FDI EEEKEDALC H
Sbjct: 485 VNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLH 544

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK AIAFG++SLKE +PIRIVKNLRVC DCH V+ MISKIFNREIIVRDRNRFHHFKDG
Sbjct: 545 SEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 604

Query: 124 ECSCKDFW 131
            CSC  FW
Sbjct: 605 HCSCNGFW 612

BLAST of Lsi04G004610 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.3e-40
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEE-EKEDALCKH 63
           +  +VHEF  GD+ H +   I T+  +IS+R+K  GYV NTN VL D+EE EKE +L  H
Sbjct: 505 IENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVH 564

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SE++AIA+GLIS K G P++I KNLRVC DCH VTK+ISKI  R+I++RDRNRFHHF DG
Sbjct: 565 SERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDG 624

Query: 124 ECSCKDFW 131
            CSC DFW
Sbjct: 625 SCSCGDFW 632

BLAST of Lsi04G004610 vs. ExPASy Swiss-Prot
Match: Q683I9 (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.1e-39
Identity = 75/128 (58.59%), Postives = 95/128 (74.22%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           V G VHEF VGD+S    + I  +  EI +RL+  GYV +T  VL D+ E++KE AL  H
Sbjct: 446 VEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYH 505

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK+AIAF L+  + G P+RI+KNLR+C DCH V KMISK+F+REI+VRD NRFHHF+DG
Sbjct: 506 SEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDG 565

Query: 124 ECSCKDFW 131
            CSC+DFW
Sbjct: 566 SCSCRDFW 573

BLAST of Lsi04G004610 vs. ExPASy Swiss-Prot
Match: Q9LTV8 (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 5.3e-39
Identity = 75/128 (58.59%), Postives = 93/128 (72.66%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           V G +  F VGDKSHPRY+ IE     I  RLK  G+VAN +  L D+ +EE E+ LC H
Sbjct: 567 VRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSH 626

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SE++AIA+GLIS  +G P+RI KNLR C +CH  TK+ISK+ +REI+VRD NRFHHFKDG
Sbjct: 627 SERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDG 686

Query: 124 ECSCKDFW 131
            CSC D+W
Sbjct: 687 VCSCGDYW 694

BLAST of Lsi04G004610 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 6.9e-39
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 0

Query: 1   MCNVNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDAL 60
           +  V   VHEF +GDKSHP+ DAI     E++ RL+  GYV   + V  D+ EEEKE+A+
Sbjct: 465 LVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAV 524

Query: 61  CKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHF 120
             HSEK+AIAF LIS  E  PI +VKNLRVC DCH   K++SK++NREI+VRDR+RFHHF
Sbjct: 525 VYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHF 584

Query: 121 KDGECSCKDFW 131
           K+G CSC+D+W
Sbjct: 585 KNGSCSCQDYW 595

BLAST of Lsi04G004610 vs. ExPASy TrEMBL
Match: A0A6J1DA54 (putative pentatricopeptide repeat-containing protein At5g40405 OS=Momordica charantia OX=3673 GN=LOC111019070 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.7e-67
Identity = 122/128 (95.31%), Postives = 125/128 (97.66%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP YDAIET+WG+ISKRLKL GYVANTNPVLFDI EEEKEDALCKH
Sbjct: 488 VNGEVHEFFVGDKSHPNYDAIETMWGDISKRLKLAGYVANTNPVLFDIEEEEKEDALCKH 547

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHF+DG
Sbjct: 548 SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFRDG 607

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 608 ECSCKDFW 615

BLAST of Lsi04G004610 vs. ExPASy TrEMBL
Match: A0A5A7SZ47 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00320 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.5e-65
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP YDAIET+WGEISKRLKL GYVA+TN VLFDI EEEKEDALCKH
Sbjct: 408 VNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKH 467

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIF REIIVRDRNRFHHFKDG
Sbjct: 468 SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFEREIIVRDRNRFHHFKDG 527

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 528 ECSCKDFW 535

BLAST of Lsi04G004610 vs. ExPASy TrEMBL
Match: A0A1S3BFJ2 (putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucumis melo OX=3656 GN=LOC103489076 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.5e-65
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP YDAIET+WGEISKRLKL GYVA+TN VLFDI EEEKEDALCKH
Sbjct: 487 VNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKH 546

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIF REIIVRDRNRFHHFKDG
Sbjct: 547 SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFEREIIVRDRNRFHHFKDG 606

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 607 ECSCKDFW 614

BLAST of Lsi04G004610 vs. ExPASy TrEMBL
Match: A0A6J1FZH3 (putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucurbita moschata OX=3662 GN=LOC111449343 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 113/128 (88.28%), Postives = 123/128 (96.09%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP Y AIE +WGEISKRLKL GYVANTNPV+FD+ EEEKEDALCKH
Sbjct: 488 VNGEVHEFFVGDKSHPSYKAIERMWGEISKRLKLAGYVANTNPVMFDVEEEEKEDALCKH 547

