Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTTTGAGTTGTTTCCGGCGAGTCGGAGTACGGACAGAGGGAAAAGAAAGCGGGGAGACGACGCCGGGTCGGGAAGCCAGAAGGATGCGGTGGCCGACAGAGGAAAAGAAGCGGAGACGGCGACGGATGAAGAGGTGGAGGAGTTCTTCTCCATTCTGAAGCGATTACACGCGGCGACAAAATACATAGAGAAGATCGACGGTGCGAGCCGTTTGTTGATGGGAAAGAGATCGAAGCCGACGAAGTCGAACGAGGAAGAAGCCGATGAAGTTGAAATTAGGGCAGAGAGAATTCCAGAGCACAAATTGGACAGAAATTTGGATCTGGATCTGAACTTAGAACCTGTATGCGTCGAATCGGATGGTAAAACAAGCCGGAGTCCGAATCCGAAGCCGTCTTGCGTCGATTGGGCCGCCGATTCTTGCCGGAAGTAG
mRNA sequence
ATGCCGTTTGAGTTGTTTCCGGCGAGTCGGAGTACGGACAGAGGGAAAAGAAAGCGGGGAGACGACGCCGGGTCGGGAAGCCAGAAGGATGCGGTGGCCGACAGAGGAAAAGAAGCGGAGACGGCGACGGATGAAGAGGTGGAGGAGTTCTTCTCCATTCTGAAGCGATTACACGCGGCGACAAAATACATAGAGAAGATCGACGGTGCGAGCCGTTTGTTGATGGGAAAGAGATCGAAGCCGACGAAGTCGAACGAGGAAGAAGCCGATGAAGTTGAAATTAGGGCAGAGAGAATTCCAGAGCACAAATTGGACAGAAATTTGGATCTGGATCTGAACTTAGAACCTGTATGCGTCGAATCGGATGGTAAAACAAGCCGGAGTCCGAATCCGAAGCCGTCTTGCGTCGATTGGGCCGCCGATTCTTGCCGGAAGTAG
Coding sequence (CDS)
ATGCCGTTTGAGTTGTTTCCGGCGAGTCGGAGTACGGACAGAGGGAAAAGAAAGCGGGGAGACGACGCCGGGTCGGGAAGCCAGAAGGATGCGGTGGCCGACAGAGGAAAAGAAGCGGAGACGGCGACGGATGAAGAGGTGGAGGAGTTCTTCTCCATTCTGAAGCGATTACACGCGGCGACAAAATACATAGAGAAGATCGACGGTGCGAGCCGTTTGTTGATGGGAAAGAGATCGAAGCCGACGAAGTCGAACGAGGAAGAAGCCGATGAAGTTGAAATTAGGGCAGAGAGAATTCCAGAGCACAAATTGGACAGAAATTTGGATCTGGATCTGAACTTAGAACCTGTATGCGTCGAATCGGATGGTAAAACAAGCCGGAGTCCGAATCCGAAGCCGTCTTGCGTCGATTGGGCCGCCGATTCTTGCCGGAAGTAG
Protein sequence
MPFELFPASRSTDRGKRKRGDDAGSGSQKDAVADRGKEAETATDEEVEEFFSILKRLHAATKYIEKIDGASRLLMGKRSKPTKSNEEEADEVEIRAERIPEHKLDRNLDLDLNLEPVCVESDGKTSRSPNPKPSCVDWAADSCRK
Homology
BLAST of Lsi04G002610 vs. ExPASy TrEMBL
Match:
A0A0A0KT67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609110 PE=4 SV=1)
HSP 1 Score: 234.2 bits (596), Expect = 3.5e-58
Identity = 122/145 (84.14%), Postives = 129/145 (88.97%), Query Frame = 0
Query: 1 MPFELFPASRSTDRGKRKRGDDAGSGSQKDAVADRGKEAETATDEEVEEFFSILKRLHAA 60
MPFELFPASRST+RGKRKRGDDAG G+QKD A+ G+EAETATDEEVEEFFSILKRLHAA
Sbjct: 1 MPFELFPASRSTERGKRKRGDDAGVGNQKDVGAEEGREAETATDEEVEEFFSILKRLHAA 60
Query: 61 TKYIEKIDGASRLLMGKRSKPTKSNEEEADEVEIRAERIPEHKLDRNLDLDLNLEPVCVE 120
TKYIEKIDGAS LLMGKR KP KSNEEE DEV I+AERIPE KLDRNLDLDLNLEPVCVE
Sbjct: 61 TKYIEKIDGASHLLMGKRPKPMKSNEEEGDEVGIKAERIPEQKLDRNLDLDLNLEPVCVE 120
Query: 121 SDGKTSRSPNPKPSCVDWAADSCRK 146
S+GK+ N KPSCVD AADSCRK
Sbjct: 121 SEGKSRERQNRKPSCVDSAADSCRK 145
BLAST of Lsi04G002610 vs. ExPASy TrEMBL
Match:
A0A5A7SZN6 (Protein NIM1-INTERACTING 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00930 PE=4 SV=1)
HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57
Identity = 123/145 (84.83%), Postives = 128/145 (88.28%), Query Frame = 0
Query: 1 MPFELFPASRSTDRGKRKRGDDAGSGSQKDAVADRGKEAETATDEEVEEFFSILKRLHAA 60
MPFELFP SRSTDRGKRKRGDDAG+G+QKD V GKEAETATDEEVEEFFSILKRLHAA
Sbjct: 1 MPFELFPGSRSTDRGKRKRGDDAGAGNQKDVVTKEGKEAETATDEEVEEFFSILKRLHAA 60
Query: 61 TKYIEKIDGASRLLMGKRSKPTKSNEEEADEVEIRAERIPEHKLDRNLDLDLNLEPVCVE 120
TKYIEKIDGAS LLMGKRSK KSNEEE DEV IR ERIPE KLDRNLDLDLNLEPVCVE
Sbjct: 61 TKYIEKIDGASHLLMGKRSKRMKSNEEERDEVGIRVERIPEQKLDRNLDLDLNLEPVCVE 120
Query: 121 SDGKTSRSPNPKPSCVDWAADSCRK 146
S+GK+ +S N KPSCVD AA SCRK
Sbjct: 121 SEGKSRQSQNLKPSCVDSAAVSCRK 145
BLAST of Lsi04G002610 vs. ExPASy TrEMBL
Match:
A0A1S3BFE7 (protein NIM1-INTERACTING 2 OS=Cucumis melo OX=3656 GN=LOC103489277 PE=4 SV=1)
HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57
Identity = 123/145 (84.83%), Postives = 128/145 (88.28%), Query Frame = 0
Query: 1 MPFELFPASRSTDRGKRKRGDDAGSGSQKDAVADRGKEAETATDEEVEEFFSILKRLHAA 60
MPFELFP SRSTDRGKRKRGDDAG+G+QKD V GKEAETATDEEVEEFFSILKRLHAA
Sbjct: 1 MPFELFPGSRSTDRGKRKRGDDAGAGNQKDVVTKEGKEAETATDEEVEEFFSILKRLHAA 60
Query: 61 TKYIEKIDGASRLLMGKRSKPTKSNEEEADEVEIRAERIPEHKLDRNLDLDLNLEPVCVE 120
TKYIEKIDGAS LLMGKRSK KSNEEE DEV IR ERIPE KLDRNLDLDLNLEPVCVE
Sbjct: 61 TKYIEKIDGASHLLMGKRSKRMKSNEEERDEVGIRVERIPEQKLDRNLDLDLNLEPVCVE 120
Query: 121 SDGKTSRSPNPKPSCVDWAADSCRK 146
S+GK+ +S N KPSCVD AA SCRK
Sbjct: 121 SEGKSRQSQNLKPSCVDSAAVSCRK 145
BLAST of Lsi04G002610 vs. ExPASy TrEMBL
Match:
A0A6J1FZ89 (uncharacterized protein LOC111449260 OS=Cucurbita moschata OX=3662 GN=LOC111449260 PE=4 SV=1)
HSP 1 Score: 167.2 bits (422), Expect = 5.2e-38
Identity = 104/157 (66.24%), Postives = 118/157 (75.16%), Query Frame = 0
Query: 1 MPFELFPASRSTDRGKRK--RGDD------AGSGSQKDAVADRGKEAETATDEEVEEFFS 60
MPFELFP+SR TDRGKRK RG+ A +G+QK+ VA+RG E + +DEEVEEFF+
Sbjct: 1 MPFELFPSSR-TDRGKRKRERGEHADYDAAAAAGNQKETVAERGNERQMTSDEEVEEFFA 60
Query: 61 ILKRLHAATKYIEKIDGASRLLMGKRSKPTKSNEEEADEVEIRAERIPEHKLDRN--LDL 120
ILKRLHAATKYIEKIDGA LLMGKR+K K++E+E D VEIR +RIPE KLDRN LDL
Sbjct: 61 ILKRLHAATKYIEKIDGARSLLMGKRAKTAKASEKEGDGVEIRTKRIPEQKLDRNLDLDL 120
Query: 121 DLNLEPVCVESDGK--TSRSPNPKPSCVDWAADSCRK 146
DLNLEP VESDGK SRS N K D AADS RK
Sbjct: 121 DLNLEPASVESDGKERRSRSHNLKSLTDDSAADSRRK 156
BLAST of Lsi04G002610 vs. ExPASy TrEMBL
Match:
A0A6J1HXL3 (uncharacterized protein LOC111467566 OS=Cucurbita maxima OX=3661 GN=LOC111467566 PE=4 SV=1)
HSP 1 Score: 147.9 bits (372), Expect = 3.3e-32
Identity = 92/154 (59.74%), Postives = 106/154 (68.83%), Query Frame = 0
Query: 1 MPFELFPASRSTDRGKRKR---------GDDAGSGSQKDAVADRGKEAETATDEEVEEFF 60
MPFELFP+SR+ DRGKRKR A +G+QK VADRGKE E +DEEVEEFF
Sbjct: 1 MPFELFPSSRA-DRGKRKRERGEHADYEAAAADAGNQKKTVADRGKEREMTSDEEVEEFF 60
Query: 61 SILKRLHAATKYIEKIDGASRLLMGKRSKPTKSNEEEADEVEIRAERIPEHKLDRNLDLD 120
+ILKRLHAATKYIEKIDGA LMGKR+K K++E+E D VEIR +RIPE KLDRNLDLD
Sbjct: 61 TILKRLHAATKYIEKIDGARSFLMGKRAKTAKASEKEGDGVEIRTKRIPEQKLDRNLDLD 120
Query: 121 LNLEPVCVESDGKTSRSPNPKPSCVDWAADSCRK 146
L+L N +P+ D AADS RK
Sbjct: 121 LDL---------------NLEPASDDSAADSRRK 138
BLAST of Lsi04G002610 vs. NCBI nr
Match:
XP_038892789.1 (protein NIM1-INTERACTING 2 [Benincasa hispida])
HSP 1 Score: 252.7 bits (644), Expect = 1.9e-63
Identity = 132/145 (91.03%), Postives = 137/145 (94.48%), Query Frame = 0
Query: 1 MPFELFPASRSTDRGKRKRGDDAGSGSQKDAVADRGKEAETATDEEVEEFFSILKRLHAA 60
MPFELFPASRSTDRGKRKR DDAG+GSQ+DAVADRGKEAETATDEEVEEFFSILKRLHAA
Sbjct: 1 MPFELFPASRSTDRGKRKREDDAGTGSQRDAVADRGKEAETATDEEVEEFFSILKRLHAA 60
Query: 61 TKYIEKIDGASRLLMGKRSKPTKSNEEEADEVEIRAERIPEHKLDRNLDLDLNLEPVCVE 120
TKYIEKIDGASRLLMGKRSKPTKS+EEEADEVEIRAE+IP+HKLDRNLDLDLNLEP CVE
Sbjct: 61 TKYIEKIDGASRLLMGKRSKPTKSSEEEADEVEIRAEKIPDHKLDRNLDLDLNLEPACVE 120
Query: 121 SDGKTSRSPNPKPSCVDWAADSCRK 146
SD KTSRS N K SC D AADSCRK
Sbjct: 121 SDDKTSRSQNLKTSCADSAADSCRK 145
BLAST of Lsi04G002610 vs. NCBI nr
Match:
KGN52074.1 (hypothetical protein Csa_008594 [Cucumis sativus])
HSP 1 Score: 234.2 bits (596), Expect = 7.2e-58
Identity = 122/145 (84.14%), Postives = 129/145 (88.97%), Query Frame = 0
Query: 1 MPFELFPASRSTDRGKRKRGDDAGSGSQKDAVADRGKEAETATDEEVEEFFSILKRLHAA 60
MPFELFPASRST+RGKRKRGDDAG G+QKD A+ G+EAETATDEEVEEFFSILKRLHAA
Sbjct: 1 MPFELFPASRSTERGKRKRGDDAGVGNQKDVGAEEGREAETATDEEVEEFFSILKRLHAA 60
Query: 61 TKYIEKIDGASRLLMGKRSKPTKSNEEEADEVEIRAERIPEHKLDRNLDLDLNLEPVCVE 120
TKYIEKIDGAS LLMGKR KP KSNEEE DEV I+AERIPE KLDRNLDLDLNLEPVCVE
Sbjct: 61 TKYIEKIDGASHLLMGKRPKPMKSNEEEGDEVGIKAERIPEQKLDRNLDLDLNLEPVCVE 120
Query: 121 SDGKTSRSPNPKPSCVDWAADSCRK 146
S+GK+ N KPSCVD AADSCRK
Sbjct: 121 SEGKSRERQNRKPSCVDSAADSCRK 145
BLAST of Lsi04G002610 vs. NCBI nr
Match:
XP_008446591.1 (PREDICTED: protein NIM1-INTERACTING 2 [Cucumis melo] >KAA0034549.1 protein NIM1-INTERACTING 2 [Cucumis melo var. makuwa] >TYK09103.1 protein NIM1-INTERACTING 2 [Cucumis melo var. makuwa])
HSP 1 Score: 232.6 bits (592), Expect = 2.1e-57
Identity = 123/145 (84.83%), Postives = 128/145 (88.28%), Query Frame = 0
Query: 1 MPFELFPASRSTDRGKRKRGDDAGSGSQKDAVADRGKEAETATDEEVEEFFSILKRLHAA 60
MPFELFP SRSTDRGKRKRGDDAG+G+QKD V GKEAETATDEEVEEFFSILKRLHAA
Sbjct: 1 MPFELFPGSRSTDRGKRKRGDDAGAGNQKDVVTKEGKEAETATDEEVEEFFSILKRLHAA 60
Query: 61 TKYIEKIDGASRLLMGKRSKPTKSNEEEADEVEIRAERIPEHKLDRNLDLDLNLEPVCVE 120
TKYIEKIDGAS LLMGKRSK KSNEEE DEV IR ERIPE KLDRNLDLDLNLEPVCVE
Sbjct: 61 TKYIEKIDGASHLLMGKRSKRMKSNEEERDEVGIRVERIPEQKLDRNLDLDLNLEPVCVE 120
Query: 121 SDGKTSRSPNPKPSCVDWAADSCRK 146
S+GK+ +S N KPSCVD AA SCRK
Sbjct: 121 SEGKSRQSQNLKPSCVDSAAVSCRK 145
BLAST of Lsi04G002610 vs. NCBI nr
Match:
XP_023542001.1 (uncharacterized protein LOC111801981 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 176.0 bits (445), Expect = 2.3e-40
Identity = 105/155 (67.74%), Postives = 119/155 (76.77%), Query Frame = 0
Query: 1 MPFELFPASRSTDRGKRK--RGDD------AGSGSQKDAVADRGKEAETATDEEVEEFFS 60
MPFELFP+SR TDRGKRK RG+ A +G+QK+ VA+RG E E +DEEVEEFF+
Sbjct: 1 MPFELFPSSR-TDRGKRKRERGEHADYDAAAAAGNQKETVAERGNEREMTSDEEVEEFFA 60
Query: 61 ILKRLHAATKYIEKIDGASRLLMGKRSKPTKSNEEEADEVEIRAERIPEHKLDRNLDLDL 120
ILKRLHAATKYIEKIDGA LLMGKR+K K++E+E D VEIR +RIP+ KLDRNLDLDL
Sbjct: 61 ILKRLHAATKYIEKIDGARSLLMGKRAKTAKASEKEGDGVEIRTKRIPDQKLDRNLDLDL 120
Query: 121 NLEPVCVESDGK--TSRSPNPKPSCVDWAADSCRK 146
NLEP CVESDGK SRS N K D AADS RK
Sbjct: 121 NLEPTCVESDGKERRSRSHNLKSLTGDSAADSRRK 154
BLAST of Lsi04G002610 vs. NCBI nr
Match:
KAG6573971.1 (hypothetical protein SDJN03_27858, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013028.1 hypothetical protein SDJN02_25784, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 168.3 bits (425), Expect = 4.8e-38
Identity = 105/157 (66.88%), Postives = 118/157 (75.16%), Query Frame = 0
Query: 1 MPFELFPASRSTDRGKRK--RGDD------AGSGSQKDAVADRGKEAETATDEEVEEFFS 60
MPFELFP+SR TDRGKRK RG+ A +G+QK+ VA+RG E E +DEEVEEFF+
Sbjct: 1 MPFELFPSSR-TDRGKRKRERGEHADYDAAAAAGNQKETVAERGNEREMTSDEEVEEFFA 60
Query: 61 ILKRLHAATKYIEKIDGASRLLMGKRSKPTKSNEEEADEVEIRAERIPEHKLDRN--LDL 120
ILKRLHAATKYIEKIDGA LLMGKR+K K++E+E D VEIR +RIPE KLDRN LDL
Sbjct: 61 ILKRLHAATKYIEKIDGARSLLMGKRAKTAKASEKEGDGVEIRTKRIPEQKLDRNLDLDL 120
Query: 121 DLNLEPVCVESDGK--TSRSPNPKPSCVDWAADSCRK 146
DLNLEP VESDGK SRS N K D AADS RK
Sbjct: 121 DLNLEPASVESDGKERRSRSHNLKSLTDDSAADSRRK 156
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KT67 | 3.5e-58 | 84.14 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609110 PE=4 SV=1 | [more] |
| A0A5A7SZN6 | 1.0e-57 | 84.83 | Protein NIM1-INTERACTING 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
| A0A1S3BFE7 | 1.0e-57 | 84.83 | protein NIM1-INTERACTING 2 OS=Cucumis melo OX=3656 GN=LOC103489277 PE=4 SV=1 | [more] |
| A0A6J1FZ89 | 5.2e-38 | 66.24 | uncharacterized protein LOC111449260 OS=Cucurbita moschata OX=3662 GN=LOC1114492... | [more] |
| A0A6J1HXL3 | 3.3e-32 | 59.74 | uncharacterized protein LOC111467566 OS=Cucurbita maxima OX=3661 GN=LOC111467566... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_038892789.1 | 1.9e-63 | 91.03 | protein NIM1-INTERACTING 2 [Benincasa hispida] | [more] |
| KGN52074.1 | 7.2e-58 | 84.14 | hypothetical protein Csa_008594 [Cucumis sativus] | [more] |
| XP_008446591.1 | 2.1e-57 | 84.83 | PREDICTED: protein NIM1-INTERACTING 2 [Cucumis melo] >KAA0034549.1 protein NIM1-... | [more] |
| XP_023542001.1 | 2.3e-40 | 67.74 | uncharacterized protein LOC111801981 [Cucurbita pepo subsp. pepo] | [more] |
| KAG6573971.1 | 4.8e-38 | 66.88 | hypothetical protein SDJN03_27858, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
