Lsi04G002510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G002510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	CLAVATA3/ESR (CLE)-related protein 43
Location	chr04: 2578663 .. 2578992 (+)
RNA-Seq Expression	Lsi04G002510
Synteny	Lsi04G002510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGGTTTTTCTTCCGGCCGCCGGCAAGCCATGTTTACCAGAAGAATCGCCACTTCCTCCTCCTCTGCCTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCGCTGCCAAGTTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCACACGGCGGACAAATCACTTGCTAGCGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGCCACCGTCCCGATGAAGGATTCGAAGACAGCAAACGGAAAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

mRNA sequence

ATGTGGGGTTTTTCTTCCGGCCGCCGGCAAGCCATGTTTACCAGAAGAATCGCCACTTCCTCCTCCTCTGCCTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCGCTGCCAAGTTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCACACGGCGGACAAATCACTTGCTAGCGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGCCACCGTCCCGATGAAGGATTCGAAGACAGCAAACGGAAAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Coding sequence (CDS)

ATGTGGGGTTTTTCTTCCGGCCGCCGGCAAGCCATGTTTACCAGAAGAATCGCCACTTCCTCCTCCTCTGCCTTTGCCATACTAATTTTGATCCTGTGGGTGTCACAGATTTGGGTTTGTTGTCGCTGCCAAGTTAGAGCTTCACGGATTTTTCCTCCGCCGCCGCACACGGCGGACAAATCACTTGCTAGCGAAGAAAAAGACAACGCCAAAAATGAACTTCTCCAAAAATACTTCAACGGCAGAGCCTTCGATCGCCACCGTCCCGATGAAGGATTCGAAGACAGCAAACGGAAAATACCCAGTTGTCCGGATCCTCTTCATAATTAG

Protein sequence

MWGFSSGRRQAMFTRRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADKSLASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN

Homology

[Close]

BLAST of Lsi04G002510 vs. ExPASy Swiss-Prot
Match: Q6IWB1 (CLAVATA3/ESR (CLE)-related protein 43 OS=Arabidopsis thaliana OX=3702 GN=CLE43 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.5e-06
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 25  FAILILILWVSQIWVCCRCQVRASRIFPPPPHT---ADKSLASEEKDNAKNE----LLQK 84
           F++ +L++ + QIW+      R  R  P         D++     K+  KNE    L Q+
Sbjct: 10  FSVALLLISLFQIWL-----FREGRQVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLFQR 69

Query: 85  YFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           YF GR+F  +  +  FEDS R+IPS PD LHN
Sbjct: 70  YFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]

BLAST of Lsi04G002510 vs. ExPASy Swiss-Prot
Match: Q9LUA1 (CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.7e-04
Identity = 30/97 (30.93%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 15  RRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADKSLASEEKDNAKNEL 74
           R   +S ++   ++IL+ ++  ++ C   +V A RIFP  P +  +          + +L
Sbjct: 5   REWRSSLTTTLLMVILLSYMLHLF-CVYSRVGAIRIFPETPASGKRQ---------EEDL 64

Query: 75  LQKYFNGRAFD--RHRPDEGFEDSKRKIPSCPDPLHN 110
           ++KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 65  MKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

[Close]

BLAST of Lsi04G002510 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.4e-41
Identity = 89/107 (83.18%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 12  MFTRRIATSSS----SAFAILILILWVSQIWVCCRCQVRASRIF-----PPPPHTADKSL 71
           MF RRI TSSS    SAFAILILILWVSQIWVCC CQ RASRIF     PPPPH ADKSL
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 72  ASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           + EEKDNAKN+LLQKYFNGRAFDRHR DEGFEDSKRKIPSCPDPLHN
Sbjct: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Lsi04G002510 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.7e-22
Identity = 64/98 (65.31%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 12  MFTRRIA--TSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADKSLASEEKDN 71
           M TRRIA  +SS+S+FAILILILWVSQIWVCC CQ RASRI PPP       L  + K +
Sbjct: 1   MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP-------LTGDAKHD 60

Query: 72  A--KNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPD 106
           A  KNEL+QKY  GRA DRH   EGFEDSKR++PSC D
Sbjct: 61  ASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCSD 88

[Close]

BLAST of Lsi04G002510 vs. ExPASy TrEMBL
Match: A0A2C9UKL3 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 43/109 (39.45%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 4   FSSGRRQAMFTRRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPP---PPHTADK 63
           FSS RR  M+       SSS   +++ +++V QIWVC  C+  A RIFP     P+   +
Sbjct: 3   FSSSRRSIMY-------SSSLLVLVVFLIFVLQIWVCSDCKAGAIRIFPDNGMAPNLKQR 62

Query: 64  SLASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           ++++ +  ++K +L  K+FNGR +  +   +GFE++KR++PSCPDPLHN
Sbjct: 63  NISTTDNKDSKEDLFHKFFNGRQYSFNTTKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of Lsi04G002510 vs. ExPASy TrEMBL
Match: A0A2C9VNI0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.2e-14
Identity = 44/109 (40.37%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 4   FSSGRRQAMFTRRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPP---PPHTADK 63
           F+S RR  M+       SSS  A+++ ++++ QIWVC  C+  A RIFP    P     +
Sbjct: 3   FASSRRSIMY-------SSSLVALVVFLIFMLQIWVCSDCKAGAIRIFPDNGMPSKLKHR 62

Query: 64  SLASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           ++ + +    K +LL+K+FNGRA   +   +GFE++KR++PSCPDPLHN
Sbjct: 63  NITTTDNKATKQDLLRKFFNGRASSFNSSKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of Lsi04G002510 vs. ExPASy TrEMBL
Match: A0A061E6F8 (Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.7e-14
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 0


Query: 2   WGFSSGRRQAMFTRRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADKS 61
           W FSS        R++  SS     +++LI++  QIWVCC C+  A RI P         
Sbjct: 4   WFFSS--------RKLLYSS----VVVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTE 63

Query: 62  LASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
               + +  K +L QKYFNGR+F  ++ D GFE+SKR++PSCPDPLHN
Sbjct: 64  SQGMKDNKGKGDLFQKYFNGRSFSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]

BLAST of Lsi04G002510 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40
Identity = 89/107 (83.18%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 12  MFTRRIATSSS----SAFAILILILWVSQIWVCCRCQVRASRIF-----PPPPHTADKSL 71
           MF RRI TSSS    SAFAILILILWVSQIWVCC CQ RASRIF     PPPPH ADKSL
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 72  ASEEKDNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           + EEKDNAKN+LLQKYFNGRAFDRHR DEGFEDSKRKIPSCPDPLHN
Sbjct: 61  SGEEKDNAKNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of Lsi04G002510 vs. NCBI nr
Match: KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.6 bits (418), Expect = 2.4e-37
Identity = 84/114 (73.68%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MWGFSSGRRQAMFTRRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIF-PPPPHTAD 60
           M G+SS RR AM TRRIATSSSS+FA+LI ILWVSQIWVC  CQ RASRIF PPPPHTAD
Sbjct: 1   MSGYSSRRRAAMCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTAD 60

Query: 61  KSLASEEK----DNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
            +L  ++K     NA+ ELL+KYF G+AFDRHR DEGFEDSKR+IPSCPDPLHN
Sbjct: 61  TTLTGDQKYNANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114

[Close]

BLAST of Lsi04G002510 vs. NCBI nr
Match: KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 4.2e-34
Identity = 77/103 (74.76%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 12  MFTRRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIF-PPPPHTADKSLASEEK--- 71
           M TRRIATSSSS+FA+LI ILWVSQIWVC  CQ RASRIF PPPPHTAD +L  ++K   
Sbjct: 1   MCTRRIATSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKYNA 60

Query: 72  -DNAKNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
             NA+ ELL+KYF G+AFDRHR DEGFEDSKR+IPSCPDPLHN
Sbjct: 61  NANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 103

[Close]

BLAST of Lsi04G002510 vs. NCBI nr
Match: KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-24
Identity = 73/106 (68.87%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 12  MFTRRIATSSSSAFAILILILWVSQIWV-CCRCQVRASRIF------PPPPHTADKSLAS 71
           M TRRIA SSS  FAILILILWVSQIWV CC  Q RASRIF      PPPPHT DK+   
Sbjct: 1   MCTRRIAASSS--FAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKT--- 60

Query: 72  EEKDNAKNELLQKYFNGRAF-DRHRPDEGFEDSKRKIPSCPDPLHN 110
            +  N + ELLQKYF  RAF D HR  EGF DSKRKIPSCPDPLHN
Sbjct: 61  -DHANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100

[Close]

BLAST of Lsi04G002510 vs. NCBI nr
Match: XP_022150497.1 (uncharacterized protein LOC111018633 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 64/98 (65.31%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 12  MFTRRIA--TSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADKSLASEEKDN 71
           M TRRIA  +SS+S+FAILILILWVSQIWVCC CQ RASRI PPP       L  + K +
Sbjct: 1   MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP-------LTGDAKHD 60

Query: 72  A--KNELLQKYFNGRAFDRHRPDEGFEDSKRKIPSCPD 106
           A  KNEL+QKY  GRA DRH   EGFEDSKR++PSC D
Sbjct: 61  ASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCSD 88

[Close]

BLAST of Lsi04G002510 vs. TAIR 10
Match: AT1G25425.1 (CLAVATA3/ESR-RELATED 43 )

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-07
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 25  FAILILILWVSQIWVCCRCQVRASRIFPPPPHT---ADKSLASEEKDNAKNE----LLQK 84
           F++ +L++ + QIW+      R  R  P         D++     K+  KNE    L Q+
Sbjct: 10  FSVALLLISLFQIWL-----FREGRQVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLFQR 69

Query: 85  YFNGRAFDRHRPDEGFEDSKRKIPSCPDPLHN 110
           YF GR+F  +  +  FEDS R+IPS PD LHN
Sbjct: 70  YFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

[Close]

BLAST of Lsi04G002510 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 45.4 bits (106), Expect = 3.3e-05
Identity = 30/97 (30.93%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 15  RRIATSSSSAFAILILILWVSQIWVCCRCQVRASRIFPPPPHTADKSLASEEKDNAKNEL 74
           R   +S ++   ++IL+ ++  ++ C   +V A RIFP  P +  +          + +L
Sbjct: 5   REWRSSLTTTLLMVILLSYMLHLF-CVYSRVGAIRIFPETPASGKRQ---------EEDL 64

Query: 75  LQKYFNGRAFD--RHRPDEGFEDSKRKIPSCPDPLHN 110
           ++KYF    F        +G  +SKR +PSCPDPLHN
Sbjct: 65  MKKYFGAGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:

BLAST of Lsi04G002510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6IWB1	8.5e-06	35.87	CLAVATA3/ESR (CLE)-related protein 43 OS=Arabidopsis thaliana OX=3702 GN=CLE43 P...	[more]
Q9LUA1	4.7e-04	30.93	CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 P...	[more]

BLAST of Lsi04G002510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR66	8.4e-41	83.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A6J1DAV9	6.7e-22	65.31	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A2C9UKL3	1.0e-14	39.45	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=...	[more]
A0A2C9VNI0	5.2e-14	40.37	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=...	[more]
A0A061E6F8	6.7e-14	42.59	Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 ...	[more]

BLAST of Lsi04G002510 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52083.1	1.7e-40	83.18	hypothetical protein Csa_008231 [Cucumis sativus]	[more]
KAG6601288.1	2.4e-37	73.68	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7032076.1	4.2e-34	74.76	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6573960.1	1.8e-24	68.87	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022150497.1	1.4e-21	65.31	uncharacterized protein LOC111018633 [Momordica charantia]	[more]

BLAST of Lsi04G002510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25425.1	6.0e-07	35.87	CLAVATA3/ESR-RELATED 43	[more]
AT3G25905.1	3.3e-05	30.93	CLAVATA3/ESR-RELATED 27	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..109
None	No IPR available	PANTHER	PTHR37184:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 14..109
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 14..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G002510.1	Lsi04G002510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane