Lsi04G003380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G003380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr04: 3408316 .. 3410189 (-)
RNA-Seq Expression	Lsi04G003380
Synteny	Lsi04G003380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAAAGAAGGGGTTGAAGGATGGGGAGGTTTTTGGGGGTAACCAAAACAGTGATGGTGAAGCCATAAGAAGCTAAGAAATGGGTGAGATCGAGGAGTGGGAGCATATGGCCCTGAGCTGGGTATGGAAAAACCAGCAGGTGGGGTAATGGCGACGAAGGCAACGATGCCATTGAAAGGAGATCTGATTGAGCTCTGATGAGAAAATCGTTACGGGAGAGAGCTGCTGAATCTGTTATGGAACAGAGAGGGAGATTTTATTGAATTTTGATGGAACAACGTGATAAATGTCTCTAAAAGAAATCGCCACTTGGGCCACGTGGGGAACTGAACTTTGAAGTTGTCACGTGTCAGCTTATCACCTGCAACCAAAGAAATCAGACAAAAGCATAGAAGGGGATAGGGGTTGTTTTAATATGTTCGAGTTAAACACTCCTGAAGGAAAAAAGGACAAATTTTAGGGAGGGAAAGAGATTTAAGACCAAGCAAAGAAGAAGGGGATGGAACTTCAGCAAATGAGCTGCAGAATTATTTACCATCTTTCCTTCCAGTATGAGTGAAGGAGAACGAGCCACGTAGGGGCAAAAGTGGATAATTAAGCGACTAGATAATTTGAATTTATCATCATTATTGCTAGTTTTGGGAGGTTTAGGAGGGGGGATAGTTTGTTTAATAACTATGAGAACAGAGATGTGGGTGCTGGAGAACAACAGATAGTCGAAGCTAAATGACAAGAAGATATGACATATTTGAGGCTTTGAGAAACCATGGTTGTTTCTGCACAACTCTTGATGGAATTTATGATAAAAGTCAACGACGGATTGCATAAAAGAGAAAAGCTTTCTGGACGATTATACAGGGAAACTAACGTGAAAAACACAAGTGAAACTTCGTCTTCAGTTCAAGAGAATCAAACAAGTAAGCAGCAAAAGTTAGATAGACAGGTGACTGTCTGTGGTTACATAGTTTCTTTCTGATCCTTTAATTGTTTATGGTTTTTGGCATTTCATATTGTTGTTACTTGTTTGATTAGGCGACTGATAATTTCCATAAACCCTCTCTGATTCAGATTCTCAATGTCAAACCCCATACTTTGCAAACACAAGTCAAAAGTTGGGGCCTCCAATTAACTTGTGTTCTTGAGTTGCTGACAAAACTAACAAAGAAGAAAGGAAGATTTATGTTTGAGAACCAGCACCATTTGTTTCTAAGTTCCAGTCAAGTACCAGAGATTTATCATTGCCTATGAAATAACAATCATTTTTCTTTACAGGCTGCTGGTAGTTTCACAGAGACGAAGCTCAAACTGACTTTGACTAGACCAGAGGTGAAGAGTTCAGCTGAGCTAGTGGAGGAAGCTAGTGGTGAAACAATGATGGCCAAAATGCGAAAGTTCAAAAGCTAGACCACTCAACATAAAGGTAATAATATTGGGAACTTTACACTTTCACGATTCTTCTTCTGTCCTTTTACTTAGTTGATTGATGATAGGCAATTCCACGAGGAAGTTTAGTCACAGAACTAATTTAATTGAGATTTTTTTTTATAAAAAAAAAATAAAATTAAATGGGTAATAATTCTCCATGGGCTTGATCTCCATGAGTTATTTGAATGAAAATTCTTGTTTCGATCTCAAAATTTAATGGCCAATTTTCATGGCCACAGAGAATGAAATAGGTGGCTTTTCTGTCCTTGTCTTGATAATAACATCCCTAGAATTAAGAGAAAAATGACATTAAAGTTGATTATTGCAATGTGAATTATAACTTTATCTCATGACAAAATAATTTCATATACTTTTAGTAATATAGACTTATATAATGAGAGAAATCAACAAACTCTTTTAGATTAACAAACTCTTAGGACTATTTTCTC

mRNA sequence

CTGAAAGAAGGGGTTGAAGGATGGGGAGGTTTTTGGGGGTAACCAAAACAGTGATGGTGAAGCCATAAGAAGCTAAGAAATGGGTGAGATCGAGGAGTGGGAGCATATGGCCCTGAGCTGGGTATGGAAAAACCAGCAGGTGGGGTAATGGCGACGAAGGCAACGATGCCATTGAAAGGAGATCTGATTGAGCTCTGATGAGAAAATCGTTACGGGAGAGAGCTGCTGAATCTGTTATGGAACAGAGAGGGAGATTTTATTGAATTTTGATGGAACAACGTGATAAATGTCTCTAAAAGAAATCGCCACTTGGGCCACGTGGGGAACTGAACTTTGAAGTTGTCACGTGTCAGCTTATCACCTGCAACCAAAGAAATCAGACAAAAGCATAGAAGGGGATAGGGGTTGTTTTAATATGTTCGAGTTAAACACTCCTGAAGGAAAAAAGGACAAATTTTAGGGAGGGAAAGAGATTTAAGACCAAGCAAAGAAGAAGGGGATGGAACTTCAGCAAATGAGCTGCAGAATTATTTACCATCTTTCCTTCCAGTATGAGTGAAGGAGAACGAGCCACGTAGGGGCAAAAGTGGATAATTAAGCGACTAGATAATTTGAATTTATCATCATTATTGCTAGTTTTGGGAGGTTTAGGAGGGGGGATAGTTTGTTTAATAACTATGAGAACAGAGATGTGGGTGCTGGAGAACAACAGATAGTCGAAGCTAAATGACAAGAAGATATGACATATTTGAGGCTTTGAGAAACCATGGTTGTTTCTGCACAACTCTTGATGGAATTTATGATAAAAGTCAACGACGGATTGCATAAAAGAGAAAAGCTTTCTGGACGATTATACAGGGAAACTAACGTGAAAAACACAAGTGAAACTTCGTCTTCAGTTCAAGAGAATCAAACAAGTAAGCAGCAAAAGTTAGATAGACAGGCTGCTGGTAGTTTCACAGAGACGAAGCTCAAACTGACTTTGACTAGACCAGAGGTGAAGAGTTCAGCTGAGCTAGTGGAGGAAGCTAGTGGTGAAACAATGATGGCCAAAATGCGAAAGTTCAAAAGCTAGACCACTCAACATAAAGGTAATAATATTGGGAACTTTACACTTTCACGATTCTTCTTCTGTCCTTTTACTTAGTTGATTGATGATAGGCAATTCCACGAGGAAGTTTAGTCACAGAACTAATTTAATTGAGATTTTTTTTTATAAAAAAAAAATAAAATTAAATGGGTAATAATTCTCCATGGGCTTGATCTCCATGAGTTATTTGAATGAAAATTCTTGTTTCGATCTCAAAATTTAATGGCCAATTTTCATGGCCACAGAGAATGAAATAGGTGGCTTTTCTGTCCTTGTCTTGATAATAACATCCCTAGAATTAAGAGAAAAATGACATTAAAGTTGATTATTGCAATGTGAATTATAACTTTATCTCATGACAAAATAATTTCATATACTTTTAGTAATATAGACTTATATAATGAGAGAAATCAACAAACTCTTTTAGATTAACAAACTCTTAGGACTATTTTCTC

Coding sequence (CDS)

ATGGTTGTTTCTGCACAACTCTTGATGGAATTTATGATAAAAGTCAACGACGGATTGCATAAAAGAGAAAAGCTTTCTGGACGATTATACAGGGAAACTAACGTGAAAAACACAAGTGAAACTTCGTCTTCAGTTCAAGAGAATCAAACAAGTAAGCAGCAAAAGTTAGATAGACAGGCTGCTGGTAGTTTCACAGAGACGAAGCTCAAACTGACTTTGACTAGACCAGAGGTGAAGAGTTCAGCTGAGCTAGTGGAGGAAGCTAGTGGTGAAACAATGATGGCCAAAATGCGAAAGTTCAAAAGCTAG

Protein sequence

MVVSAQLLMEFMIKVNDGLHKREKLSGRLYRETNVKNTSETSSSVQENQTSKQQKLDRQAAGSFTETKLKLTLTRPEVKSSAELVEEASGETMMAKMRKFKS

Homology

The following BLAST results are available for this feature:

BLAST of Lsi04G003380 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G003380 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G003380 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G003380 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G003380.1	Lsi04G003380.1	mRNA