Lsi04G002760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G002760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr04: 2794574 .. 2795929 (-)
RNA-Seq Expression	Lsi04G002760
Synteny	Lsi04G002760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATACAGAACACCGGCTCCAATTGAAGGGACATCGTTACGTCAGTTTGGGTAGAGTTCCTTCTTCTCTTCGTTTCGCGCCGTAAGAAAGAAAGCAAAACAGAAGCTCCTCTACTGAAATGGCGTAATTATCATCTTCCAACAGACATGAACAAGAAGTTTGACAAGCTAGCTAGAGCACTTGAGTGAAAGTCAATTGAATTTGACTCCACATTTTGGGCACTCACGAACGATTTGCCATTTGGATAACCAACTTAATGCTAATGCTTTTGAATTCAAAATCATTGTCCGGCAATCCCACATACAGACAGCTTTGCGCACAATTGGTATGTCAGGTTTGACCCTTGAAGCTGGGATTTACAACCACACATATAATGAAAGACTTAAAATATCTATCATTCCTTCGTGAATATCTGTCTGTCTTGATTGGAAATCTGCAATGTATGAATCTTAATAGAACAAATTTAATGGGGGATAAAGAATATTTAATGGTGGGGTTTTCTTTTTCCTTCTTAGGTGAGGCGTGTACAAGGTGTTTGATAAAAGTCCTAAAAGAAAGAAGCTCTACTAGAACGATTATGGGTACCGAAGTTCTTTCTGGGGGGCAACAATTGTGATGGCTGGTGCATGTTCAGCAACAGTTCTTATAGCGTGTTGGCCGTGGTGGCTGCGCAATAGACGCGACATTGGTATTAATTATGTTCCAGGTAATTTCTTTTCTTTTTCTAAATTTTTAAAGCGTTTAAAGATGCAATAAGAGTCTAAAAGTTACGATGAATTGAAGTCAGACAAGCAACATGACATGTTTCTCTTGTGCTTGAACTTTAAGCACACATTAATGATGGAGCTTTCCAATGGGGGTGGCAGTAGGCCATAACAACCCACCAATCCGAGAATACACACCACTGCTAGGTAAGTCAGACTTTGCTTTTCAGACAAAGCGCATTCAAAGTGAGCCATTTCAAAAAGTCGTAAGTGGGACTGGAAAAGCATTGCATTCTAGAACTGTAGGCCTCACTTTATTATTTACATCTTTTCACACCATCTTTTTTATCTTTGCATTATTAATTAGTATACGTATATATTTTTTTTTCTGTTATCGTAATTTGAATACAGCATATACTAAAACATGTGAATCTCACCTTTTATACATCATTCCTACAAAATAAAGGAGAAAAAGTAGAGAAGTCCTTGCTCTAGCTTATTGTGCTTGAATCAATGTAATGTCAAAACATGTGGCACTCAGCCAATTGCCCACTTGGCAGGAAAAGAAAGGATAATATCCCTCCCAGCCTCCAACTTGATAGAATAGCTGTCCACGTCATACCGCGAGACATCTTTTCATCATCTATATAA

mRNA sequence

TTCATACAGAACACCGGCTCCAATTGAAGGGACATCGTTACGTCAGTTTGGGTAGAGTTCCTTCTTCTCTTCGTTTCGCGCCGTAAGAAAGAAAGCAAAACAGAAGCTCCTCTACTGAAATGGCGTAATTATCATCTTCCAACAGACATGAACAAGAAGTTTGACAAGCTAGCTAGAGCACTTGAGTGAAAGTCAATTGAATTTGACTCCACATTTTGGGCACTCACGAACGATTTGCCATTTGGATAACCAACTTAATGCTAATGCTTTTGAATTCAAAATCATTGTCCGGCAATCCCACATACAGACAGCTTTGCGCACAATTGGTGAGGCGTGTACAAGGTGTTTGATAAAAGTCCTAAAAGAAAGAAGCTCTACTAGAACGATTATGGGTACCGAAGTTCTTTCTGGGGGGCAACAATTGTGATGGCTGGTGCATGTTCAGCAACAGTTCTTATAGCGTGTTGGCCGTGGTGGCTGCGCAATAGACGCGACATTGGTATTAATTATGTTCCAGCCAATTGCCCACTTGGCAGGAAAAGAAAGGATAATATCCCTCCCAGCCTCCAACTTGATAGAATAGCTGTCCACGTCATACCGCGAGACATCTTTTCATCATCTATATAA

Coding sequence (CDS)

ATGGCTGGTGCATGTTCAGCAACAGTTCTTATAGCGTGTTGGCCGTGGTGGCTGCGCAATAGACGCGACATTGGTATTAATTATGTTCCAGCCAATTGCCCACTTGGCAGGAAAAGAAAGGATAATATCCCTCCCAGCCTCCAACTTGATAGAATAGCTGTCCACGTCATACCGCGAGACATCTTTTCATCATCTATATAA

Protein sequence

MAGACSATVLIACWPWWLRNRRDIGINYVPANCPLGRKRKDNIPPSLQLDRIAVHVIPRDIFSSSI

Homology

[Close]

BLAST of Lsi04G002760 vs. ExPASy TrEMBL
Match: A0A0A0KWE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608490 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-18
Identity = 56/88 (63.64%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 1  MAGACSATVLIACWPWWLRNRRD-IGIN-------------------YVP--ANCPLGRK 60
          MAGACS TVLIACWPWWL NR D   IN                   Y P  ANCPLGRK
Sbjct: 1  MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK 60

Query: 61 RKDNIPPSLQLDRIAVHVIPRDIFSSSI 67
          RK NIPP  QLDRI VHVIPRDIFSSSI
Sbjct: 61 RKGNIPPVPQLDRIPVHVIPRDIFSSSI 88

[Close]

BLAST of Lsi04G002760 vs. NCBI nr
Match: KGN52061.1 (hypothetical protein Csa_009175 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 7.4e-18
Identity = 56/88 (63.64%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 1  MAGACSATVLIACWPWWLRNRRD-IGIN-------------------YVP--ANCPLGRK 60
          MAGACS TVLIACWPWWL NR D   IN                   Y P  ANCPLGRK
Sbjct: 1  MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK 60

Query: 61 RKDNIPPSLQLDRIAVHVIPRDIFSSSI 67
          RK NIPP  QLDRI VHVIPRDIFSSSI
Sbjct: 61 RKGNIPPVPQLDRIPVHVIPRDIFSSSI 88

The following BLAST results are available for this feature:

BLAST of Lsi04G002760 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G002760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWE1	3.6e-18	63.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608490 PE=4 SV=1	[more]

BLAST of Lsi04G002760 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52061.1	7.4e-18	63.64	hypothetical protein Csa_009175 [Cucumis sativus]	[more]

BLAST of Lsi04G002760 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G002760.1	Lsi04G002760.1	mRNA