Lsi04G003000 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G003000
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Piriformospora indica-insensitive protein 2-like
Location	chr04: 3034259 .. 3034579 (+)
RNA-Seq Expression	Lsi04G003000
Synteny	Lsi04G003000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTCCAATGCAAACGCAACCCCATCGCCATTTTCATCTTTCTTCTTCTTCTTCTTCTTCTTCTTTCTGGGTTTTCCTCTGCCACTCGCCCAGGTAAAACGATGGAACATCATGGGAACAATCCCGACATGTCGAATTCTTATTTCAATTACATGACTGGCTTCCGATATGTCGGTCAAACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGCCACAACTCTGTAGTTGACTCTGTTCCTCCCAATTGA

mRNA sequence

ATGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTCCAATGCAAACGCAACCCCATCGCCATTTTCATCTTTCTTCTTCTTCTTCTTCTTCTTCTTTCTGGGTTTTCCTCTGCCACTCGCCCAGGTAAAACGATGGAACATCATGGGAACAATCCCGACATGTCGAATTCTTATTTCAATTACATGACTGGCTTCCGATATGTCGGTCAAACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGCCACAACTCTGTAGTTGACTCTGTTCCTCCCAATTGA

Coding sequence (CDS)

ATGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTCCAATGCAAACGCAACCCCATCGCCATTTTCATCTTTCTTCTTCTTCTTCTTCTTCTTCTTTCTGGGTTTTCCTCTGCCACTCGCCCAGGTAAAACGATGGAACATCATGGGAACAATCCCGACATGTCGAATTCTTATTTCAATTACATGACTGGCTTCCGATATGTCGGTCAAACCTTCAGCTTTCTTCCCAGAGGCGTTCCGATTCCTCCTTCCGGCCCTTCCGACCGCCACAACTCTGTAGTTGACTCTGTTCCTCCCAATTGA

Protein sequence

MPSSSSSSSSSSSSSSSFQCKRNPIAIFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN

Homology

[Close]

BLAST of Lsi04G003000 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.1e-05
Identity = 35/86 (40.70%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 24  PIAIFIFLLLLLLLLSGFSS---ATRPGKTMEHHGNNPDMS--NSYFNYMTGFRYVGQTF 83
           P    + LL  +L L+  SS   A R G TME   N   ++  NS+             F
Sbjct: 3   PCRTMMVLLCFVLFLAASSSCVAAARIGATMEMKKNIKRLTFKNSHI------------F 62

Query: 84  SFLPRGVPIPPSGPSDRHNSVVDSVP 105
            +LP+GVPIPPS PS RHNS V+S+P
Sbjct: 63  GYLPKGVPIPPSAPSKRHNSFVNSLP 76

[Close]

BLAST of Lsi04G003000 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.2e-29
Identity = 83/106 (78.30%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MPSSSSSSSSSSSSSSSFQCKRNPIAIFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDM 60
           MPSSSSSSSSSSSSSSSFQ K+N I IFI   LLLLLLSGFSSATRPG TME     PDM
Sbjct: 1   MPSSSSSSSSSSSSSSSFQFKQNSIPIFI---LLLLLLSGFSSATRPGGTMEF----PDM 60

Query: 61  SNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 107
           SNS +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 61  SNSNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of Lsi04G003000 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.0e-27
Identity = 81/104 (77.88%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 3   SSSSSSSSSSSSSSSFQCKRNPIAIFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDMSN 62
           SSSSSSSSSSSSSSSFQ K+N I IFI   LLLLLLSGFSSATRPG TME     PDMSN
Sbjct: 7   SSSSSSSSSSSSSSSFQFKQNSIPIFI---LLLLLLSGFSSATRPGGTMEF----PDMSN 66

Query: 63  SYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 107
           S +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 67  SNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of Lsi04G003000 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.1e-24
Identity = 74/106 (69.81%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MPSSSSSSSSSSSSSSSFQCKRNPIAIFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDM 60
           MPSSSS +S               I IFI LLLLLLLLSG SSATRPGKTME    NPDM
Sbjct: 1   MPSSSSQTS---------------IPIFI-LLLLLLLLSGLSSATRPGKTMEFTEMNPDM 60

Query: 61  SNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 107
           SNS   Y T FRY GQTFSFLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 61  SNS---YKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Lsi04G003000 vs. ExPASy TrEMBL
Match: A0A7J9EIZ4 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_008314 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 15  SSSFQCKRNPIAIFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDMSNSYF--NYMTGFR 74
           S    C R  ++  I+++ L+ LL+G S ATRPGKT+     +  +S + F   Y TGFR
Sbjct: 13  SKKISCTRQQLSNIIYVVFLITLLAGSSFATRPGKTII---VDETVSMTVFPRKYETGFR 72

Query: 75  YVGQTFSFLPRGVPIPPSGPSDRHNSVVDS 103
           Y GQ F+F P+G+PIPPSGPS RHNSVVDS
Sbjct: 73  YQGQMFNFFPKGIPIPPSGPSKRHNSVVDS 99

[Close]

BLAST of Lsi04G003000 vs. ExPASy TrEMBL
Match: A0A5D2EBI1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G197000v1 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.5e-13
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 15  SSSFQCKRNPIAIFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDMSNSYFNYMTGFRYV 74
           S    C R  ++  I+++ L+ LL+G S ATRPGKT+    +   M+     Y TGFRY 
Sbjct: 13  SKKISCTRQQLSNIIYVVFLITLLAGSSFATRPGKTI-IVDDTVSMTVFPRKYETGFRYQ 72

Query: 75  GQTFSFLPRGVPIPPSGPSDRHNSVVDS 103
           GQ F+F P+G+PIPPSGPS RHNSVVDS
Sbjct: 73  GQMFNFFPKGIPIPPSGPSKRHNSVVDS 99

[Close]

BLAST of Lsi04G003000 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 6.7e-29
Identity = 83/106 (78.30%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 1   MPSSSSSSSSSSSSSSSFQCKRNPIAIFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDM 60
           MPSSSSSSSSSSSSSSSFQ K+N I IFI   LLLLLLSGFSSATRPG TME     PDM
Sbjct: 1   MPSSSSSSSSSSSSSSSFQFKQNSIPIFI---LLLLLLSGFSSATRPGGTMEF----PDM 60

Query: 61  SNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 107
           SNS +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 61  SNSNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of Lsi04G003000 vs. NCBI nr
Match: TYK09072.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 81/104 (77.88%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 3   SSSSSSSSSSSSSSSFQCKRNPIAIFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDMSN 62
           SSSSSSSSSSSSSSSFQ K+N I IFI   LLLLLLSGFSSATRPG TME     PDMSN
Sbjct: 7   SSSSSSSSSSSSSSSFQFKQNSIPIFI---LLLLLLSGFSSATRPGGTMEF----PDMSN 66

Query: 63  SYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 107
           S +   T FRY GQTF FLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 67  SNYK-TTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of Lsi04G003000 vs. NCBI nr
Match: KAG6601330.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 76/103 (73.79%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 4   SSSSSSSSSSSSSSFQCKRNPIAIFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDMSNS 63
           SSSSSSSSSSSSSS        AIF+   LLLLL+SGF SATRPGKTM H    PD+SN 
Sbjct: 3   SSSSSSSSSSSSSSLS------AIFV---LLLLLVSGFCSATRPGKTMGHE-LKPDLSN- 62

Query: 64  YFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 107
            FNY TGFRYVGQTFS+LPRGVPIPPSGPSDRHNS+VDS+PP+
Sbjct: 63  -FNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS 93

[Close]

BLAST of Lsi04G003000 vs. NCBI nr
Match: KGN52035.1 (hypothetical protein Csa_008746 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23
Identity = 74/106 (69.81%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MPSSSSSSSSSSSSSSSFQCKRNPIAIFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDM 60
           MPSSSS +S               I IFI LLLLLLLLSG SSATRPGKTME    NPDM
Sbjct: 1   MPSSSSQTS---------------IPIFI-LLLLLLLLSGLSSATRPGKTMEFTEMNPDM 60

Query: 61  SNSYFNYMTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 107
           SNS   Y T FRY GQTFSFLP+GVPIPPSGPSDRHNSVVDS+PPN
Sbjct: 61  SNS---YKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Lsi04G003000 vs. NCBI nr
Match: KAG7032113.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.9 bits (294), Expect = 5.5e-23
Identity = 70/98 (71.43%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 9   SSSSSSSSSFQCKRNPIAIFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDMSNSYFNYM 68
           SSSSSSSSS        AIF+   LLLLL+SGF SATRPGKTM H    PD+ N  FNY 
Sbjct: 3   SSSSSSSSSLS------AIFV---LLLLLVSGFCSATRPGKTMGHE-LKPDLLN--FNYK 62

Query: 69  TGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVVDSVPPN 107
           TGFRYVGQTFS+LPRGVPIPPSGPSDRHNS+VDS+PP+
Sbjct: 63  TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS 88

[Close]

BLAST of Lsi04G003000 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 35/86 (40.70%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 24  PIAIFIFLLLLLLLLSGFSS---ATRPGKTMEHHGNNPDMS--NSYFNYMTGFRYVGQTF 83
           P    + LL  +L L+  SS   A R G TME   N   ++  NS+             F
Sbjct: 3   PCRTMMVLLCFVLFLAASSSCVAAARIGATMEMKKNIKRLTFKNSHI------------F 62

Query: 84  SFLPRGVPIPPSGPSDRHNSVVDSVP 105
            +LP+GVPIPPS PS RHNS V+S+P
Sbjct: 63  GYLPKGVPIPPSAPSKRHNSFVNSLP 76

[Close]

BLAST of Lsi04G003000 vs. TAIR 10
Match: AT3G25655.1 (inflorescence deficient in abscission (IDA)-like 1 )

HSP 1 Score: 41.6 bits (96), Expect = 4.6e-04
Identity = 25/77 (32.47%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 27  IFIFLLLLLLLLSGFSSATRPGKTMEHHGNNPDMSNSYFNYMTGFRYVGQTFSFLPRGVP 86
           +F+ L ++ LL+ G  +AT     ++        + S    + GF + G+ F    + V 
Sbjct: 8   MFMTLYIVFLLIFGSYNATARIGPIKLSETEIVQTRSRQEIIGGFTFKGRVFHSFSKRVL 67

Query: 87  IPPSGPSDRHNSVVDSV 104
           +PPSGPS RHNSVV+++
Sbjct: 68  VPPSGPSMRHNSVVNNL 84

The following BLAST results are available for this feature:

BLAST of Lsi04G003000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAD7	3.1e-05	40.70	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of Lsi04G003000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SV51	3.2e-29	78.30	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3CCP4	1.0e-27	77.88	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0KR07	9.1e-24	69.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]
A0A7J9EIZ4	1.5e-13	51.11	Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_008314 PE=4 SV=1	[more]
A0A5D2EBI1	2.5e-13	51.14	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G197000v1 PE=...	[more]

BLAST of Lsi04G003000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034518.1	6.7e-29	78.30	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
TYK09072.1	2.1e-27	77.88	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
KAG6601330.1	1.0e-24	73.79	Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KGN52035.1	1.9e-23	69.81	hypothetical protein Csa_008746 [Cucumis sativus]	[more]
KAG7032113.1	5.5e-23	71.43	Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lsi04G003000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68765.1	2.2e-06	40.70	Putative membrane lipoprotein	[more]
AT3G25655.1	4.6e-04	32.47	inflorescence deficient in abscission (IDA)-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..106
None	No IPR available	PANTHER	PTHR33599:SF18	PROTEIN IDA	coord: 13..106
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 13..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G003000.1	Lsi04G003000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0005615	extracellular space