Lsi04G004410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G004410
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	binding partner of ACD11 1
Location	chr04: 4227822 .. 4230900 (+)
RNA-Seq Expression	Lsi04G004410
Synteny	Lsi04G004410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTGGTGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTCGTTGAGATTGTTAGGTATTCATTTTGTTCCGTATCAAGCATTTAATTCCATGTCCTCGAGTCCGTAATTTCACCATCTTTTCGTCCTTTTTCGGTGAACAAGTTGTTTATTTGAAAGATCAATCGATCTTTCTAAGTGTGATTAGGTTTGAGTAGTTTGAAGAAGCTGTTTTGCATTGCACGCCTTAAGTTTATGGCCTTTTTGTTAGACTTTATATTTTAGTTTGTTTTTCCTTTTTTCGAAAGCGCTTGGTGTAAGGATTTCTGGTTTCATGAAAACAGATCTGGTGAAGATGCCTGCACTGCCTATGTGACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGTGAGTATTTCAATTCCAAATAAGCTTCAGGCCTACAATACAGTATTTGATTCAATTCTTCCATTACTCTTTATTTGGAGCTACAGGGTGTGCCAGCGAGCGCACTCTGATACTACATAGACATGTGATCTTTATATATATATATATATTTGATTTGATTTATGTTATTAATTTCTCTGATTTTTCATTTTTTTTTTGTATATGAAGTGAACACGAGAATCTTACGGATGCTCCAATTTAAAAAATATACCTTTCAAATTATTAATTTTTCTGAAGAATATAATTATATGGATTTAATGCATTGCATCGATACCGCATTCTTGGGTTGTGAGCCACATATTTAATTTATAATGCCAAGTTAAATCGCTCTTTTAAAAATTAACTTCTGTTGATGTGGCTCATTTGGCAATTTTGATTGTAGAAAGAATGAAACAGTGGGTTTTTTTTTTTTTTTTTTTCCCCGATTTAAAATGCTATTCAATTTTCTCTGGCTTTTTTTGGAGGAAGGAACTCTTCATCTGCTTTTGGTGAAGGATCTCTCTGTCTTTCCTCAATGAAGCAACCAATTGCCTTTGTAGAGGATTGAGTTCCTCTTTTACTGGATTTCTCCTATTAATAGTGAAGGATGCTTTCGTTTCATCCAGTAAGGCCCATTGTTAGAGAAGAAAACCCGAGTGTGGTTAGACCTTTGCTAAATAATAACAACAAAAAACAACAGTAACTATCAAAATCGAAATAATGGAAGGGAGAGAGAAAAAAAATTGGCTTTCAAATAATGAAAATTGCTTCATGAGCATTGAACCATAAAAGTATGGTTTTGGCATCATCAAATCTGGAGAAGAAGCCATAATAGGAATATACCATTGGAATGTTCTAAGAAGCACGAACGTGGATATAACTACGCATTCTGTTGAAACGTTTATCATTGTATAGACATTGCAGTTAAATGTTTTAGGCATATGACAAATCTGAATCTTCTTATACAAAAAATAATTAAAAAATAATAATAATAAAAGAAGATAATCTGAACCATAGACATATGGTATGGCAGATCTGAATCTGTGATTGAGAAACAATAGCATTGTTGTTTTTGTTACTGCTGCTGCTGAGTCTACGATTATAGGCAATAACGTTGTTGTTGAATTTGTGATAATTAGAGAGACAAACACATTGTTGCCGTTGTTGTTGAGTACACTGTGATTACAGATAAATAACATTGTTTTTGTTCTTGAATCCATAGTTATTAATAGTTATTGTTGAATAATCTGCTAGATACATTCTTCTCTCCTTGTTCTCTTTTGCTGCAAATTTTCGTTGTTTTCGATATGAATTATTGAAGGATTTTCAACCACATCAGATGAATATCCTCTTGGATTCAAATGATAAAGGGATTTCAATACGGGTATAAATTTCAGTTTGTAAGCATCGACTGTTCTGATTTTATTATCCTGTTTATGCTTTGGTCTACTATTAGGTCTTCAATCAATGATCATTTCTGGTTATCTGCTTAATGATGGTGAAAATACCTTTATTCACCTGATCGCACTTCATCATGCCATTAGTTTCTCTCCAAGGAGATGGTGGTCGTTACTTTTCATCCTGTGTTTTCCACCTGATAATAATGATCATGCTTTTAGAGTTCAATATCTGATTCTTGCAGGGTGCAACAATTGTAGATCAAAGAGTATGTATAACACGGTGGGGACATTTTGAGGACGAATTTGGTTTTTGGAGTAGGCCTTCTGGTTACCATGAAGAAGACAGTACTCCTGCTGTAAGTGCCAAAAATGATATATATTAATATTTCCTAACTGTTGCAATTTGCAAATGTTTTCTTCCTATAGACAATCTTTGATTAATTGATGAGTTCTCCATCTTGTAGTCGGCACAAAGAAGTCAGTTTATTTCCAGTGCTGGTAACGCAGTGACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGTTGGGTAAAGATACATTAACCAAAGCCAAAGCCTTTGACGAATCTCATCAGGTTTCAGCAACGGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGCCTGACTGACATGATAGGTGCGGGTTTTGAAGCGGTTAAAACCGTGGATGAGAAGTACCATGTATTGCAGACCACCAAATCAGCTATATCAGCCACAGGAAGAACAGCCGCTGCCGCTGCAGATACCGTGGTCAGGAGTAGCTACTTCTCTAGGGGAGCTCTTTTCATGTCTGATGCCCTGAATCGAGCAGCCAAAGTTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAGTGAGAGAGAGTGCTTCTACTCATCCATTTGTAAATAAAGAAATTTAAATGCATACCTAAATTTGCAAGTATTACGATATTTTACCAGAGCGTACATTCATCTGAAAGCTGTATGTATAAGTTTAAACTTTACATTTCATAGAGTTCAATGACACGTACTAGTCATTTGACCCCACAAGTTTTGCTAAATTTTGAGCCCAAATTTGGTAAAATTCGATCAGAGATGGTCTTTATTGAGTCATTTTGTCAGTTTGTAAATTCAGTATCCTTGGAGTCAAATCTATTCTTTTAGCACTCTTGGAAACGTCTC

mRNA sequence

ATGGATCCTGGTGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTCGTTGAGATTGTTAGGTATTCATTTTGTTCCGATTTCTGGTTTCATGAAAACAGATCTGGTGAAGATGCCTGCACTGCCTATGTGACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGTGCAACAATTGTAGATCAAAGAGTATGTATAACACGGTGGGGACATTTTGAGGACGAATTTGGTTTTTGGAGTAGGCCTTCTGGTTACCATGAAGAAGACAGTACTCCTGCTTCGGCACAAAGAAGTCAGTTTATTTCCAGTGCTGGTAACGCAGTGACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGTTGGGTAAAGATACATTAACCAAAGCCAAAGCCTTTGACGAATCTCATCAGGTTTCAGCAACGGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGCCTGACTGACATGATAGGTGCGGGTTTTGAAGCGGTTAAAACCGTGGATGAGAAGTACCATGTATTGCAGACCACCAAATCAGCTATATCAGCCACAGGAAGAACAGCCGCTGCCGCTGCAGATACCGTGGTCAGGAGTAGCTACTTCTCTAGGGGAGCTCTTTTCATGTCTGATGCCCTGAATCGAGCAGCCAAAGTTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAGTGAGAGAGAGTGCTTCTACTCATCCATTTGTAAATAAAGAAATTTAAATGCATACCTAAATTTGCAAGTATTACGATATTTTACCAGAGCGTACATTCATCTGAAAGCTGTATGTATAAGTTTAAACTTTACATTTCATAGAGTTCAATGACACGTACTAGTCATTTGACCCCACAAGTTTTGCTAAATTTTGAGCCCAAATTTGGTAAAATTCGATCAGAGATGGTCTTTATTGAGTCATTTTGTCAGTTTGTAAATTCAGTATCCTTGGAGTCAAATCTATTCTTTTAGCACTCTTGGAAACGTCTC

Coding sequence (CDS)

ATGGATCCTGGTGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTCGTTGAGATTGTTAGGTATTCATTTTGTTCCGATTTCTGGTTTCATGAAAACAGATCTGGTGAAGATGCCTGCACTGCCTATGTGACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGTGCAACAATTGTAGATCAAAGAGTATGTATAACACGGTGGGGACATTTTGAGGACGAATTTGGTTTTTGGAGTAGGCCTTCTGGTTACCATGAAGAAGACAGTACTCCTGCTTCGGCACAAAGAAGTCAGTTTATTTCCAGTGCTGGTAACGCAGTGACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGTTGGGTAAAGATACATTAACCAAAGCCAAAGCCTTTGACGAATCTCATCAGGTTTCAGCAACGGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGCCTGACTGACATGATAGGTGCGGGTTTTGAAGCGGTTAAAACCGTGGATGAGAAGTACCATGTATTGCAGACCACCAAATCAGCTATATCAGCCACAGGAAGAACAGCCGCTGCCGCTGCAGATACCGTGGTCAGGAGTAGCTACTTCTCTAGGGGAGCTCTTTTCATGTCTGATGCCCTGAATCGAGCAGCCAAAGTTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAG

Protein sequence

MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH

Homology

[Close]

BLAST of Lsi04G004410 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.5e-32
Identity = 94/254 (37.01%), Postives = 139/254 (54.72%), Query Frame = 0


Query: 7   TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKD 66
           +V+V  LS  ATE D+ +FF+FSG +E ++I              +S E   +AYVTFK+
Sbjct: 7   SVKVGNLSSGATEHDIKEFFSFSGEVESIDI--------------QSNEH--SAYVTFKE 66

Query: 67  AYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRSQFISSA 126
               ETA LLSGA+I DQ V I    ++       S P+  H E  +          S A
Sbjct: 67  TQGAETAVLLSGASIADQSVIIELAPNY-------SPPAAPHAETQS----------SGA 126

Query: 127 GNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIG 186
            + V  A++VV +MLA G++LGKD + KAKAFDE H  ++TA A VA L  +IGL+  + 
Sbjct: 127 ESVVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLT 186

Query: 187 AGF----EAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNR 246
           AG     E +K VD+ + V + TKS  +A  +T ++A   V+++ Y   G  + + A NR
Sbjct: 187 AGTSLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNR 227

Query: 247 AAKVAADLGSRGLE 257
            A+ A ++G +  E
Sbjct: 247 VAQAAGEVGQKTKE 227

[Close]

BLAST of Lsi04G004410 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.5e-05
Identity = 51/202 (25.25%), Postives = 81/202 (40.10%), Query Frame = 0


Query: 8   VEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDA 67
           V VT +SP+ TEK + DFF+F G +  +                +SGE   TA + F+  
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNIS-------------TEKSGETQ-TAKIQFERP 64

Query: 68  YSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRSQFISSAG 127
            + +TA LL  A +   ++ IT                    ED   AS         AG
Sbjct: 65  SATKTALLLQDALLGQNKIQIT-------------------SEDGGAASTTDQ---GGAG 124

Query: 128 NAVTMAQE------VVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGL 187
                 QE      ++  +L+ GY L   TL K+   D+S+ VS+               
Sbjct: 125 GDQAARQEDKPRSAIISELLSRGYHLSDVTLEKSIQLDQSYGVSSK-------------F 157

Query: 188 TDMIGAGFEAVKTVDEKYHVLQ 204
             ++ +    V++V+E+YHV +
Sbjct: 185 KGILESALSGVRSVNERYHVTE 157

[Close]

BLAST of Lsi04G004410 vs. ExPASy TrEMBL
Match: A0A0A0KSM6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604930 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.7e-121
Identity = 232/257 (90.27%), Postives = 239/257 (93.00%), Query Frame = 0


Query: 1   MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTA 60
           M+PGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIV             RSGEDACTA
Sbjct: 1   MNPGGYTVEVTGLSPVATEKDVLDFFAFSGAIELVEIV-------------RSGEDACTA 60

Query: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRS 120
           YVTFKDAYSQETACLLSGA IVDQRVCITRWGHF+DEFGFWSRP G+ EEDSTPASAQRS
Sbjct: 61  YVTFKDAYSQETACLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTPASAQRS 120

Query: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180
           QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG
Sbjct: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180

Query: 181 LTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240
           LTDM+GAG+EAVK+VDEKYHVL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL
Sbjct: 181 LTDMLGAGYEAVKSVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240

Query: 241 NRAAKVAADLGSRGLEH 258
           NRAAK AADLGSRGLEH
Sbjct: 241 NRAAKAAADLGSRGLEH 244

[Close]

BLAST of Lsi04G004410 vs. ExPASy TrEMBL
Match: A0A5D3CVI0 (Binding partner of ACD11 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00120 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.1e-119
Identity = 230/257 (89.49%), Postives = 237/257 (92.22%), Query Frame = 0


