Lsi04G004120 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G004120
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 4010946 .. 4011387 (+)
RNA-Seq ExpressionLsi04G004120
SyntenyLsi04G004120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAAAACTGTGTAATGAAAATGGCAGGCCAAACCCAACAATTGGTTATGATTTTTCTCCTTGTCTCTCTACTCATCTTCTTCAACACTGTCTCTGCATCAAGTACACAATCCTCTAACTTTGTTTAATGAAATTACTTCCTTTATAATTCTCACTTTATCTTAATAAGTTTCTATGTTCAGGGGCAGCAATTATGATCCATCTTGGCCAGGATTTTCCAGCTTTCCATGGTGCACACCAGGTATATATATATATGTATGATTGATTTATAACTGATGTGTATTATTAAAAGAAATGAGTTAGGACTGACGGATTTCTTCATTGGCAGAAGAATCAGCCACTGATGAAGTTGTTGAATGGCAGAATGGATTTGCAGTACAATGACTATCCAATATTTGGGGCTAATCCTCGCCACACTCCAAAGCCAACGGGGAAAGTTTGA

mRNA sequence

ATCAAAACTGTGTAATGAAAATGGCAGGCCAAACCCAACAATTGGTTATGATTTTTCTCCTTGTCTCTCTACTCATCTTCTTCAACACTGTCTCTGCATCAAGGGCAGCAATTATGATCCATCTTGGCCAGGATTTTCCAGCTTTCCATGGTGCACACCAGAAGAATCAGCCACTGATGAAGTTGTTGAATGGCAGAATGGATTTGCAGTACAATGACTATCCAATATTTGGGGCTAATCCTCGCCACACTCCAAAGCCAACGGGGAAAGTTTGA

Coding sequence (CDS)

ATGAAAATGGCAGGCCAAACCCAACAATTGGTTATGATTTTTCTCCTTGTCTCTCTACTCATCTTCTTCAACACTGTCTCTGCATCAAGGGCAGCAATTATGATCCATCTTGGCCAGGATTTTCCAGCTTTCCATGGTGCACACCAGAAGAATCAGCCACTGATGAAGTTGTTGAATGGCAGAATGGATTTGCAGTACAATGACTATCCAATATTTGGGGCTAATCCTCGCCACACTCCAAAGCCAACGGGGAAAGTTTGA

Protein sequence

MKMAGQTQQLVMIFLLVSLLIFFNTVSASRAAIMIHLGQDFPAFHGAHQKNQPLMKLLNGRMDLQYNDYPIFGANPRHTPKPTGKV
Homology
BLAST of Lsi04G004120 vs. ExPASy TrEMBL
Match: A0A1S3BEE6 (uncharacterized protein LOC103489129 OS=Cucumis melo OX=3656 GN=LOC103489129 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.9e-28
Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 0

Query: 1   MKMAGQTQQLVMIFLLVSLL-IFFNTVSASRAAIMIHLGQDFPAFHGAHQKNQPLMKLLN 60
           MKMA QTQ LVM FLL+SLL IFFNTVSASRA  M+HLGQDFPA   A+QKNQP   L N
Sbjct: 26  MKMADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWN 85

Query: 61  GRMDLQYNDYPIFGANPRHTPKPTGKV 87
           GRMDLQ+NDY IFGANPRHTPKPTGKV
Sbjct: 86  GRMDLQFNDYQIFGANPRHTPKPTGKV 112

BLAST of Lsi04G004120 vs. ExPASy TrEMBL
Match: A0A0A0KQN6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605220 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.5e-28
Identity = 68/85 (80.00%), Postives = 71/85 (83.53%), Query Frame = 0

Query: 3  MAGQTQQLVMIFLLVSLL-IFFNTVSASRAAIMIHLGQDFPAFHGAHQKNQPLMKLLNGR 62
          MA QTQ LVM F LVSLL IFFNTVSASRA +MIHLGQDFPA    +QKNQPL  L NGR
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 63 MDLQYNDYPIFGANPRHTPKPTGKV 87
          MDLQ+NDY IFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

BLAST of Lsi04G004120 vs. ExPASy TrEMBL
Match: A0A5A7SX31 (Putative lipoprotein yfhM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00360 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.2e-27
Identity = 67/85 (78.82%), Postives = 71/85 (83.53%), Query Frame = 0

Query: 3  MAGQTQQLVMIFLLVSLL-IFFNTVSASRAAIMIHLGQDFPAFHGAHQKNQPLMKLLNGR 62
          MA QTQ LVM FLL+SLL IFFNTVSASRA  M+HLGQDFPA   A+QKNQP   L NGR
Sbjct: 1  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 60

Query: 63 MDLQYNDYPIFGANPRHTPKPTGKV 87
          MDLQ+NDY IFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

BLAST of Lsi04G004120 vs. ExPASy TrEMBL
Match: B9S8Y1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0836660 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 34/83 (40.96%), Postives = 45/83 (54.22%), Query Frame = 0

Query: 1  MKMAGQTQQLVMIFLLVSLLIF-FNTVSASRAAIMIHLGQDFPAFHGAHQKNQPLMKLLN 60
          M +     QLV+I L+ S L+F  N  S SRA  + H GQ  P+    +   Q + KL N
Sbjct: 1  MAIIKMLHQLVIILLVFSQLLFSLNAASTSRANELFHGGQHVPSSSFENTYLQRMRKLGN 60

Query: 61 GRMDLQYNDYPIFGANPRHTPKP 83
          GR D++ NDY   G N  HTP+P
Sbjct: 61 GRKDIEVNDYSESGPNKSHTPEP 83

BLAST of Lsi04G004120 vs. ExPASy TrEMBL
Match: A0A5N5LR04 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_012623 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.0e-04
Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 0

Query: 1  MKMAGQTQQLVMIFLLVSLLIFFNTVSASRAAI-MIHLGQD-FPAFHGAHQKNQPLMKLL 60
          ++MAG+    ++I LLVS LIF    SASR  + +++  QD   + H A  + Q + K  
Sbjct: 7  LEMAGKFLHALVIILLVSQLIFSKATSASRTGVNLLYNSQDTLSSDHNA--QLQKITKRG 66

Query: 61 NGRMDLQYNDYPIFGANPRHTPKP 83
           GR +L++NDY   GAN RHTP+P
Sbjct: 67 AGRANLEFNDYSNTGANGRHTPEP 88

BLAST of Lsi04G004120 vs. NCBI nr
Match: XP_008446367.1 (PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 6.0e-28
Identity = 69/87 (79.31%), Postives = 73/87 (83.91%), Query Frame = 0

Query: 1   MKMAGQTQQLVMIFLLVSLL-IFFNTVSASRAAIMIHLGQDFPAFHGAHQKNQPLMKLLN 60
           MKMA QTQ LVM FLL+SLL IFFNTVSASRA  M+HLGQDFPA   A+QKNQP   L N
Sbjct: 26  MKMADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWN 85

Query: 61  GRMDLQYNDYPIFGANPRHTPKPTGKV 87
           GRMDLQ+NDY IFGANPRHTPKPTGKV
Sbjct: 86  GRMDLQFNDYQIFGANPRHTPKPTGKV 112

BLAST of Lsi04G004120 vs. NCBI nr
Match: KGN51928.1 (hypothetical protein Csa_009059 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 68/85 (80.00%), Postives = 71/85 (83.53%), Query Frame = 0

Query: 3  MAGQTQQLVMIFLLVSLL-IFFNTVSASRAAIMIHLGQDFPAFHGAHQKNQPLMKLLNGR 62
          MA QTQ LVM F LVSLL IFFNTVSASRA +MIHLGQDFPA    +QKNQPL  L NGR
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 63 MDLQYNDYPIFGANPRHTPKPTGKV 87
          MDLQ+NDY IFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

BLAST of Lsi04G004120 vs. NCBI nr
Match: KAA0034426.1 (putative lipoprotein yfhM [Cucumis melo var. makuwa] >TYK17708.1 putative lipoprotein yfhM [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 6.6e-27
Identity = 67/85 (78.82%), Postives = 71/85 (83.53%), Query Frame = 0

Query: 3  MAGQTQQLVMIFLLVSLL-IFFNTVSASRAAIMIHLGQDFPAFHGAHQKNQPLMKLLNGR 62
          MA QTQ LVM FLL+SLL IFFNTVSASRA  M+HLGQDFPA   A+QKNQP   L NGR
Sbjct: 1  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 60

Query: 63 MDLQYNDYPIFGANPRHTPKPTGKV 87
          MDLQ+NDY IFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

BLAST of Lsi04G004120 vs. NCBI nr
Match: KAG7032221.1 (hypothetical protein SDJN02_06264, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-21
Identity = 57/84 (67.86%), Postives = 64/84 (76.19%), Query Frame = 0

Query: 3  MAGQTQQLVMIFLLVSLLIFFNTVSASRAAIMIHLGQDFPAFHGAHQKNQPLMKLLNGRM 62
          MAGQTQ  +M+ +L+SLL+     SAS AAIMIHLGQDF A   AHQ  QPL KLLN RM
Sbjct: 1  MAGQTQHFLMVLILLSLLL-----SASGAAIMIHLGQDFSASQAAHQTKQPLQKLLNDRM 60

Query: 63 DLQYNDYPIFGANPRHTPKPTGKV 87
          DLQYNDYP+  AN RHTPKPTG+V
Sbjct: 61 DLQYNDYPVSEANHRHTPKPTGRV 79

BLAST of Lsi04G004120 vs. NCBI nr
Match: KAG6601439.1 (hypothetical protein SDJN03_06672, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 3.3e-18
Identity = 52/75 (69.33%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 12 MIFLLVSLLIFFNTVSASRAAIMIHLGQDFPAFHGAHQKNQPLMKLLNGRMDLQYNDYPI 71
          M+ +L+SLL+     SAS AAIMIHLGQDF A   AHQK QPL KLLN RMDLQYNDYP+
Sbjct: 1  MVLILLSLLL-----SASGAAIMIHLGQDFSASQAAHQKKQPLQKLLNDRMDLQYNDYPV 60

Query: 72 FGANPRHTPKPTGKV 87
            AN RHTPKPTG+V
Sbjct: 61 SEANHRHTPKPTGRV 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BEE62.9e-2879.31uncharacterized protein LOC103489129 OS=Cucumis melo OX=3656 GN=LOC103489129 PE=... [more]
A0A0A0KQN66.5e-2880.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605220 PE=4 SV=1[more]
A0A5A7SX313.2e-2778.82Putative lipoprotein yfhM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
B9S8Y11.3e-0440.96Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0836660 PE=4 SV=1[more]
A0A5N5LR045.0e-0441.67Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_012623 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_008446367.16.0e-2879.31PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo][more]
KGN51928.11.3e-2780.00hypothetical protein Csa_009059 [Cucumis sativus][more]
KAA0034426.16.6e-2778.82putative lipoprotein yfhM [Cucumis melo var. makuwa] >TYK17708.1 putative lipopr... [more]
KAG7032221.14.2e-2167.86hypothetical protein SDJN02_06264, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601439.13.3e-1869.33hypothetical protein SDJN03_06672, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G004120.1Lsi04G004120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane