Lsi04G004530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G004530
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 4315503 .. 4316134 (+)
RNA-Seq ExpressionLsi04G004530
SyntenyLsi04G004530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGGTACATTCCTCAATCTATATTTTGAAAGTAGCAGTAAGACACATAACATGGAATTATCTAGGGTCACTGGAAGGAACGGAGCCCAACGGTAGGATTTCAATATTGACTGAACCTGAAACATCAAAATCTTAGTGTTTAGTTCTTTCGAAACTGTTGCACATAACCTATTCTATTTTTGGGTAGGACTCTTATCATTTTTGTCTTGTGAACAATGACTATATGAGTACATGATACCAAGAAAATGACTACATATGATACGAAGTAGTAGTTTTGTTAATTTGAGCAATAAAGTTACCCTACTGGCATAGTTTAAGAGCCTACTGTTGTTGATTTGAATGGTTCTTCTTGCAGTAAGACTTTGTAAAAATCTTCTCCTAAATTATCAGCAGCTGTGGGAGCATCTTTACCGATTCCTTTGTCGATCGCAACTCCACCAGCCACAGCAGCTCCAACCGCCGCTGCAGCTATCCCTGCAACTGCAACCGGGCCTGTTGCCCCTAATGCCAATGCTCCAATAGCCCCAACTGCTCCTGCACCAACTCCAACTGCAGTAGCTGAACCAGCAGATAAAGCAGCTGCAGCAAGTTCTGCACTCTCCAACACCCACAAGATAATTGCCGAATAA

mRNA sequence

ATGACAGCAGCTGTGGGAGCATCTTTACCGATTCCTTTGTCGATCGCAACTCCACCAGCCACAGCAGCTCCAACCGCCGCTGCAGCTATCCCTGCAACTGCAACCGGGCCTGTTGCCCCTAATGCCAATGCTCCAATAGCCCCAACTGCTCCTGCACCAACTCCAACTGCAGTAGCTGAACCAGCAGATAAAGCAGCTGCAGCAAGTTCTGCACTCTCCAACACCCACAAGATAATTGCCGAATAA

Coding sequence (CDS)

ATGACAGCAGCTGTGGGAGCATCTTTACCGATTCCTTTGTCGATCGCAACTCCACCAGCCACAGCAGCTCCAACCGCCGCTGCAGCTATCCCTGCAACTGCAACCGGGCCTGTTGCCCCTAATGCCAATGCTCCAATAGCCCCAACTGCTCCTGCACCAACTCCAACTGCAGTAGCTGAACCAGCAGATAAAGCAGCTGCAGCAAGTTCTGCACTCTCCAACACCCACAAGATAATTGCCGAATAA

Protein sequence

MTAAVGASLPIPLSIATPPATAAPTAAAAIPATATGPVAPNANAPIAPTAPAPTPTAVAEPADKAAAASSALSNTHKIIAE
Homology
[Close]
BLAST of Lsi04G004530 vs. ExPASy TrEMBL
Match: A0A022Q3C3 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016488mg PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.5e-14
Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 3   AAVGASLPIPLSIATPPATAAPTAAAAIPATATGPVAPNANAPIAPTAPAPTPTAVAEPA 62
           A VGAS PIPLSI TPPATAAPTAAAA PATA+GPVAP+A+AP AP AP  TP A A+ A
Sbjct: 41  ATVGASFPIPLSITTPPATAAPTAAAASPATASGPVAPSASAPSAPAAPVVTPAAAADVA 100

Query: 63  DKAAAASSALSNTHKIIAE 82
           DKAAAA SA  +T  IIAE
Sbjct: 101 DKAAAAISAFCSTQSIIAE 119

[Close]
BLAST of Lsi04G004530 vs. ExPASy TrEMBL
Match: A0A2I0HYT9 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_042810 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 7  ASLPIPLSIATPPATAAPTAAAAIPATATGPVAPNANAPIAPTAPAPTPTAVAEPADKAA 66
          ++L I LS AT    AAPTAAA  PATA GPV P+A+AP APT PAP P AVAE AD+A 
Sbjct: 26 STLSIELSSAT-GTNAAPTAAAVNPATAAGPVTPSASAPRAPTVPAPKPAAVAELADRAR 85

Query: 67 AASSALSNTHKIIAE 82
          AA+SALS+T ++ AE
Sbjct: 86 AATSALSSTQRMTAE 99

[Close]
BLAST of Lsi04G004530 vs. NCBI nr
Match: EYU22436.1 (hypothetical protein MIMGU_mgv1a016488mg [Erythranthe guttata])

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-13
Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = 0 

Query: 3   AAVGASLPIPLSIATPPATAAPTAAAAIPATATGPVAPNANAPIAPTAPAPTPTAVAEPA 62
           A VGAS PIPLSI TPPATAAPTAAAA PATA+GPVAP+A+AP AP AP  TP A A+ A
Sbjct: 41  ATVGASFPIPLSITTPPATAAPTAAAASPATASGPVAPSASAPSAPAAPVVTPAAAADVA 100

Query: 63  DKAAAASSALSNTHKIIAE 82
           DKAAAA SA  +T  IIAE
Sbjct: 101 DKAAAAISAFCSTQSIIAE 119

[Close]
BLAST of Lsi04G004530 vs. NCBI nr
Match: PKI36861.1 (hypothetical protein CRG98_042810 [Punica granatum])

HSP 1 Score: 60.5 bits (145), Expect = 7.9e-06
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 0 

Query: 7  ASLPIPLSIATPPATAAPTAAAAIPATATGPVAPNANAPIAPTAPAPTPTAVAEPADKAA 66
          ++L I LS AT    AAPTAAA  PATA GPV P+A+AP APT PAP P AVAE AD+A 
Sbjct: 26 STLSIELSSAT-GTNAAPTAAAVNPATAAGPVTPSASAPRAPTVPAPKPAAVAELADRAR 85

Query: 67 AASSALSNTHKIIAE 82
          AA+SALS+T ++ AE
Sbjct: 86 AATSALSSTQRMTAE 99

The following BLAST results are available for this feature:
BLAST of Lsi04G004530 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G004530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A022Q3C38.5e-1473.42Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016488mg PE... [more]
A0A2I0HYT93.8e-0662.67Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_042810 PE=4 SV=1[more]
BLAST of Lsi04G004530 vs. NCBI nr
Match NameE-valueIdentityDescription
EYU22436.11.8e-1373.42hypothetical protein MIMGU_mgv1a016488mg [Erythranthe guttata][more]
PKI36861.17.9e-0662.67hypothetical protein CRG98_042810 [Punica granatum][more]
BLAST of Lsi04G004530 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G004530.1Lsi04G004530.1mRNA