Lsi04G002740 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G002740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr04: 2791309 .. 2795353 (+)
RNA-Seq Expression	Lsi04G002740
Synteny	Lsi04G002740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTGGGCTCTTCGAGGCTCTTCAAATGTTGGTGATAGAAGAGGAGAGAAGGGAGAAAAAGAGTGAAGAAAATATGTGAGAGGTGAGAGATATGACATGTGGGAAGAAGTTTGGAAATGAAGGTTCATTCTACAAGTGGCATTGCCCTTGGGATGAGATTAATCTTCTTCCCAGCCGTTGTTTTTGTATTCTGTTTTCTCTTTCTAGAATATATTTCAAATTTCAAATTCTTTATTGCTTAGATGAACAAGGACAAATGAAGCACTTTATGTCCAATTTTTCATATTTTTCTACTATTTATTTGTTTGCTAATTCTAAAACATTGATCTAATAGACATGTCATACCAACATTCTAGAGACAAACTCATAATTTAAAGATCGGAAACGTGGCAAGATGTATTTAAATTTTAGGAGTTAAATATATATAACCATAATAAGAATTAAATATATATAACCATCGAAATTCAGGAAATAAATTTATGATGTAATCTTATTAAAAATAATGGGGAAAAAAGAAAGAAAGAGAAGACATGACCTCTTACAATGGCTAATGCTACACAAGAAAAAGCAAGCGCCTTTTCACCAATGTGCAACATCAAAGACTAAAAGGGATAGGGGAATTTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCAACCAATATCCATTGTCATAAAGTTGGCACTTATCCTTTCAGGAAGTGAGGGCCCCAAGTTTGTCCTTAGTTTCACTTCATTATCACCCTTAGTGTCGCATCAGCCATCCACTAATGTAGAGTCAGTCCTCCTTCTCAAAGAGTAAGGTTTCTTTCCAGTTGTGCATCTAAAAGGGTGAGACGAAAAAAAGCAGAGACAATTTCATTGCTGCCTAAAAAGTTTGCTGCCCTAGAAGACAAGAGCTTAAGAAAAGTACAGAAGAGCTCAAAAACGGTGAGTGAAAATTTTGACCAATCACATTGATTCTTGACAGTGGAGTCTTATGTAATAAGATTGAGATGGCGGTTACTACGACAAGAAGAGCAGAAGAAGTGGGGCAATTATTCGAAACTTCTTTAGAATATTGTCTTTAACTGTAAGAGCTAATCCCTATCTTAACGGTTGGAATAACAAGTGTCTCAATTGATGATAGTCATGATCGAATCTAGTCCCTTGATTTGGTAAGTGCTTGAGTAACATGTTTCAATTTCCATGAGATGGCTACTTGGGACATCATGGTAGTTGATATGAGGAAGAGATGTATATTTAAGTCCAAGTCTAGGCATCTAAATTGATAAAAACATCCCTTGGAATAATTTTTTTTTTTCATCCAAGCAGTGGACACGTGGCTTAGATGCCACATGATGAAGAGAATTGGTAAAAGGACGACAAACAGAACTGAATTGGTCATCTGTTCTTAGCTAAAGCCTAAAGCTACAGTTCCAGTTTATTTCTTCCTGTGGGAACTGCATCTCACCGGTGGAGGGTCAACACGGAATGCAGCTTTACTATTTTCCTTTTGCTTTCCATCTTTGAAAAATTGCAAAGGTTTGTAAAGGGTACGAGTCAGAGAAGAGATATAATCTATATTCACATAGGACATTCCAAATTGCAAGCTTGAATAAGATTCCAACTTGTACAGTAATCTCTATTGAGGTATATAAATATTAAACGTAGTGATAAATCTGATAAGAATTCTCTCTCTTTTCTTTGAGGAAAAAACAAAAACTGAAAAAAGTCTTCTTTTTTGTACAAATTCTACTGAAGCTATGCACACAAGAAGTCCTTGATATGATCAATCATTTCAAGGGTCCGAGTTTGTGAGAGTTGTGACTTGTTCAGAACCTGAAACGCATGGCCAACTCCTTCATAAACCACATAATTGATCAGCTTACCGGCTCTATGTAAAGCAGAGCAAAACTCCAAGTTCCTATCTTTCAATATGTCCAATTCTGATATACATATCAAACTAGGCAAAACCCTCAAATCCTCCACCTTAAACAATCCTTTTGCCGAAGGATTGCACCATGGGTGGTCACGGTTTGTCCCGGAAGGCAATGCCAACCGCCAGTACGTATCAGAAACTGCCAACGTCAGTGGCGAACGAGGAGGTTGGACAAGAAACTTCTCTGACTTGGTCCTTGACTCTCCACCAAAAAATGGTTGTATCAAAATGTTACCTTTAACAACTAACGGCTTCAAGACCACAGCTCCAGAAGCAGTGGTCTTACCACCAAGTCCGGCGGCTACATTGAAGGCTATGTTGCCACCGGCACTATCACCACTAAGGTAGATTTTGGTAAAGTCGCAGTATCTTGACCACCAATTCTGCTTGGCCCCTACAAAAGCAACTTGTTTCAACCACTGAAGGGTCTTTAATCCATCTTCATAAGGAGCTGGAAGAGGGTTTTCTGGAGCCAAACGATAATTCACAGACATAATTATACAGTCGGCTTTTGCAGATAGCTTAGCCAGGAACTCATGGTAGCAACTCCAAGCGGCCGAGCCGACACAAAACCCACCTCCATGGAAATATACAATCAAAGGCAGCTTCTCCTGGCACTGTGTTGGAATATAGAAACGAGCCCAAATGTTGGTCAGTTTATCCACAACTACATCCCAAGAAGTAACACCGAGCTCTGGCGGCAATGCATTAGAGACACATGGAACTATTTGGGGTCTTTCCACATACCCATTTCCGTAAACTCTAATCAGGCCATCAATCTCCTCAACCAACACGTCATGTTGATTAAAGCCATTACCATGTTCTTCAAAACTTGGAATTTGATCTAGGTTAATGGTAGGCATTCTTTTTGTCCTCATAGAACAGGGATGGAGATGAGAGTCGATGCAGAAATTAAAGTCGGAGGCTTTTGAGAGTACAATTGATTATGGAACGAAGTATGAACTTCTGACGCTCCTTATATAGATGATGAAAAGATGTCTCGCGGTATGACGTGGACAGCTATTCTATCAAGTTGGAGGCTGGGAGGGATATTATCCTTTCTTTTCCTGCCAAGTGGGCAATTGGCTGAGTGCCACATGTTTTGACATTACATTGATTCAAGCACAATAAGCTAGAGCAAGGACTTCTCTACTTTTTCTCCTTTATTTTGTAGGAATGATGTATAAAAGGTGAGATTCACATGTTTTAGTATATGCTGTATTCAAATTACGATAACAGAAAAAAAAATATATACGTATACTAATTAATAATGCAAAGATAAAAAAGATGGTGTGAAAAGATGTAAATAATAAAGTGAGGCCTACAGTTCTAGAATGCAATGCTTTTCCAGTCCCACTTACGACTTTTTGAAATGGCTCACTTTGAATGCGCTTTGTCTGAAAAGCAAAGTCTGACTTACCTAGCAGTGGTGTGTATTCTCGGATTGGTGGGTTGTTATGGCCTACTGCCACCCCCATTGGAAAGCTCCATCATTAATGTGTGCTTAAAGTTCAAGCACAAGAGAAACATGTCATGTTGCTTGTCTGACTTCAATTCATCGTAACTTTTAGACTCTTATTGCATCTTTAAACGCTTTAAAAATTTAGAAAAAGAAAAGAAATTACCTGGAACATAATTAATACCAATGTCGCGTCTATTGCGCAGCCACCACGGCCAACACGCTATAAGAACTGTTGCTGAACATGCACCAGCCATCACAATTGTTGCCCCCCAGAAAGAACTTCGGTACCCATAA

mRNA sequence

ATGGAAGGAAGTGAGGGCCCCAAGTTTGTCCTTAGTTTCACTTCATTATCACCCTTAGTGTCGCATCAGCCATCCACTAATGTAGAGTCAGTCCTCCTTCTCAAAGATTGTGCATCTAAAAGGGTGAGACGAAAAAAAGCAGAGACAATTTCATTGCTGCCTAAAAAGTTTGCTGCCCTAGAAGACAAGAGCTTAAGAAAAGTACAGAAGAGCTCAAAAACGCTAAAGCCTAAAGCTACAGTTCCAGTTTATTTCTTCCTGTGGGAACTGCATCTCACCGGTGGAGGCTTACCGGCTCTATGTAAAGCAGAGCAAAACTCCAAGTTCCTATCTTTCAATATGTCCAATTCTGATATACATATCAAACTAGGCAAAACCCTCAAATCCTCCACCTTAAACAATCCTTTTGCCGAAGGATTGCACCATGGGTGGTCACGGTTTGTCCCGGAAGGCAATGCCAACCGCCAGTACGTATCAGAAACTGCCAACGTCAGTGGCGAACGAGGAGGTTGGACAAGAAACTTCTCTGACTTGGTCCTTGACTCTCCACCAAAAAATGGTTGTATCAAAATGTTACCTTTAACAACTAACGGCTTCAAGACCACAGCTCCAGAAGCAGTGGTCTTACCACCAAGTCCGGCGGCTACATTGAAGGCTATGTTGCCACCGGCACTATCACCACTAAGCCAGGAACTCATGGTAGCAACTCCAAGCGGCCGAGCCGACACAAAACCCACCTCCATGGAAATATACAATCAAAGGCAGCTTCTCCTGGCACTGTGTTGGAATATAGAAACGAGCCCAAATGTTGGTCAGTTTATCCACAACTACATCCCAAGAAGTAACACCGAGCTCTGGCGGCAATGCATTAGAGACACATGGAACTATTTGGGGTCTTTCCACATACCCATTTCCGTAAACTCTAATCAGGCCATCAATCTCCTCAACCAACACGTCATGTTGATTAAAGCCATTACCATCCACCACGGCCAACACGCTATAAGAACTGTTGCTGAACATGCACCAGCCATCACAATTGTTGCCCCCCAGAAAGAACTTCGGTACCCATAA

Coding sequence (CDS)

ATGGAAGGAAGTGAGGGCCCCAAGTTTGTCCTTAGTTTCACTTCATTATCACCCTTAGTGTCGCATCAGCCATCCACTAATGTAGAGTCAGTCCTCCTTCTCAAAGATTGTGCATCTAAAAGGGTGAGACGAAAAAAAGCAGAGACAATTTCATTGCTGCCTAAAAAGTTTGCTGCCCTAGAAGACAAGAGCTTAAGAAAAGTACAGAAGAGCTCAAAAACGCTAAAGCCTAAAGCTACAGTTCCAGTTTATTTCTTCCTGTGGGAACTGCATCTCACCGGTGGAGGCTTACCGGCTCTATGTAAAGCAGAGCAAAACTCCAAGTTCCTATCTTTCAATATGTCCAATTCTGATATACATATCAAACTAGGCAAAACCCTCAAATCCTCCACCTTAAACAATCCTTTTGCCGAAGGATTGCACCATGGGTGGTCACGGTTTGTCCCGGAAGGCAATGCCAACCGCCAGTACGTATCAGAAACTGCCAACGTCAGTGGCGAACGAGGAGGTTGGACAAGAAACTTCTCTGACTTGGTCCTTGACTCTCCACCAAAAAATGGTTGTATCAAAATGTTACCTTTAACAACTAACGGCTTCAAGACCACAGCTCCAGAAGCAGTGGTCTTACCACCAAGTCCGGCGGCTACATTGAAGGCTATGTTGCCACCGGCACTATCACCACTAAGCCAGGAACTCATGGTAGCAACTCCAAGCGGCCGAGCCGACACAAAACCCACCTCCATGGAAATATACAATCAAAGGCAGCTTCTCCTGGCACTGTGTTGGAATATAGAAACGAGCCCAAATGTTGGTCAGTTTATCCACAACTACATCCCAAGAAGTAACACCGAGCTCTGGCGGCAATGCATTAGAGACACATGGAACTATTTGGGGTCTTTCCACATACCCATTTCCGTAAACTCTAATCAGGCCATCAATCTCCTCAACCAACACGTCATGTTGATTAAAGCCATTACCATCCACCACGGCCAACACGCTATAAGAACTGTTGCTGAACATGCACCAGCCATCACAATTGTTGCCCCCCAGAAAGAACTTCGGTACCCATAA

Protein sequence

MEGSEGPKFVLSFTSLSPLVSHQPSTNVESVLLLKDCASKRVRRKKAETISLLPKKFAALEDKSLRKVQKSSKTLKPKATVPVYFFLWELHLTGGGLPALCKAEQNSKFLSFNMSNSDIHIKLGKTLKSSTLNNPFAEGLHHGWSRFVPEGNANRQYVSETANVSGERGGWTRNFSDLVLDSPPKNGCIKMLPLTTNGFKTTAPEAVVLPPSPAATLKAMLPPALSPLSQELMVATPSGRADTKPTSMEIYNQRQLLLALCWNIETSPNVGQFIHNYIPRSNTELWRQCIRDTWNYLGSFHIPISVNSNQAINLLNQHVMLIKAITIHHGQHAIRTVAEHAPAITIVAPQKELRYP

Homology

[Close]

BLAST of Lsi04G002740 vs. ExPASy TrEMBL
Match: A0A2P2QAQ7 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-04
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 248 MEIYNQRQ--LLLALC-WNIETSPNVGQFIHNYIPRSNTELWRQCIRDTWNYLGSFHIPI 307
           MEI+NQR+  ++  +C WNI+T PN+   +++Y+  S+ EL  Q   +T N LGSFH+ I
Sbjct: 1   MEIHNQRKPMVVTLICQWNIKTCPNICGLVNDYVLGSHPELRSQTCCNTRNNLGSFHVSI 60

Query: 308 SVNSN 310
            V+SN
Sbjct: 61  VVHSN 65

[Close]

BLAST of Lsi04G002740 vs. ExPASy TrEMBL
Match: A0A0A0KR51 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608510 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.2e-04
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  MEGSEGPKFVLSFTSLSPLVSHQPSTNVESVLLLKD 37
          + GSEGPKFVLSFTSLS L SHQ  TNVESV LLK+
Sbjct: 50 LSGSEGPKFVLSFTSLSSLASHQQPTNVESVPLLKE 85

[Close]

BLAST of Lsi04G002740 vs. NCBI nr
Match: CAB3501364.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-09
Identity = 49/118 (41.53%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 97  LPALCKAEQNSKFLSFNMSNSDIHIKLGKTLKSSTLNNPFAEGLHHGWSRFVPEGNANRQ 156
           LPAL  A   S   S  MS SD H + G    S ++++  + GLH GWSR  P G+A RQ
Sbjct: 7   LPALRSARHRSTLRSRRMSISDTHTRSG---GSGSVSSRDSSGLHQGWSRLAPPGSARRQ 66

Query: 157 YVSETANVSGERGGWTRNFSDLVLDSPPKNGCIKMLPLTTNGFKTTAPEAVVLPPSPA 215
                     ERGG    FSD V  SPPK G  +  PL+T+G   TAP     PP P+
Sbjct: 67  ---------AERGGCVMVFSDTVRASPPKKGWTRTTPLSTSG--DTAPPTPRWPPWPS 110

[Close]

BLAST of Lsi04G002740 vs. NCBI nr
Match: KGN52063.1 (hypothetical protein Csa_008241 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 6.6e-04
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  MEGSEGPKFVLSFTSLSPLVSHQPSTNVESVLLLKD 37
          + GSEGPKFVLSFTSLS L SHQ  TNVESV LLK+
Sbjct: 50 LSGSEGPKFVLSFTSLSSLASHQQPTNVESVPLLKE 85

The following BLAST results are available for this feature:

BLAST of Lsi04G002740 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G002740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2QAQ7	1.9e-04	44.62	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A0A0KR51	3.2e-04	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608510 PE=4 SV=1	[more]

BLAST of Lsi04G002740 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB3501364.1	5.2e-09	41.53	unnamed protein product [Digitaria exilis]	[more]
KGN52063.1	6.6e-04	77.78	hypothetical protein Csa_008241 [Cucumis sativus]	[more]

BLAST of Lsi04G002740 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G002740.1	Lsi04G002740.1	mRNA