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGL+S++EGLPIR+VKNLRVCWDCHDVTKMISK+FNREII+RDRNRFHHF+DG
Sbjct: 548 SEKMAIAFGLMSVEEGLPIRVVKNLRVCWDCHDVTKMISKLFNREIIMRDRNRFHHFRDG 607

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 608 ECSCKDFW 615

BLAST of Lsi04G004610 vs. ExPASy TrEMBL
Match: A0A0A0KSJ7 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604190 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFF GDKSHP YD IET+WGEISKRLKL GYVA+TN VLFDI EEEKEDALCKH
Sbjct: 408 VNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKH 467

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGL SLKEGLPIRIVKNLR+CWDCHDV+KMISKIF REIIVRDRNRFHHFKDG
Sbjct: 468 SEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDG 527

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 528 ECSCKDFW 535

BLAST of Lsi04G004610 vs. NCBI nr
Match: XP_022151045.1 (putative pentatricopeptide repeat-containing protein At5g40405 [Momordica charantia])

HSP 1 Score: 263.8 bits (673), Expect = 7.6e-67
Identity = 122/128 (95.31%), Postives = 125/128 (97.66%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP YDAIET+WG+ISKRLKL GYVANTNPVLFDI EEEKEDALCKH
Sbjct: 488 VNGEVHEFFVGDKSHPNYDAIETMWGDISKRLKLAGYVANTNPVLFDIEEEEKEDALCKH 547

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHF+DG
Sbjct: 548 SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFRDG 607

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 608 ECSCKDFW 615

BLAST of Lsi04G004610 vs. NCBI nr
Match: KAA0034379.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK15540.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP YDAIET+WGEISKRLKL GYVA+TN VLFDI EEEKEDALCKH
Sbjct: 408 VNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKH 467

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIF REIIVRDRNRFHHFKDG
Sbjct: 468 SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFEREIIVRDRNRFHHFKDG 527

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 528 ECSCKDFW 535

BLAST of Lsi04G004610 vs. NCBI nr
Match: XP_008446300.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 121/128 (94.53%), Postives = 123/128 (96.09%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP YDAIET+WGEISKRLKL GYVA+TN VLFDI EEEKEDALCKH
Sbjct: 487 VNGEVHEFFVGDKSHPSYDAIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKH 546

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIF REIIVRDRNRFHHFKDG
Sbjct: 547 SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFEREIIVRDRNRFHHFKDG 606

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 607 ECSCKDFW 614

BLAST of Lsi04G004610 vs. NCBI nr
Match: XP_038891785.1 (putative pentatricopeptide repeat-containing protein At5g40405 [Benincasa hispida])

HSP 1 Score: 256.9 bits (655), Expect = 9.3e-65
Identity = 119/128 (92.97%), Postives = 124/128 (96.88%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP Y AIET+WGEIS++LKL GYVANTNPVLFDI EEEKEDALCKH
Sbjct: 488 VNGEVHEFFVGDKSHPSYHAIETMWGEISQQLKLAGYVANTNPVLFDIEEEEKEDALCKH 547

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIF+REIIVRDRNRFHHFKDG
Sbjct: 548 SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFDREIIVRDRNRFHHFKDG 607

Query: 124 ECSCKDFW 131
           +CSCKDFW
Sbjct: 608 DCSCKDFW 615

BLAST of Lsi04G004610 vs. NCBI nr
Match: XP_022944963.1 (putative pentatricopeptide repeat-containing protein At5g40405 [Cucurbita moschata])

HSP 1 Score: 252.3 bits (643), Expect = 2.3e-63
Identity = 113/128 (88.28%), Postives = 123/128 (96.09%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP Y AIE +WGEISKRLKL GYVANTNPV+FD+ EEEKEDALCKH
Sbjct: 488 VNGEVHEFFVGDKSHPSYKAIERMWGEISKRLKLAGYVANTNPVMFDVEEEEKEDALCKH 547

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEKMAIAFGL+S++EGLPIR+VKNLRVCWDCHDVTKMISK+FNREII+RDRNRFHHF+DG
Sbjct: 548 SEKMAIAFGLMSVEEGLPIRVVKNLRVCWDCHDVTKMISKLFNREIIMRDRNRFHHFRDG 607

Query: 124 ECSCKDFW 131
           ECSCKDFW
Sbjct: 608 ECSCKDFW 615

BLAST of Lsi04G004610 vs. TAIR 10
Match: AT5G40405.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 217.6 bits (553), Expect = 5.8e-57
Identity = 99/128 (77.34%), Postives = 111/128 (86.72%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           VNGEVHEFFVGDKSHP+Y  I+ +W +IS+RL+L GY A+T PV+FDI EEEKEDALC H
Sbjct: 485 VNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLH 544

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK AIAFG++SLKE +PIRIVKNLRVC DCH V+ MISKIFNREIIVRDRNRFHHFKDG
Sbjct: 545 SEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 604

Query: 124 ECSCKDFW 131
            CSC  FW
Sbjct: 605 HCSCNGFW 612

BLAST of Lsi04G004610 vs. TAIR 10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 164.9 bits (416), Expect = 4.5e-41
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDIEE-EKEDALCKH 63
           +  +VHEF  GD+ H +   I T+  +IS+R+K  GYV NTN VL D+EE EKE +L  H
Sbjct: 505 IENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVH 564

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SE++AIA+GLIS K G P++I KNLRVC DCH VTK+ISKI  R+I++RDRNRFHHF DG
Sbjct: 565 SERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDG 624

Query: 124 ECSCKDFW 131
            CSC DFW
Sbjct: 625 SCSCGDFW 632

BLAST of Lsi04G004610 vs. TAIR 10
Match: AT3G62890.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 162.2 bits (409), Expect = 2.9e-40
Identity = 75/128 (58.59%), Postives = 95/128 (74.22%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           V G VHEF VGD+S    + I  +  EI +RL+  GYV +T  VL D+ E++KE AL  H
Sbjct: 446 VEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYH 505

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SEK+AIAF L+  + G P+RI+KNLR+C DCH V KMISK+F+REI+VRD NRFHHF+DG
Sbjct: 506 SEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDG 565

Query: 124 ECSCKDFW 131
            CSC+DFW
Sbjct: 566 SCSCRDFW 573

BLAST of Lsi04G004610 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 )

HSP 1 Score: 161.8 bits (408), Expect = 3.8e-40
Identity = 75/128 (58.59%), Postives = 93/128 (72.66%), Query Frame = 0

Query: 4   VNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDALCKH 63
           V G +  F VGDKSHPRY+ IE     I  RLK  G+VAN +  L D+ +EE E+ LC H
Sbjct: 567 VRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSH 626

Query: 64  SEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHFKDG 123
           SE++AIA+GLIS  +G P+RI KNLR C +CH  TK+ISK+ +REI+VRD NRFHHFKDG
Sbjct: 627 SERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDG 686

Query: 124 ECSCKDFW 131
            CSC D+W
Sbjct: 687 VCSCGDYW 694

BLAST of Lsi04G004610 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 4.9e-40
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 0

Query: 1   MCNVNGEVHEFFVGDKSHPRYDAIETIWGEISKRLKLVGYVANTNPVLFDI-EEEKEDAL 60
           +  V   VHEF +GDKSHP+ DAI     E++ RL+  GYV   + V  D+ EEEKE+A+
Sbjct: 465 LVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAV 524

Query: 61  CKHSEKMAIAFGLISLKEGLPIRIVKNLRVCWDCHDVTKMISKIFNREIIVRDRNRFHHF 120
             HSEK+AIAF LIS  E  PI +VKNLRVC DCH   K++SK++NREI+VRDR+RFHHF
Sbjct: 525 VYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHF 584

Query: 121 KDGECSCKDFW 131
           K+G CSC+D+W
Sbjct: 585 KNGSCSCQDYW 595

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FND78.2e-5677.34Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis th... [more]
Q9SZT86.3e-4060.16Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t... [more]
Q683I94.1e-3958.59Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana OX... [more]
Q9LTV85.3e-3958.59Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX... [more]
A8MQA36.9e-3957.25Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A6J1DA543.7e-6795.31putative pentatricopeptide repeat-containing protein At5g40405 OS=Momordica char... [more]
A0A5A7SZ471.5e-6594.53Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
A0A1S3BFJ21.5e-6594.53putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucumis melo O... [more]
A0A6J1FZH31.1e-6388.28putative pentatricopeptide repeat-containing protein At5g40405 OS=Cucurbita mosc... [more]
A0A0A0KSJ72.5e-6390.63DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G6041... [more]
Match NameE-valueIdentityDescription
XP_022151045.17.6e-6795.31putative pentatricopeptide repeat-containing protein At5g40405 [Momordica charan... [more]
KAA0034379.13.2e-6594.53putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ... [more]
XP_008446300.13.2e-6594.53PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Cucum... [more]
XP_038891785.19.3e-6592.97putative pentatricopeptide repeat-containing protein At5g40405 [Benincasa hispid... [more]
XP_022944963.12.3e-6388.28putative pentatricopeptide repeat-containing protein At5g40405 [Cucurbita moscha... [more]
Match NameE-valueIdentityDescription
AT5G40405.15.8e-5777.34Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G37380.14.5e-4160.16Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G62890.12.9e-4058.59Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G12770.13.8e-4058.59mitochondrial editing factor 22 [more]
AT4G21065.14.9e-4057.25Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032867DYW domainPFAMPF14432DYW_deaminasecoord: 4..120
e-value: 7.8E-40
score: 135.7
NoneNo IPR availablePANTHERPTHR47926PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 3..117
NoneNo IPR availablePANTHERPTHR47926:SF90SUBFAMILY NOT NAMEDcoord: 3..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G004610.1Lsi04G004610.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding