Lsi04G003930 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G003930
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr04: 3887566 .. 3890642 (+)
RNA-Seq ExpressionLsi04G003930
SyntenyLsi04G003930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTGTGTTAACTGTCTATACTGCTACAAGTAAGACACTCTGGTAGACAGTTCTATTCATTGTAGCAGGGACATGGAAAAGATTCAAACACAATTGCAGTAATTGTACAAAGGTTCACTGTAATAAGCCTGAAGAGTGATCAGCCTTGTGCTCAACAACCAAGTTTATGCACACATGAGGAGCCTAAAGAGTAAAATCAGTATCAACGTGCCCATTCTGTGCTCTGCAGCTGAAATGGCAACCAAGTTTTCAAACGCACACAAGCACATACATGCATGCAACAACCATATATTTGCAACTCGAAGTGTTCTGTTCAGTAGCTAAAGAACCTTATCTCACCATTCATCTCAAAACATCCTTAAAAGTAAGCATAAGATGGACCTCAAGAGTATAGAACCTAGCCTCAGTTGTTAATTGAAAAGAAAAACTATTAGATTGCAAAGCATCAAAGCGAACTACTAATATGACACACCTCCGGGTATTTATGGGGTGAGTGTATTGAACTTTTGGAACAAAAATACTGGCTTACTGTGAGCCATCTCACCACTATCAACCTCCTATATCTCAAGAATTTGTACACACAAATTTGAAAAAGAACTATAAACTTGACTGATCCATCTCACTCAAATGACTTCTCTTGCTGTAAAAGTTTGAAAGAGAGCATACCAGTGCAGATATCTTTTCTGATCAATCAGGAAATTTATCTTGCAACTGTCAAAGTGGTTGCATTCATGCAACAAATAGTACTGGCTCTATACTAATTAAACATAATTCTTCTTAATATAATTCACAGTGACAACCTAATTGGCAAAAGATCAAATTGGATAACTAAAGTCCCATTTGGTAACTATTTAGTTTTTGGTTTTTAATTTTTGACAATTAAGCATACAAATATCTCTATCACCTCTAGATTTCTTGTTTTGTTATCTACTTTTTACCCATGTTTTCAAAAACCAAGTCAACTTTTAAAAACTAAAAAAAGTCGTTTTTAAAAACTTATTTTTGCTTTTAGAATTTGGCTAAGAATTCAACTCCTGCACTTAAGAAAAATACAAACTATTGTAAGAAAATGTGACAACATAGCCTTCATTTTCAAAAACCAAAAACCAAAAACCAAATGGGACCTAAACATCCAAGATTCAAATCCCAAAACTCCAGTTACCTTTAAAGGAGGACAAAAAAAGGGACCTGTTCAAGCTTTCCTTGATGATACTTCAAGTTATGTTGTCTTATGAGTTATTTTGGAATGATCATTAATTTTTCTTTGGTCATACTATTTTGCAGGTAAGGAGGATACTTTTTCATGCCAGGTCGCTAATCACATACATTAGAAGCCTGTAACAAACTCTAGCCAATATGCGGTCGATACTTTTCTTGTGCATTATATTCTTAATTAAAATACAAAAAAATCTTTCATGAGTTAAACTATTATGGGAAAGGATCCATAAAATCCTGAAATGGGGGCATCGTAAGCCCCAAACATAAATAAAATTCATAAGAGCGTCATTTATCACTAAGACGTAATAAAAGCTACTAAAAGTCTGATAACTCTATCCCGCTAGTGTTCTAAGAGCACTATGAAGGAAGAACGATCAGATCAATCCTATAATAAATCATATACCATATTATCACAGCATACACCATATTATCACAGCATTCTATTTTCTATTGCAAAAGAATTGAATCGTTCACTACAAAGGGAGAGGACACACCAATGGCTTAATCTGAAAATGGAAAAGGCTAACAGCCTGAACCCTTTCACCTGAGATAAATCTCCCACCTCTTTCTAAAGAAGTGGAAGACATCAAACAAATAGAAAGAACCAAAAGCGAAACTCATAACTAAGATTAGTTATAATTAAAATCATAAGACATGGTTAGCTTTCAAATACACCTCTTATCAATAGTCGACAAGGCTCAGTTCCCATGCCACAAACAGGAAACCAACAAATCATCAAATTAGTTCACCACAAAGTCCAGATGAAAAGTTAAACCATGCAGTTTTCATACAGACAAACCAGGAATTTCCTAAAAGGAAAACATCACGTGTTATAGTTCACAAATGAAGTTCTTATTAAGAACACATAGTTCACAAATACAGTGACAGGTAATGATTTTTGCCGATGTTTCCAACTATAGCTAAAAGAGGGAATTCAGATGAAGCCTTTATCTAAATGACAAAGGCAGCATTACGGAATAGGATTGTGAAAAATGATATTAGGCAACAATGGCATGAACAATTATTCAGAAATTTGAATTAAATCAAAAGTGATGTAAGGTAAGATCTCTTCTTTCCTATGATACTTTGAGATAAAATGATCAGCTTGCGGTGAAGACAAAGAGTTTAAGGAAGATATCTTCCACGGCCTGTTAAAAGATCGACAAGAAACTAAAATACTCTCAACAAAATATTGTTTTCCGCCTCAGGAATCAGATGTAACGAGCAGCAACCAACTTCACTTACCTCCCGCAGAGGCCTTCTGTTCTTCCAAATTCTCAGAACCCGCATTTACCTCCCGGTTTTTGGAATTCGTATTTTGCTGGGTAGCATTTGGAGTTATTTCCTTCTCCAATTCGATAATAGCCTCCTCCTCTGCCATTTTCTCAGCCTTCAGAATCGGCTCGTAATAATCCGCATGGGCCTCCATACATTTCTTCAGAGCCCCAGTCACTTCAAAGCACTTCTCTACAATATCCTCCTTGTTCTTCTCCGCCTCCTCAATGCACTTCTCCCACTCTATGAAGCTATCTTTGCAACCACCCCCTTTCATAAACAAGCAAAACCCACATTCTCCCTCCTCTTCCTCTTCTAGCCCCTCTCCTTCTTCATCTCCACCTCCATTTTCGGGAATCTTTCCCGATTGGCCTGATTCCTCGGAAGATTTTTCCTCAGAGTGATCGGGGGAACCCGATTGTGGTTGATCGTCCAGGGTTTCAGTGGCGGCGGCGTTTGATTCTGCGTCTTGGAGTTTCGAATCCGAAGTGGACATCCTAGTCGGTGCCGAAGGAGCAAACGGATTTGATGTCGCGAGGTTTGCAAAGGCGGAATCGTTCGTTGTTCCACCGCCGGCTTAA

mRNA sequence

ATGCCGTGTGGACATGGAAAAGATTCAAACACAATTGCAGTAATTGTACAAAGGTTCACTGTAATAAGCCTGAAGAGTGATCAGCCTTGTGCTCAACAACCAAATTGCAAAGCATCAAAGCGAACTACTAATATGACACACCTCCGGTCGACAAGGCTCAGTTCCCATGCCACAAACAGGAAACCAACAAATCATCAAATTAGTTCACCACAAAGTCCAGATGAAAAGTTAAACCATGCAGTTTTCATACAGACAAACCAGGAATTTCCTAAAAGGAAAACATCACCTTGCGGTGAAGACAAAGAGTTTAAGGAAGATATCTTCCACGGCCTGTTAAAAGATCGACAAGAAACTAAAATACTCTCAACAAAATATTGTTTTCCGCCTCAGGAATCAGATGTAACGAGCAGCAACCAACTTCACTTACCTCCCGCAGAGGCCTTCTGTTCTTCCAAATTCTCAGAACCCGCATTTACCTCCCGGTTTTTGGAATTCGTATTTTGCTGGGTAGCATTTGGAGTTATTTCCTTCTCCAATTCGATAATAGCCTCCTCCTCTGCCATTTTCTCAGCCTTCAGAATCGGCTCAGCCCCAGTCACTTCAAAGCACTTCTCTACAATATCCTCCTTGTTCTTCTCCGCCTCCTCAATGCACTTCTCCCACTCTATGAAGCTATCTTTGCAACCACCCCCTTTCATAAACAAGCAAAACCCACATTCTCCCTCCTCTTCCTCTTCTAGCCCCTCTCCTTCTTCATCTCCACCTCCATTTTCGGGAATCTTTCCCGATTGGCCTGATTCCTCGGAAGATTTTTCCTCAGAGGTTTCAGTGGCGGCGGCGTTTGATTCTGCGTCTTGGAGTTTCGAATCCGAAGTGGACATCCTAGTCGGTGCCGAAGGAGCAAACGGATTTGATGTCGCGAGGTTTGCAAAGGCGGAATCGTTCGTTGTTCCACCGCCGGCTTAA

Coding sequence (CDS)

ATGCCGTGTGGACATGGAAAAGATTCAAACACAATTGCAGTAATTGTACAAAGGTTCACTGTAATAAGCCTGAAGAGTGATCAGCCTTGTGCTCAACAACCAAATTGCAAAGCATCAAAGCGAACTACTAATATGACACACCTCCGGTCGACAAGGCTCAGTTCCCATGCCACAAACAGGAAACCAACAAATCATCAAATTAGTTCACCACAAAGTCCAGATGAAAAGTTAAACCATGCAGTTTTCATACAGACAAACCAGGAATTTCCTAAAAGGAAAACATCACCTTGCGGTGAAGACAAAGAGTTTAAGGAAGATATCTTCCACGGCCTGTTAAAAGATCGACAAGAAACTAAAATACTCTCAACAAAATATTGTTTTCCGCCTCAGGAATCAGATGTAACGAGCAGCAACCAACTTCACTTACCTCCCGCAGAGGCCTTCTGTTCTTCCAAATTCTCAGAACCCGCATTTACCTCCCGGTTTTTGGAATTCGTATTTTGCTGGGTAGCATTTGGAGTTATTTCCTTCTCCAATTCGATAATAGCCTCCTCCTCTGCCATTTTCTCAGCCTTCAGAATCGGCTCAGCCCCAGTCACTTCAAAGCACTTCTCTACAATATCCTCCTTGTTCTTCTCCGCCTCCTCAATGCACTTCTCCCACTCTATGAAGCTATCTTTGCAACCACCCCCTTTCATAAACAAGCAAAACCCACATTCTCCCTCCTCTTCCTCTTCTAGCCCCTCTCCTTCTTCATCTCCACCTCCATTTTCGGGAATCTTTCCCGATTGGCCTGATTCCTCGGAAGATTTTTCCTCAGAGGTTTCAGTGGCGGCGGCGTTTGATTCTGCGTCTTGGAGTTTCGAATCCGAAGTGGACATCCTAGTCGGTGCCGAAGGAGCAAACGGATTTGATGTCGCGAGGTTTGCAAAGGCGGAATCGTTCGTTGTTCCACCGCCGGCTTAA

Protein sequence

MPCGHGKDSNTIAVIVQRFTVISLKSDQPCAQQPNCKASKRTTNMTHLRSTRLSSHATNRKPTNHQISSPQSPDEKLNHAVFIQTNQEFPKRKTSPCGEDKEFKEDIFHGLLKDRQETKILSTKYCFPPQESDVTSSNQLHLPPAEAFCSSKFSEPAFTSRFLEFVFCWVAFGVISFSNSIIASSSAIFSAFRIGSAPVTSKHFSTISSLFFSASSMHFSHSMKLSLQPPPFINKQNPHSPSSSSSSPSPSSSPPPFSGIFPDWPDSSEDFSSEVSVAAAFDSASWSFESEVDILVGAEGANGFDVARFAKAESFVVPPPA
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..270

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G003930.1Lsi04G003930.1mRNA