Lsi04G003060 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G003060
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DNL-type domain-containing protein
Location	chr04: 3103515 .. 3106278 (+)
RNA-Seq Expression	Lsi04G003060
Synteny	Lsi04G003060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCAATTGAAATTAGCCAGTTACCTAATGATAACAATATTCTTCGATCAAGTGTCGTTTGTTAATTGGAGGCTGCAGGAAAACGACATGTCGGCTTTCTAGAGTATGAAGAGAGCAACAGGAGGGGCAGCTTACTGAATAAGCGACAACTGCATCCATGGCCGTGGCAAAGACTGTATTCTTCTCCTCTCCCGCGCTTCTTCACCAGTCCTTCAACTCTTGGGAGACTCGGCGACATCCATCTATCAACCCATTCAAACCTATAGTCTTTTCGCAAGCAAACCCTAGCAATGGCGTCTTCATTAGGTGAATAATCAAATTCTTCTCTTCGTCCTCTCTGTATCTTCAATTTTTGTCTTCTTTATTATTCCTTTTATCTCTTTACACGAGCAAATTGAGCATTTCTTTTCCAGAAGTAGAAACTTCCCTACAGCACCAGTTACTCGGGAACGCGGAAATAAGGTGCTTACGGTTTCCAGATTGGTGGATGTTTATCCTGGAGACGACGATGAATCTGCACAGAGAAATTCAGATACGGTATGAGTTCCGTAATGAATCTTGAACTGAGCTAGAGATTCTTGAACTTATGGCTTGTATTTATCTTTCTTCGATTTGCAGGGGGCAGCCATTGACATAAAGCTTCCAAGAAGAAGTTTGATGGTAACGTTTACATGTAACCAATGTAGTGAGAGGACGAAGAGGCTCATCAATCGATTAGCTTATGAACGGGGGCTTGTTTTTGTTCAGGTACACCATTACATTTCAATGTTCTATTGTGATGAATGCTACGATCGATTTTGGAATTCTATCAAAGCATTTGATATGATGAACCATTTTGTATTAGCAATTCGAGTAAGCCAATCATTGTTCTTTCTTTTGCTTCAAACAATTGTGTGGATTTGTTCTGACTGAAAATATTGCAATACTATGAAATTACACTCTGAAACCCCAAGCTTCTGCAAACTTTTTTCAAGTTTAAGTATACACCATTCTTTTTGACTGGACTGCTGTAAATAACTCCTCTTGAAATCCCAATTTCTACAACTCATGAAGGGTGGATGGTCAACTGTGCATAGATATAGTTTTTTGCTATAATTCAAAAACATTCTTAGAAAATTAGTATTCATATTTCTCCTTATATGTCTAGAATTTGCGGGAAGATATTTTCTGCTTGTCTCTCGCCCTCTCTGTCTCTCTGTCTCTCTTTGAATTCTTATATAGAGTGAAGCAGCATCTTTCCGGTGGTTATAGAAATGTAACTACTTACAAAAAATGTCCCAATCATATCAAAGAAGAAATTAGAGAATATATGTCCAGGAAAAATGAACTGAAGGCTCAAAGAAATTTTGTACAATAAGTTGAAGATGTGGAACTCACTTTTGATGAGGAAGATGATGAGTTAAATTGTCCAAGGAAGAGGTCGTCATCAAGTCGAAGCCATAAAAAGATTGTTTAGGATCAGTTAAATCTTCTAGGCAGAAGCCAAAGAGTTCAGTAAATGCACAATCATAGTGAATGATGATGCTTATAAAAAAGAAATGAGGGAGCACGCATGTCTACCAGATGGTTTTATGATGCTGGAATACCCATAAATGCTTACAATTGTGATAGATTTGGTCCCATGATTGAAGCCAGATGGTTTCATGTTAGCAACGTCTAGCAAATTAGAATATATATTGTTGTTATGAGTTATGATAGAAACGAAATCGACAAGCAAAGAAAGCGTAAACATTAAAGAACGAGGCACCTGTGGAATTAGAGGGTTTATATATAACACCCCTTTAAACCTTAGTTCCAAAATCGTAAATTACATATAATTTATATACAATTTAGATTTCATAGCTGCAGACAACGAATTCAAGGTTTTGCAACATTTATAATGGCAAACTCTAACAAAGAAGGAAAAACAATGGGTCTAATATTTGAAGATGCTAAGCCAATTGTTTCTTCCCCGTCCCATATAGTGCTTAAGTTTAAGATAACAATAACAATAATAATTGTTTCTTGCAGTTCTGTAGGACCTTTTGATCTCTAAATCCTTGCGATAGTTGGTTGTTTTTATCGTAGTAAATGCTGTTCATTGTTTCTTAATTTGGGTGTTTGATGCTTCCAATTAATATTTTGTACAGTGTGCAGGGTGTCAAAAGTATCACAAATTGGTTGATAATCTTGGCCTTATAGTTGAATATGACTTTCGGGAGGAGAACATGGATGTGGACTCAAATTCAGATCAAGTTTGATGTCGTTCAATGATGTCATTTCCTTTTACGACTTTCACTTTGAATCGGCCCCACAACTTTCTTGAAAATTCATGCAGAAGGCTGATTCCCTCTTCTTTTTTCCTTATCCCTCCTGGTTCTTTGCAATCCCATCGATTCCTTCAGGGACAGATATATCACAGTTTGGCAGGAAAAATGGATTGTTATTTATAGCATTTGATCAGGGTAAATGTAAAGGTAGGCTTATATCTGCAGCTAGTCATGTTGATGTATAACTTTGAATCATATGCTTCAATGAGCTGATGATGATTATTAAAATATTCAGGTTGCAATTAGCAAGGAATTATCAGTTTACTCATTTCAAGGTCGATGTTTCAATCTCCAACTCTTGCAATTGATGAACTCTAGAAAAGGAATGATTGATTTACTACTTGCTCACTTATTGTTAGATACAAATCAACATATGCACTCTGATCATCTCATTTCCATTACAAACAGAACAATATGTGGAAAATGTTATGCATCTTGGTAATAAATTTTGATGG

mRNA sequence

GTCCAATTGAAATTAGCCAGTTACCTAATGATAACAATATTCTTCGATCAAGTGTCGTTTGTTAATTGGAGGCTGCAGGAAAACGACATGTCGGCTTTCTAGAGTATGAAGAGAGCAACAGGAGGGGCAGCTTACTGAATAAGCGACAACTGCATCCATGGCCGTGGCAAAGACTGTATTCTTCTCCTCTCCCGCGCTTCTTCACCAGTCCTTCAACTCTTGGGAGACTCGGCGACATCCATCTATCAACCCATTCAAACCTATAGTCTTTTCGCAAGCAAACCCTAGCAATGGCGTCTTCATTAGAAGTAGAAACTTCCCTACAGCACCAGTTACTCGGGAACGCGGAAATAAGGTGCTTACGGTTTCCAGATTGGTGGATGTTTATCCTGGAGACGACGATGAATCTGCACAGAGAAATTCAGATACGGGGGCAGCCATTGACATAAAGCTTCCAAGAAGAAGTTTGATGGTACACCATTACATTTCAATGTTCTATTGTGATGAATGCTACGATCGATTTTGGAATTCTATCAAAGCATTTGATATGATGAACCATTTTGTATTAGCAATTCGATGTGCAGGGTGTCAAAAGTATCACAAATTGGTTGATAATCTTGGCCTTATAGTTGAATATGACTTTCGGGAGGAGAACATGGATGTGGACTCAAATTCAGATCAAGTTTGATGTCGTTCAATGATGTCATTTCCTTTTACGACTTTCACTTTGAATCGGCCCCACAACTTTCTTGAAAATTCATGCAGAAGGCTGATTCCCTCTTCTTTTTTCCTTATCCCTCCTGGTTCTTTGCAATCCCATCGATTCCTTCAGGGACAGATATATCACAGTTTGGCAGGAAAAATGGATTGTTATTTATAGCATTTGATCAGGGTAAATGTAAAGGTAGGCTTATATCTGCAGCTAGTCATGTTGATGTATAACTTTGAATCATATGCTTCAATGAGCTGATGATGATTATTAAAATATTCAGGTTGCAATTAGCAAGGAATTATCAGTTTACTCATTTCAAGGTCGATGTTTCAATCTCCAACTCTTGCAATTGATGAACTCTAGAAAAGGAATGATTGATTTACTACTTGCTCACTTATTGTTAGATACAAATCAACATATGCACTCTGATCATCTCATTTCCATTACAAACAGAACAATATGTGGAAAATGTTATGCATCTTGGTAATAAATTTTGATGG

Coding sequence (CDS)

ATGGCCGTGGCAAAGACTGTATTCTTCTCCTCTCCCGCGCTTCTTCACCAGTCCTTCAACTCTTGGGAGACTCGGCGACATCCATCTATCAACCCATTCAAACCTATAGTCTTTTCGCAAGCAAACCCTAGCAATGGCGTCTTCATTAGAAGTAGAAACTTCCCTACAGCACCAGTTACTCGGGAACGCGGAAATAAGGTGCTTACGGTTTCCAGATTGGTGGATGTTTATCCTGGAGACGACGATGAATCTGCACAGAGAAATTCAGATACGGGGGCAGCCATTGACATAAAGCTTCCAAGAAGAAGTTTGATGGTACACCATTACATTTCAATGTTCTATTGTGATGAATGCTACGATCGATTTTGGAATTCTATCAAAGCATTTGATATGATGAACCATTTTGTATTAGCAATTCGATGTGCAGGGTGTCAAAAGTATCACAAATTGGTTGATAATCTTGGCCTTATAGTTGAATATGACTTTCGGGAGGAGAACATGGATGTGGACTCAAATTCAGATCAAGTTTGA

Protein sequence

MAVAKTVFFSSPALLHQSFNSWETRRHPSINPFKPIVFSQANPSNGVFIRSRNFPTAPVTRERGNKVLTVSRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDECYDRFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSNSDQV

Homology

[Close]

BLAST of Lsi04G003060 vs. ExPASy TrEMBL
Match: A0A5A7SVJ1 (Mitochondrial protein import protein ZIM17 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00560 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 6.1e-57
Identity = 123/176 (69.89%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 1   MAVAKTVFFSSPALLHQSFNSWETRRHPSINPFKPIVFSQANPSNGVFIRSRNFPTAPVT 60
           MA AKTV FSSP LLH  FN  +T  HPSIN FKPI+ S+ANPSNGVFIRSRNF TAPVT
Sbjct: 1   MAAAKTVIFSSPTLLHHCFNPSQTPPHPSINSFKPILSSKANPSNGVFIRSRNFCTAPVT 60

Query: 61  RERGNKVLTVSRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDECYD 120
           R R  KVLTVS LVD Y GDDDES+QRNSDTGAAIDIKLPRRSLMV      F C++C +
Sbjct: 61  RGRRYKVLTVSSLVDGYTGDDDESSQRNSDTGAAIDIKLPRRSLMV-----TFTCNQCSE 120

Query: 121 RFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSNSDQV 177
           R    I         V  ++CAGCQKYHKLVDNLGLIVEYDFREE+ D+DSNSDQV
Sbjct: 121 RTKRLINRLAYERGLVF-VQCAGCQKYHKLVDNLGLIVEYDFREEDTDLDSNSDQV 170

[Close]

BLAST of Lsi04G003060 vs. ExPASy TrEMBL
Match: A0A1S3BG31 (uncharacterized protein C24H6.02c isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489232 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 6.1e-57
Identity = 123/176 (69.89%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 1   MAVAKTVFFSSPALLHQSFNSWETRRHPSINPFKPIVFSQANPSNGVFIRSRNFPTAPVT 60
           MA AKTV FSSP LLH  FN  +T  HPSIN FKPI+ S+ANPSNGVFIRSRNF TAPVT
Sbjct: 1   MAAAKTVIFSSPTLLHHCFNPSQTPPHPSINSFKPILSSKANPSNGVFIRSRNFCTAPVT 60

Query: 61  RERGNKVLTVSRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDECYD 120
           R R  KVLTVS LVD Y GDDDES+QRNSDTGAAIDIKLPRRSLMV      F C++C +
Sbjct: 61  RGRRYKVLTVSSLVDGYTGDDDESSQRNSDTGAAIDIKLPRRSLMV-----TFTCNQCSE 120

Query: 121 RFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSNSDQV 177
           R    I         V  ++CAGCQKYHKLVDNLGLIVEYDFREE+ D+DSNSDQV
Sbjct: 121 RTKRLINRLAYERGLVF-VQCAGCQKYHKLVDNLGLIVEYDFREEDTDLDSNSDQV 170

[Close]

BLAST of Lsi04G003060 vs. ExPASy TrEMBL
Match: A0A6J1GZ90 (uncharacterized protein LOC111458229 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458229 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 5.2e-56
Identity = 123/176 (69.89%), Postives = 135/176 (76.70%), Query Frame = 0


Query: 1   MAVAKTVFFSSPALLHQSFNSWETRRHPSINPFKPIVFSQANPSNGVFIRSRNFPTAPVT 60
           MA AKT  FSSPALL QSFN  +TR HPSIN F+PIV S+ANPSNG FIRSR F TAPVT
Sbjct: 1   MAAAKTQCFSSPALLQQSFNPSQTRPHPSINAFRPIVSSKANPSNGFFIRSRCFRTAPVT 60

Query: 61  RERGNKVLTVSRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDECYD 120
           RE  NKVLTVSRLVD   GDDDESAQRNSDTGAAIDIKLPRRSL+V      F C++C D
Sbjct: 61  RENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLV-----TFTCNQCGD 120

Query: 121 RFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSNSDQV 177
           R    I         V  ++CAGC KYHKLVDNLGLIVEYDFRE+++DV+SNSDQV
Sbjct: 121 RTKRLINRLAYERGLVF-VQCAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV 170

[Close]

BLAST of Lsi04G003060 vs. ExPASy TrEMBL
Match: A0A0A0KR03 (DNL-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608180 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.1e-55
Identity = 121/176 (68.75%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 1   MAVAKTVFFSSPALLHQSFNSWETRRHPSINPFKPIVFSQANPSNGVFIRSRNFPTAPVT 60
           MA A TV FSSP LL  SFN  +TR HPSI  FKPIV S+ANPSNGVFIRSRNF TAPV+
Sbjct: 4   MAAAYTVIFSSPTLLQHSFNPSQTRPHPSITSFKPIVSSKANPSNGVFIRSRNFCTAPVS 63

Query: 61  RERGNKVLTVSRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDECYD 120
           RER  KVLTVS LVD Y GDDDE +QRNSDTGAAIDIKLPRRSLMV      F C++C +
Sbjct: 64  RERRYKVLTVSSLVDGYTGDDDEPSQRNSDTGAAIDIKLPRRSLMV-----TFTCNQCSE 123

Query: 121 RFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSNSDQV 177
           R    I         V  ++CAGCQKYHKLVDNLGLIVEYDFREE++D+DS+SDQV
Sbjct: 124 RTKRLINRLAYERGLVF-VQCAGCQKYHKLVDNLGLIVEYDFREEDVDLDSSSDQV 173

[Close]

BLAST of Lsi04G003060 vs. ExPASy TrEMBL
Match: A0A6J1J9C7 (DNL-type zinc finger protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484608 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.7e-55
Identity = 120/176 (68.18%), Postives = 135/176 (76.70%), Query Frame = 0


Query: 1   MAVAKTVFFSSPALLHQSFNSWETRRHPSINPFKPIVFSQANPSNGVFIRSRNFPTAPVT 60
           MA AKT+ FSSPALL QSFN  +TR HPSI  F+PIV S+ANPSNG FI SR+F TAPVT
Sbjct: 1   MAAAKTLCFSSPALLQQSFNPSQTRPHPSIKAFRPIVSSKANPSNGFFISSRSFRTAPVT 60

Query: 61  RERGNKVLTVSRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDECYD 120
           RE  NKVLTVSRLVD   GDDDESAQRNSDTGAAIDIKLPRRSL+V      F C++C D
Sbjct: 61  RENRNKVLTVSRLVDGDSGDDDESAQRNSDTGAAIDIKLPRRSLLV-----TFTCNQCGD 120

Query: 121 RFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSNSDQV 177
           R    I         V  ++CAGC KYHKLVDNLGLIVEYDFR++++DV+SNSDQV
Sbjct: 121 RTKRLINRLAYERGLVF-VQCAGCLKYHKLVDNLGLIVEYDFRDDDVDVNSNSDQV 170

[Close]

BLAST of Lsi04G003060 vs. NCBI nr
Match: XP_038891803.1 (uncharacterized protein C24H6.02c [Benincasa hispida])

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-60
Identity = 129/176 (73.30%), Postives = 139/176 (78.98%), Query Frame = 0


Query: 1   MAVAKTVFFSSPALLHQSFNSWETRRHPSINPFKPIVFSQANPSNGVFIRSRNFPTAPVT 60
           MA AKTV+FSSPALLH SFNS ETR   SIN FK I+FS+ANPSNGVFIRSRNF T PVT
Sbjct: 1   MAAAKTVYFSSPALLHHSFNSSETRPLSSINSFKSILFSKANPSNGVFIRSRNFRTVPVT 60

Query: 61  RERGNKVLTVSRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDECYD 120
           RER  KVLTVSRLVD YPGDDDESAQRNSDT AAIDIKLPRRSLMV      F C++C +
Sbjct: 61  RERRYKVLTVSRLVDGYPGDDDESAQRNSDTAAAIDIKLPRRSLMV-----TFTCNQCSE 120

Query: 121 RFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSNSDQV 177
           R    I         V  ++CAGCQKYHKLVDNLGLIVEYDFREE+MD+DSNSDQV
Sbjct: 121 RTKRLINRLAYERGLVF-VQCAGCQKYHKLVDNLGLIVEYDFREEDMDMDSNSDQV 170

[Close]

BLAST of Lsi04G003060 vs. NCBI nr
Match: XP_008446529.1 (PREDICTED: uncharacterized protein C24H6.02c isoform X1 [Cucumis melo] >KAA0034513.1 mitochondrial protein import protein ZIM17 isoform X2 [Cucumis melo var. makuwa] >TYK09067.1 mitochondrial protein import protein ZIM17 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 1.3e-56
Identity = 123/176 (69.89%), Postives = 134/176 (76.14%), Query Frame = 0


Query: 1   MAVAKTVFFSSPALLHQSFNSWETRRHPSINPFKPIVFSQANPSNGVFIRSRNFPTAPVT 60
           MA AKTV FSSP LLH  FN  +T  HPSIN FKPI+ S+ANPSNGVFIRSRNF TAPVT
Sbjct: 1   MAAAKTVIFSSPTLLHHCFNPSQTPPHPSINSFKPILSSKANPSNGVFIRSRNFCTAPVT 60

Query: 61  RERGNKVLTVSRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDECYD 120
           R R  KVLTVS LVD Y GDDDES+QRNSDTGAAIDIKLPRRSLMV      F C++C +
Sbjct: 61  RGRRYKVLTVSSLVDGYTGDDDESSQRNSDTGAAIDIKLPRRSLMV-----TFTCNQCSE 120

Query: 121 RFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSNSDQV 177
           R    I         V  ++CAGCQKYHKLVDNLGLIVEYDFREE+ D+DSNSDQV
Sbjct: 121 RTKRLINRLAYERGLVF-VQCAGCQKYHKLVDNLGLIVEYDFREEDTDLDSNSDQV 170

[Close]

BLAST of Lsi04G003060 vs. NCBI nr
Match: KAG7032119.1 (DNL-type zinc finger protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.4 bits (581), Expect = 4.8e-56
Identity = 123/176 (69.89%), Postives = 136/176 (77.27%), Query Frame = 0


Query: 1   MAVAKTVFFSSPALLHQSFNSWETRRHPSINPFKPIVFSQANPSNGVFIRSRNFPTAPVT 60
           MA AKT+ FSSPALL QSFN  +TR HPSIN F+PIV S+ANPSNG FIRSR F TAPVT
Sbjct: 1   MAAAKTLCFSSPALLQQSFNPSQTRPHPSINAFRPIVSSKANPSNGFFIRSRCFRTAPVT 60

Query: 61  RERGNKVLTVSRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDECYD 120
           RE  NKVLTVSRLVD   GDDDESAQRNSDTGAAIDIKLPRRSL+V      F C++C D
Sbjct: 61  RENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLV-----TFTCNQCGD 120

Query: 121 RFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSNSDQV 177
           R    I         V  ++CAGC KYHKLVDNLGLIVEYDFRE+++DV+SNSDQV
Sbjct: 121 RTKRLINRLAYERGLVF-VQCAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV 170

[Close]

BLAST of Lsi04G003060 vs. NCBI nr
Match: KAG6601335.1 (DNL-type zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.0 bits (580), Expect = 6.2e-56
Identity = 122/176 (69.32%), Postives = 137/176 (77.84%), Query Frame = 0


Query: 1   MAVAKTVFFSSPALLHQSFNSWETRRHPSINPFKPIVFSQANPSNGVFIRSRNFPTAPVT 60
           MA AKT++FSSPALL QSFNS +TR HPSI  F+PIV S+ANPSN  FIRSR+F TAPVT
Sbjct: 1   MAAAKTLWFSSPALLQQSFNSSQTRPHPSIKAFRPIVSSKANPSNDFFIRSRSFRTAPVT 60

Query: 61  RERGNKVLTVSRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDECYD 120
           RE  NKVLTVSRLVD   GDDDESAQRNSDTGAAIDIKLPRRSL+V      F C++C D
Sbjct: 61  RENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLV-----TFTCNQCGD 120

Query: 121 RFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSNSDQV 177
           R    I         V  ++CAGC KYHKLVDNLGLIVEYDFRE+++DV+SNSDQV
Sbjct: 121 RTKRLINRLAYERGLVF-VQCAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV 170

[Close]

BLAST of Lsi04G003060 vs. NCBI nr
Match: XP_022956509.1 (uncharacterized protein LOC111458229 isoform X1 [Cucurbita moschata])

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 123/176 (69.89%), Postives = 135/176 (76.70%), Query Frame = 0


Query: 1   MAVAKTVFFSSPALLHQSFNSWETRRHPSINPFKPIVFSQANPSNGVFIRSRNFPTAPVT 60
           MA AKT  FSSPALL QSFN  +TR HPSIN F+PIV S+ANPSNG FIRSR F TAPVT
Sbjct: 1   MAAAKTQCFSSPALLQQSFNPSQTRPHPSINAFRPIVSSKANPSNGFFIRSRCFRTAPVT 60

Query: 61  RERGNKVLTVSRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDECYD 120
           RE  NKVLTVSRLVD   GDDDESAQRNSDTGAAIDIKLPRRSL+V      F C++C D
Sbjct: 61  RENRNKVLTVSRLVDGNSGDDDESAQRNSDTGAAIDIKLPRRSLLV-----TFTCNQCGD 120