Query: 1   MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTA 60
           M+PGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIV             RSG+DACTA
Sbjct: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIV-------------RSGDDACTA 60

Query: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRS 120
           YVTFKDAYSQETACLLSGA IVDQRVCITRWGHF+DEFGFWSRP G+ EEDST ASAQRS
Sbjct: 61  YVTFKDAYSQETACLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTSASAQRS 120

Query: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180
           QFISSAGNAVTMAQEVVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLSHRIG
Sbjct: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSHRIG 180

Query: 181 LTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240
           LTDM+GAGFEAVK+VDEKYHVL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL
Sbjct: 181 LTDMLGAGFEAVKSVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240

Query: 241 NRAAKVAADLGSRGLEH 258
           NRAAK AADLGSRGLEH
Sbjct: 241 NRAAKAAADLGSRGLEH 244

[Close]

BLAST of Lsi04G004410 vs. ExPASy TrEMBL
Match: A0A1S3BET5 (binding partner of ACD11 1 OS=Cucumis melo OX=3656 GN=LOC103489100 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.1e-119
Identity = 230/257 (89.49%), Postives = 237/257 (92.22%), Query Frame = 0


Query: 1   MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTA 60
           M+PGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIV             RSG+DACTA
Sbjct: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIV-------------RSGDDACTA 60

Query: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRS 120
           YVTFKDAYSQETACLLSGA IVDQRVCITRWGHF+DEFGFWSRP G+ EEDST ASAQRS
Sbjct: 61  YVTFKDAYSQETACLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTSASAQRS 120

Query: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180
           QFISSAGNAVTMAQEVVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLSHRIG
Sbjct: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSHRIG 180

Query: 181 LTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240
           LTDM+GAGFEAVK+VDEKYHVL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL
Sbjct: 181 LTDMLGAGFEAVKSVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240

Query: 241 NRAAKVAADLGSRGLEH 258
           NRAAK AADLGSRGLEH
Sbjct: 241 NRAAKAAADLGSRGLEH 244

[Close]

BLAST of Lsi04G004410 vs. ExPASy TrEMBL
Match: A0A6J1JE77 (binding partner of ACD11 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486072 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.4e-118
Identity = 229/257 (89.11%), Postives = 236/257 (91.83%), Query Frame = 0


Query: 1   MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTA 60
           M PGGYTVEVTGLSPKA EKDVLDFFAF G IELVEI+             RSGEDACTA
Sbjct: 1   MSPGGYTVEVTGLSPKAEEKDVLDFFAFCGPIELVEII-------------RSGEDACTA 60

Query: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRS 120
           YVTFKDAYSQETACLLSGATIVDQRVCITRWGHF+DEFGFWSRPSGYHEEDST ASAQRS
Sbjct: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFDDEFGFWSRPSGYHEEDST-ASAQRS 120

Query: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180
           QFISSAGNAVTMAQEVVKTML+MGYVLGKD LTKAK FDESHQVSATAAAKVADLSHRIG
Sbjct: 121 QFISSAGNAVTMAQEVVKTMLSMGYVLGKDALTKAKTFDESHQVSATAAAKVADLSHRIG 180

Query: 181 LTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240
           LTDMIGAGFEAVKT+DEKYHVLQTTKSAISATGRTAAAAADTVV+S YFSRGALF+SDAL
Sbjct: 181 LTDMIGAGFEAVKTMDEKYHVLQTTKSAISATGRTAAAAADTVVQSGYFSRGALFVSDAL 240

Query: 241 NRAAKVAADLGSRGLEH 258
           NRAAKVAADLGSRG+EH
Sbjct: 241 NRAAKVAADLGSRGVEH 243

[Close]

BLAST of Lsi04G004410 vs. ExPASy TrEMBL
Match: A0A6J1G2B1 (binding partner of ACD11 1-like OS=Cucurbita moschata OX=3662 GN=LOC111450009 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.4e-118
Identity = 225/257 (87.55%), Postives = 237/257 (92.22%), Query Frame = 0


Query: 1   MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTA 60
           M+PGGYTVEVTGLSPKATEKD+LDFFAFSGAIELVEIV             RSGEDACTA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIV-------------RSGEDACTA 60

Query: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRS 120
           YV+FKDAYSQETACLLSGATIVDQRVCITRWGHF++EF FWSRPSGYHEED TP SAQRS
Sbjct: 61  YVSFKDAYSQETACLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPPSAQRS 120

Query: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180
           QF+S+AG AV+MAQ+VVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLS+RIG
Sbjct: 121 QFVSTAGTAVSMAQDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIG 180

Query: 181 LTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240
           LTDMIGAG+EA KT+DEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL
Sbjct: 181 LTDMIGAGYEAAKTMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240

Query: 241 NRAAKVAADLGSRGLEH 258
           NRAAK AADLGSRGLEH
Sbjct: 241 NRAAKAAADLGSRGLEH 244

[Close]

BLAST of Lsi04G004410 vs. NCBI nr
Match: XP_004135186.1 (binding partner of ACD11 1 [Cucumis sativus] >KGN51899.1 hypothetical protein Csa_008734 [Cucumis sativus])

HSP 1 Score: 443.4 bits (1139), Expect = 1.4e-120
Identity = 232/257 (90.27%), Postives = 239/257 (93.00%), Query Frame = 0


Query: 1   MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTA 60
           M+PGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIV             RSGEDACTA
Sbjct: 1   MNPGGYTVEVTGLSPVATEKDVLDFFAFSGAIELVEIV-------------RSGEDACTA 60

Query: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRS 120
           YVTFKDAYSQETACLLSGA IVDQRVCITRWGHF+DEFGFWSRP G+ EEDSTPASAQRS
Sbjct: 61  YVTFKDAYSQETACLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTPASAQRS 120

Query: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180
           QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG
Sbjct: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180

Query: 181 LTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240
           LTDM+GAG+EAVK+VDEKYHVL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL
Sbjct: 181 LTDMLGAGYEAVKSVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240

Query: 241 NRAAKVAADLGSRGLEH 258
           NRAAK AADLGSRGLEH
Sbjct: 241 NRAAKAAADLGSRGLEH 244

[Close]

BLAST of Lsi04G004410 vs. NCBI nr
Match: XP_038892042.1 (binding partner of ACD11 1 [Benincasa hispida])

HSP 1 Score: 442.6 bits (1137), Expect = 2.4e-120
Identity = 230/257 (89.49%), Postives = 240/257 (93.39%), Query Frame = 0


Query: 1   MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTA 60
           M+PGGYTVEVTGLSPKATEKDVLDFFAFSGAI+LVEI+             RSG+DACTA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIDLVEII-------------RSGDDACTA 60

Query: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRS 120
           YVTFKDAYSQETACLLSGA I+DQRVCITRWG+F+DEFGFWSR SG+HEEDSTPASAQRS
Sbjct: 61  YVTFKDAYSQETACLLSGAKIIDQRVCITRWGYFDDEFGFWSRSSGHHEEDSTPASAQRS 120

Query: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180
           QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKA DESHQVS TAAAKVADLSHRIG
Sbjct: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKALDESHQVSTTAAAKVADLSHRIG 180

Query: 181 LTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240
           LTDMIGAGFEAVKT+DEKYHVLQTTKSAISATG+TAAAAADTVVRSSYFSRGALFMSDAL
Sbjct: 181 LTDMIGAGFEAVKTMDEKYHVLQTTKSAISATGKTAAAAADTVVRSSYFSRGALFMSDAL 240

Query: 241 NRAAKVAADLGSRGLEH 258
           NRAAKVAADLGSRGLEH
Sbjct: 241 NRAAKVAADLGSRGLEH 244

[Close]

BLAST of Lsi04G004410 vs. NCBI nr
Match: XP_008446330.1 (PREDICTED: binding partner of ACD11 1 [Cucumis melo] >KAA0034401.1 binding partner of ACD11 1 [Cucumis melo var. makuwa] >TYK15522.1 binding partner of ACD11 1 [Cucumis melo var. makuwa])

HSP 1 Score: 438.3 bits (1126), Expect = 4.4e-119
Identity = 230/257 (89.49%), Postives = 237/257 (92.22%), Query Frame = 0


Query: 1   MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTA 60
           M+PGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIV             RSG+DACTA
Sbjct: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIV-------------RSGDDACTA 60

Query: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRS 120
           YVTFKDAYSQETACLLSGA IVDQRVCITRWGHF+DEFGFWSRP G+ EEDST ASAQRS
Sbjct: 61  YVTFKDAYSQETACLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTSASAQRS 120

Query: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180
           QFISSAGNAVTMAQEVVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLSHRIG
Sbjct: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSHRIG 180

Query: 181 LTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240
           LTDM+GAGFEAVK+VDEKYHVL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL
Sbjct: 181 LTDMLGAGFEAVKSVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240

Query: 241 NRAAKVAADLGSRGLEH 258
           NRAAK AADLGSRGLEH
Sbjct: 241 NRAAKAAADLGSRGLEH 244

[Close]

BLAST of Lsi04G004410 vs. NCBI nr
Match: XP_022945905.1 (binding partner of ACD11 1-like [Cucurbita moschata])

HSP 1 Score: 435.6 bits (1119), Expect = 2.9e-118
Identity = 225/257 (87.55%), Postives = 237/257 (92.22%), Query Frame = 0


Query: 1   MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTA 60
           M+PGGYTVEVTGLSPKATEKD+LDFFAFSGAIELVEIV             RSGEDACTA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIV-------------RSGEDACTA 60

Query: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRS 120
           YV+FKDAYSQETACLLSGATIVDQRVCITRWGHF++EF FWSRPSGYHEED TP SAQRS
Sbjct: 61  YVSFKDAYSQETACLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPPSAQRS 120

Query: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180
           QF+S+AG AV+MAQ+VVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLS+RIG
Sbjct: 121 QFVSTAGTAVSMAQDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIG 180

Query: 181 LTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240
           LTDMIGAG+EA KT+DEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL
Sbjct: 181 LTDMIGAGYEAAKTMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240

Query: 241 NRAAKVAADLGSRGLEH 258
           NRAAK AADLGSRGLEH
Sbjct: 241 NRAAKAAADLGSRGLEH 244

[Close]

BLAST of Lsi04G004410 vs. NCBI nr
Match: XP_022988849.1 (binding partner of ACD11 1-like [Cucurbita maxima] >XP_022988857.1 binding partner of ACD11 1-like [Cucurbita maxima] >XP_023534995.1 binding partner of ACD11 1-like [Cucurbita pepo subsp. pepo] >XP_023535002.1 binding partner of ACD11 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 435.6 bits (1119), Expect = 2.9e-118
Identity = 229/257 (89.11%), Postives = 236/257 (91.83%), Query Frame = 0


Query: 1   MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTA 60
           M PGGYTVEVTGLSPKA EKDVLDFFAF G IELVEI+             RSGEDACTA
Sbjct: 1   MSPGGYTVEVTGLSPKAEEKDVLDFFAFCGPIELVEII-------------RSGEDACTA 60

Query: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRS 120
           YVTFKDAYSQETACLLSGATIVDQRVCITRWGHF+DEFGFWSRPSGYHEEDST ASAQRS
Sbjct: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFDDEFGFWSRPSGYHEEDST-ASAQRS 120

Query: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180
           QFISSAGNAVTMAQEVVKTML+MGYVLGKD LTKAK FDESHQVSATAAAKVADLSHRIG
Sbjct: 121 QFISSAGNAVTMAQEVVKTMLSMGYVLGKDALTKAKTFDESHQVSATAAAKVADLSHRIG 180

Query: 181 LTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDAL 240
           LTDMIGAGFEAVKT+DEKYHVLQTTKSAISATGRTAAAAADTVV+S YFSRGALF+SDAL
Sbjct: 181 LTDMIGAGFEAVKTMDEKYHVLQTTKSAISATGRTAAAAADTVVQSGYFSRGALFVSDAL 240

Query: 241 NRAAKVAADLGSRGLEH 258
           NRAAKVAADLGSRG+EH
Sbjct: 241 NRAAKVAADLGSRGVEH 243

[Close]

BLAST of Lsi04G004410 vs. TAIR 10
Match: AT1G14340.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 287.7 bits (735), Expect = 9.0e-78
Identity = 157/251 (62.55%), Postives = 186/251 (74.10%), Query Frame = 0


Query: 5   GYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTF 64
           GY VEVTGLSP  T  D++DFF+FSG I+ ++IV             RSGE ACTAYV F
Sbjct: 6   GYGVEVTGLSPSVTHNDLIDFFSFSGTIQDIDIV-------------RSGEQACTAYVMF 65

Query: 65  KDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPS-GYHEEDSTPASAQRSQFI 124
           KD+YSQETA LL+GATI+DQRVCITRWG   +EF FW+  S G+ +E  +   AQRS+F 
Sbjct: 66  KDSYSQETAVLLTGATILDQRVCITRWGQHHEEFDFWNATSRGFEDESDSQHYAQRSEF- 125

Query: 125 SSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTD 184
            +AG AVT AQEVVK MLA G+VLGKD L+KAKAFDESH VSA A A+V+ L  RIGLTD
Sbjct: 126 -NAGEAVTKAQEVVKIMLATGFVLGKDALSKAKAFDESHGVSAAAVARVSQLEQRIGLTD 185

Query: 185 MIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRA 244
            I  G EAV+  D++YHV  T KSA+ ATGRTAAAAA +VV SSYFS GAL++S AL RA
Sbjct: 186 KIFTGLEAVRMTDQRYHVSDTAKSAVFATGRTAAAAATSVVNSSYFSSGALWLSGALERA 241

Query: 245 AKVAADLGSRG 255
           AK A+DLG+RG
Sbjct: 246 AKAASDLGTRG 241

[Close]

BLAST of Lsi04G004410 vs. TAIR 10
Match: AT3G01210.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-52
Identity = 128/265 (48.30%), Postives = 163/265 (61.51%), Query Frame = 0


Query: 1   MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTA 60
           M P GY  +VT LSP+ATEKDV  FF+  G +ELVEI   + C            DA TA
Sbjct: 1   MYPCGYVAQVTNLSPQATEKDVHRFFSHCGIVELVEI---TGCQG----------DALTA 60

Query: 61  YVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRS 120
           YVTF+DAY+ + A LLSGATIVDQ V I+ +G +  E       +   EED +    +  
Sbjct: 61  YVTFRDAYALDMAVLLSGATIVDQTVWISVYGVYLHESN-----NLRQEEDYSVTVTRSD 120

Query: 121 QFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIG 180
            F SS G A+T+AQ+VV+TMLA GYVL KD + KAKA DES + S+  A K+A++SH +G
Sbjct: 121 AFASSPGEAITVAQQVVQTMLAKGYVLSKDAIGKAKALDESQRFSSLVATKLAEISHYLG 180

Query: 181 LTDMIGAGFEAVKTVDEKYHVLQTTKSAI-----------SATGRTAAAAADTVVRSSYF 240
           LT  I +  E V++ DEKYH    TKSA+           + TG+ AAAAA +VV S YF
Sbjct: 181 LTQNIQSSMELVRSADEKYHFSDFTKSAVLVTGTAAVAAATITGKVAAAAATSVVNSRYF 240

Query: 241 SRGALFMSDALNRAAKVAADLGSRG 255
           + GAL+ SDAL RAAK AA +G  G
Sbjct: 241 ANGALWFSDALGRAAKAAAHIGGGG 247

[Close]

BLAST of Lsi04G004410 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 143.3 bits (360), Expect = 2.7e-34
Identity = 94/255 (36.86%), Postives = 139/255 (54.51%), Query Frame = 0


Query: 7   TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKD 66
           TV+V+ +S  AT++D+ +FF+FSG I              +       E    AYVTFKD
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDI-------------LYLETQSETERTKLAYVTFKD 64

Query: 67  AYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRSQFISSA 126
               ETA LLSGATIVD  V ++    ++              E       + S     A
Sbjct: 65  LQGAETAVLLSGATIVDSSVIVSMAPDYQ-----------LSPEALASLEPKDSNKSPKA 124

Query: 127 GNAV-TMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMI 186
           G++V   A++VV +MLA G++LGKD + KAK+ DE HQ+++TA+AKVA    +IG TD I
Sbjct: 125 GDSVLRKAEDVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKI 184

Query: 187 GAGF----EAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALN 246
             G     E V+ VD+KY V + TKSAI+A  +T + A   ++++ Y   GA +++ A N
Sbjct: 185 NTGTVVVGEKVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFN 235

Query: 247 RAAKVAADLGSRGLE 257
           + AK A ++G +  E
Sbjct: 245 KVAKAAEEVGQKAKE 235

[Close]

BLAST of Lsi04G004410 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.9 bits (359), Expect = 3.6e-34
Identity = 90/254 (35.43%), Postives = 139/254 (54.72%), Query Frame = 0


Query: 7   TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKD 66
           TV+V+ +S +ATE+D+ +FF+FSG I  +E                  + +  AYVTFKD
Sbjct: 5   TVKVSNVSLEATERDLKEFFSFSGDIAYLE-------------TQSENDGSKLAYVTFKD 64