Query: 121 RFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSNSDQV 177
           R    I         V  ++CAGC KYHKLVDNLGLIVEYDFRE+++DV+SNSDQV
Sbjct: 121 RTKRLINRLAYERGLVF-VQCAGCLKYHKLVDNLGLIVEYDFREDDVDVNSNSDQV 170

[Close]

BLAST of Lsi04G003060 vs. TAIR 10
Match: AT1G68730.1 (Zim17-type zinc finger protein )

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-16
Identity = 62/175 (35.43%), Postives = 90/175 (51.43%), Query Frame = 0


Query: 3   VAKTVFFSSPAL--LHQSFNSWETRRHPSINPFKP--IVFSQANPSNGVFIRSRNFPTAP 62
           +A T    SP L  ++   N+     H S + +KP    + Q NP + +           
Sbjct: 1   MANTAAGWSPVLAPIYSPVNTKPINFHFSASFYKPPRPFYKQQNPISALHRSKTTRVIEV 60

Query: 63  VTRERGNKVLTV-SRLVDVYPGDDDESAQRNSDTGAAIDIKLPRRSLMVHHYISMFYCDE 122
           VT ++ N+  +V   L D    + DE +  +++  A+IDIKLPRRSL V      F C+ 
Sbjct: 61  VTPKQRNRSFSVFGSLADDSKLNPDEESNDSAEV-ASIDIKLPRRSLQVE-----FTCNS 120

Query: 123 CYDRFWNSIKAFDMMNHFVLAIRCAGCQKYHKLVDNLGLIVEYDFREENMDVDSN 173
           C +R    I         V  ++CAGC K+HKLVDNLGLIVEYDFRE + D+ ++
Sbjct: 121 CGERTKRLINRHAYEKGLVF-VQCAGCLKHHKLVDNLGLIVEYDFRETSKDLGTD 168

The following BLAST results are available for this feature:

BLAST of Lsi04G003060 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G003060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVJ1	6.1e-57	69.89	Mitochondrial protein import protein ZIM17 isoform X2 OS=Cucumis melo var. makuw...	[more]
A0A1S3BG31	6.1e-57	69.89	uncharacterized protein C24H6.02c isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A6J1GZ90	5.2e-56	69.89	uncharacterized protein LOC111458229 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0KR03	1.1e-55	68.75	DNL-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608180 PE...	[more]
A0A6J1J9C7	5.7e-55	68.18	DNL-type zinc finger protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484...	[more]

BLAST of Lsi04G003060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891803.1	5.5e-60	73.30	uncharacterized protein C24H6.02c [Benincasa hispida]	[more]
XP_008446529.1	1.3e-56	69.89	PREDICTED: uncharacterized protein C24H6.02c isoform X1 [Cucumis melo] >KAA00345...	[more]
KAG7032119.1	4.8e-56	69.89	DNL-type zinc finger protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6601335.1	6.2e-56	69.32	DNL-type zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022956509.1	1.1e-55	69.89	uncharacterized protein LOC111458229 isoform X1 [Cucurbita moschata]	[more]

BLAST of Lsi04G003060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68730.1	3.0e-16	35.43	Zim17-type zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007853	Zinc finger, DNL-type	PFAM	PF05180	zf-DNL	coord: 112..159 e-value: 4.8E-5 score: 23.2
IPR007853	Zinc finger, DNL-type	PROSITE	PS51501	ZF_DNL	coord: 104..176 score: 9.679258
IPR024158	Mitochondrial import protein TIM15	PANTHER	PTHR20922	UNCHARACTERIZED	coord: 21..175
None	No IPR available	PANTHER	PTHR20922:SF19	F24J5.3	coord: 21..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G003060.1	Lsi04G003060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0030150	protein import into mitochondrial matrix
biological_process	GO:0050821	protein stabilization
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0008270	zinc ion binding