Query: 67  AYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRSQFISSA 126
               ETA LL+G+TIVD  V +T    ++        P      +S   S + S      
Sbjct: 65  LQGAETAVLLTGSTIVDSSVTVTMSPDYQ------LPPDALASIESLKESNKSSSPTRED 124

Query: 127 GNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIG 186
            +    A++VV  M++ G+VLGKD + KAK+ DE HQ+++TA+A+V     RIG T+ I 
Sbjct: 125 VSVFRKAEDVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKIN 184

Query: 187 AG----FEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNR 246
            G     E VK VD+K+ V + TKSAI+A  +T + A   ++++ Y   GA +++ A NR
Sbjct: 185 TGTTVVSEKVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNR 239

Query: 247 AAKVAADLGSRGLE 257
            +K A ++G +  E
Sbjct: 245 VSKAAEEVGQKAKE 239

[Close]

BLAST of Lsi04G004410 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 )

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-33
Identity = 94/254 (37.01%), Postives = 139/254 (54.72%), Query Frame = 0


Query: 7   TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKD 66
           +V+V  LS  ATE D+ +FF+FSG +E ++I              +S E   +AYVTFK+
Sbjct: 7   SVKVGNLSSGATEHDIKEFFSFSGEVESIDI--------------QSNEH--SAYVTFKE 66

Query: 67  AYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRSQFISSA 126
               ETA LLSGA+I DQ V I    ++       S P+  H E  +          S A
Sbjct: 67  TQGAETAVLLSGASIADQSVIIELAPNY-------SPPAAPHAETQS----------SGA 126

Query: 127 GNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIG 186
            + V  A++VV +MLA G++LGKD + KAKAFDE H  ++TA A VA L  +IGL+  + 
Sbjct: 127 ESVVQKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLT 186

Query: 187 AGF----EAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNR 246
           AG     E +K VD+ + V + TKS  +A  +T ++A   V+++ Y   G  + + A NR
Sbjct: 187 AGTSLVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNR 227

Query: 247 AAKVAADLGSRGLE 257
            A+ A ++G +  E
Sbjct: 247 VAQAAGEVGQKTKE 227

The following BLAST results are available for this feature:

BLAST of Lsi04G004410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFD5	2.5e-32	37.01	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
P87216	1.5e-05	25.25	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of Lsi04G004410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSM6	6.7e-121	90.27	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604930 PE=4 SV...	[more]
A0A5D3CVI0	2.1e-119	89.49	Binding partner of ACD11 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BET5	2.1e-119	89.49	binding partner of ACD11 1 OS=Cucumis melo OX=3656 GN=LOC103489100 PE=4 SV=1	[more]
A0A6J1JE77	1.4e-118	89.11	binding partner of ACD11 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486072 PE=4...	[more]
A0A6J1G2B1	1.4e-118	87.55	binding partner of ACD11 1-like OS=Cucurbita moschata OX=3662 GN=LOC111450009 PE...	[more]

BLAST of Lsi04G004410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135186.1	1.4e-120	90.27	binding partner of ACD11 1 [Cucumis sativus] >KGN51899.1 hypothetical protein Cs...	[more]
XP_038892042.1	2.4e-120	89.49	binding partner of ACD11 1 [Benincasa hispida]	[more]
XP_008446330.1	4.4e-119	89.49	PREDICTED: binding partner of ACD11 1 [Cucumis melo] >KAA0034401.1 binding partn...	[more]
XP_022945905.1	2.9e-118	87.55	binding partner of ACD11 1-like [Cucurbita moschata]	[more]
XP_022988849.1	2.9e-118	89.11	binding partner of ACD11 1-like [Cucurbita maxima] >XP_022988857.1 binding partn...	[more]

BLAST of Lsi04G004410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14340.1	9.0e-78	62.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G01210.1	1.0e-52	48.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G17720.1	2.7e-34	36.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	3.6e-34	35.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.1	1.8e-33	37.01	binding partner of acd11 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..91 e-value: 2.9E-7 score: 32.5
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 1..255
None	No IPR available	PANTHER	PTHR32343:SF26	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..255
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..85 score: 8.569372
IPR034360	Vip1-like, RNA recognition motif, plant	CDD	cd12269	RRM_Vip1_like	coord: 8..89 e-value: 3.82872E-32 score: 110.998
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G004410.1	Lsi04G004410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding