Lsi04G002350 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G002350
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2
Location	chr04: 2380285 .. 2380869 (+)
RNA-Seq Expression	Lsi04G002350
Synteny	Lsi04G002350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCAAATCTCTCCATCTTTATTTTCATTCTCATCTTCCTCGCGCCGGAAACATCCTCCCCTTCCGCCGCCGTCGACTACCACTTCAAGGCCTGCAGTAGGCCGATGTCCTGCGGCGACAACCAGACAATTCAATACCCATTTTACATCCATAATCGCCAAGATTCGTTCTGTGGGTACCCGGGATTTAAGCTGAAATGTCATCAAAACGGCCACCCGATCCTCCATCTCGCCGGCAGGGACTTTTCCGTCCGCAGTATTTCATACGAAGATCACTCCCTCCGCCTCTCCGACCACGCCATTTTAACAGCCTCTGAGTGTAGTCCTTTGATTCAAAACCTCTCTGTTCTGGCTAACGAGTGGTTCCACCTCGCCGCCAGGCAGGGCGGCATTTGCAGCAGAGAGGAAAGCCGGGAAGAGGCAGAGAGAAATGGGTTGGTGGTGGAATGGACGGCCGGAGAGTGTAAATTCTGCAACAAGAGCGGTGGGTTCTGTGGATTTGACGATTCGACTCATTTTTTCAAGTGTTATTGTCCTGATCGACCCCATGCTTTTCACTGTACTCCTCCTCCGCCGGGTTAG

mRNA sequence

ATGGTGTCAAATCTCTCCATCTTTATTTTCATTCTCATCTTCCTCGCGCCGGAAACATCCTCCCCTTCCGCCGCCGTCGACTACCACTTCAAGGCCTGCAGTAGGCCGATGTCCTGCGGCGACAACCAGACAATTCAATACCCATTTTACATCCATAATCGCCAAGATTCGTTCTGTGGGTACCCGGGATTTAAGCTGAAATGTCATCAAAACGGCCACCCGATCCTCCATCTCGCCGGCAGGGACTTTTCCGTCCGCAGTATTTCATACGAAGATCACTCCCTCCGCCTCTCCGACCACGCCATTTTAACAGCCTCTGAGTGTAGTCCTTTGATTCAAAACCTCTCTGTTCTGGCTAACGAGTGGTTCCACCTCGCCGCCAGGCAGGGCGGCATTTGCAGCAGAGAGGAAAGCCGGGAAGAGGCAGAGAGAAATGGGTTGGTGGTGGAATGGACGGCCGGAGAGTGTAAATTCTGCAACAAGAGCGGTGGGTTCTGTGGATTTGACGATTCGACTCATTTTTTCAAGTGTTATTGTCCTGATCGACCCCATGCTTTTCACTGTACTCCTCCTCCGCCGGGTTAG

Coding sequence (CDS)

ATGGTGTCAAATCTCTCCATCTTTATTTTCATTCTCATCTTCCTCGCGCCGGAAACATCCTCCCCTTCCGCCGCCGTCGACTACCACTTCAAGGCCTGCAGTAGGCCGATGTCCTGCGGCGACAACCAGACAATTCAATACCCATTTTACATCCATAATCGCCAAGATTCGTTCTGTGGGTACCCGGGATTTAAGCTGAAATGTCATCAAAACGGCCACCCGATCCTCCATCTCGCCGGCAGGGACTTTTCCGTCCGCAGTATTTCATACGAAGATCACTCCCTCCGCCTCTCCGACCACGCCATTTTAACAGCCTCTGAGTGTAGTCCTTTGATTCAAAACCTCTCTGTTCTGGCTAACGAGTGGTTCCACCTCGCCGCCAGGCAGGGCGGCATTTGCAGCAGAGAGGAAAGCCGGGAAGAGGCAGAGAGAAATGGGTTGGTGGTGGAATGGACGGCCGGAGAGTGTAAATTCTGCAACAAGAGCGGTGGGTTCTGTGGATTTGACGATTCGACTCATTTTTTCAAGTGTTATTGTCCTGATCGACCCCATGCTTTTCACTGTACTCCTCCTCCGCCGGGTTAG

Protein sequence

MVSNLSIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCGYPGFKLKCHQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAILTASECSPLIQNLSVLANEWFHLAARQGGICSREESREEAERNGLVVEWTAGECKFCNKSGGFCGFDDSTHFFKCYCPDRPHAFHCTPPPPG

Homology

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BLAST of Lsi04G002350 vs. ExPASy Swiss-Prot
Match: P0C5E2 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-1.2 PE=2 SV=3)

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-15
Identity = 68/241 (28.22%), Postives = 98/241 (40.66%), Query Frame = 0


Query: 6   SIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCGYPGFK 65
           SIF +  I +A +T S    +D  FKAC  P SCG    I YPFY+  +Q+SFCGYP F+
Sbjct: 12  SIFFYFTI-IATQTLS----LDPKFKAC-EPKSCGKGPQISYPFYLSGKQESFCGYPSFE 71

Query: 66  LKC-HQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAI---------------LTASECS 125
           L C  +   P+L ++G ++ +++ISY   S ++ +                   T    +
Sbjct: 72  LTCDDEEKLPVLGISGEEYVIKNISYLTQSFQVVNSKASHDPCPRPLNNLTLHRTPFFVN 131

Query: 126 PLIQNLSVLANEWFHL----------------AARQGGICSREESREEAE---------- 184
           P   N ++L N   HL                  R  G+  R++  +E +          
Sbjct: 132 PSHINFTILYNCSDHLLEDFRTYPLTCARNTSLLRSFGVFDRKKLGKEKQIASMSCQKLV 191

[Close]

BLAST of Lsi04G002350 vs. ExPASy Swiss-Prot
Match: F4HQ23 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-2.7 PE=3 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 25/68 (36.76%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 31  KACSRPMSCGDNQTIQYPFYIHNRQDSFCGYPGFKLKCHQNGHPILHLAGRDFSVRSISY 90
           + CS   SCG+ + + YPF+I  R+  +CG+P FKL C   G   L++A  +F + ++SY
Sbjct: 250 RRCSERFSCGNQRNLYYPFWIPGRE--YCGHPDFKLDC-SGGFAELNIASVNFRILNMSY 309

Query: 91  EDHSLRLS 99
           +  + RL+
Sbjct: 310 DSSNKRLA 314

[Close]

BLAST of Lsi04G002350 vs. ExPASy Swiss-Prot
Match: P0CH01 (Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.3e-04
Identity = 26/73 (35.62%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 29  HFKACSRPMSCG-DNQTIQYPFYIHNRQDSFCGYPGFKLKCHQNGHPILHLAGR-DFSVR 88
           H + CS   SCG D+  +++PF++ ++Q   CG+ GF L+C  +    L L     F VR
Sbjct: 22  HPQQCS-SSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQCTASPKTALKLPNSGTFLVR 81

Query: 89  SISYEDHSLRLSD 100
            I Y    +RL D
Sbjct: 82  EIDYLSQQIRLYD 93

[Close]

BLAST of Lsi04G002350 vs. ExPASy TrEMBL
Match: A0A1S3BFJ8 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103489305 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.6e-90
Identity = 156/194 (80.41%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MVSNLSIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCG 60
           ++SNL IFIFIL+ L     +PS AVD+HF+AC +PM+CGDNQTIQYPFYIHNRQ SFCG
Sbjct: 2   VLSNLPIFIFILVLL-----TPSVAVDFHFEACRQPMTCGDNQTIQYPFYIHNRQRSFCG 61

Query: 61  YPGFKLKCHQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAILTASECSPLIQNLSVLAN 120
           YPGF+LKCHQNGHPILHLAGRDFSVRSISYE+HSLRLSDHA+ +A+ECS LI++LSVL N
Sbjct: 62  YPGFQLKCHQNGHPILHLAGRDFSVRSISYEEHSLRLSDHAVSSAAECSALIRSLSVLTN 121

Query: 121 EWFHLAARQGGICSREESREEAERNGLVVEWTAGECKFCNKSGGFCGFDDSTHFFKCYCP 180
           E FHL   Q GIC  EESR+EAERNGLVVEWTAGEC+FCNKSGG+CGFDDSTHFFKCYCP
Sbjct: 122 ERFHLGDGQDGICGGEESRDEAERNGLVVEWTAGECRFCNKSGGYCGFDDSTHFFKCYCP 181

Query: 181 DRPHAFHCTPPPPG 195
           DRPHAFHCTPPPPG
Sbjct: 182 DRPHAFHCTPPPPG 190

[Close]

BLAST of Lsi04G002350 vs. ExPASy TrEMBL
Match: A0A1S3BF16 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489305 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.9e-90
Identity = 155/193 (80.31%), Postives = 173/193 (89.64%), Query Frame = 0


Query: 1   MVSNLSIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCG 60
           ++SNL IFIFIL+ L     +PS AVD+HF+AC +PM+CGDNQTIQYPFYIHNRQ SFCG
Sbjct: 2   VLSNLPIFIFILVLL-----TPSVAVDFHFEACRQPMTCGDNQTIQYPFYIHNRQRSFCG 61

Query: 61  YPGFKLKCHQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAILTASECSPLIQNLSVLAN 120
           YPGF+LKCHQNGHPILHLAGRDFSVRSISYE+HSLRLSDHA+ +A+ECS LI++LSVL N
Sbjct: 62  YPGFQLKCHQNGHPILHLAGRDFSVRSISYEEHSLRLSDHAVSSAAECSALIRSLSVLTN 121

Query: 121 EWFHLAARQGGICSREESREEAERNGLVVEWTAGECKFCNKSGGFCGFDDSTHFFKCYCP 180
           E FHL   Q GIC  EESR+EAERNGLVVEWTAGEC+FCNKSGG+CGFDDSTHFFKCYCP
Sbjct: 122 ERFHLGDGQDGICGGEESRDEAERNGLVVEWTAGECRFCNKSGGYCGFDDSTHFFKCYCP 181

Query: 181 DRPHAFHCTPPPP 194
           DRPHAFHCTPPPP
Sbjct: 182 DRPHAFHCTPPPP 189

[Close]

BLAST of Lsi04G002350 vs. ExPASy TrEMBL
Match: A0A0A0KUJ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610365 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.3e-89
Identity = 154/191 (80.63%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MVSNLSIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCG 60
           MVSNL IFIFIL+ L P+ S+PSAAVD+HF+ C +PM+CGDNQTIQYPFYI NRQ SFCG
Sbjct: 1   MVSNLPIFIFILLLLFPDKSTPSAAVDFHFEDCRQPMTCGDNQTIQYPFYIQNRQQSFCG 60

Query: 61  YPGFKLKCHQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAILTASECSPLIQNLSVLAN 120
           YPGF+LKCHQNGHPIL+LAGRDFSVRSISYE+HSLRLSDHA+ +A+ECS LI+NLSVLAN
Sbjct: 61  YPGFQLKCHQNGHPILNLAGRDFSVRSISYEEHSLRLSDHAVSSAAECSSLIRNLSVLAN 120

Query: 121 EWFHLAARQGGICSREESREEAERNGLVVEWTAGECKFCNKSGGFCGFDDSTHFFKCYCP 180
           E F L   Q  IC  EESR+EAERNGL+VEWTAGECKFCNKSGG+CGFD+STHFFKCYCP
Sbjct: 121 ERFSLGDGQDRICDGEESRDEAERNGLIVEWTAGECKFCNKSGGYCGFDESTHFFKCYCP 180

Query: 181 DRPHAFHCTPP 192
           DRPHAFHCTPP
Sbjct: 181 DRPHAFHCTPP 191

[Close]

BLAST of Lsi04G002350 vs. ExPASy TrEMBL
Match: A0A6J1HSS0 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467449 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 5.3e-78
Identity = 147/193 (76.17%), Postives = 155/193 (80.31%), Query Frame = 0


Query: 1   MVSNLSIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCG 60
           MV N SIFI I IFL P T  PSAAVD HF+AC RPM+C D QTIQYPF+I +RQ  FCG
Sbjct: 1   MVLNFSIFILISIFLPPAT--PSAAVDRHFEACRRPMACDDGQTIQYPFHIEHRQQKFCG 60

Query: 61  YPGFKLKCHQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAILTASECSPLIQNLSVLAN 120
           YPGFKLKCHQNGHPILHL+GRD  V SISYE HSLRLSD A+LTASEC  LI NLS L N
Sbjct: 61  YPGFKLKCHQNGHPILHLSGRDIVVLSISYETHSLRLSDDAVLTASECRLLIGNLS-LFN 120

Query: 121 EWFHLAARQGGICSREESREEAERNGLVVEWTAGECKFCNKSGGFCGFDDSTHFFKCYCP 180
           E FHLA  QG ICSREE R  AERNGLV++WTAGEC FCNKSGGFCGFD STHFFKCYCP
Sbjct: 121 EPFHLADGQGEICSREERRRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTHFFKCYCP 180

Query: 181 DRPHAFHCTPPPP 194
           DRPHA  C PP P
Sbjct: 181 DRPHALRCNPPSP 190

[Close]

BLAST of Lsi04G002350 vs. ExPASy TrEMBL
Match: A0A6J1G210 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449960 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.9e-78
Identity = 146/193 (75.65%), Postives = 157/193 (81.35%), Query Frame = 0


Query: 1   MVSNLSIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCG 60
           MV +LSIFIFI IFL P T  PSAAVD HF+AC RPMSC D QTIQYPF+I +RQ  FCG
Sbjct: 1   MVLDLSIFIFISIFLPPAT--PSAAVDRHFEACRRPMSCDDGQTIQYPFHIEHRQQKFCG 60

Query: 61  YPGFKLKCHQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAILTASECSPLIQNLSVLAN 120
           YPGFKLKCHQNGHPILHL+GRD  VRSISY+ HSLRLSD A+LTASEC  LI NLS L N
Sbjct: 61  YPGFKLKCHQNGHPILHLSGRDLVVRSISYKTHSLRLSDDAVLTASECRLLIGNLS-LFN 120

Query: 121 EWFHLAARQGGICSREESREEAERNGLVVEWTAGECKFCNKSGGFCGFDDSTHFFKCYCP 180
           E FHLA  QG IC  EE+R  AERNGLV++WTAGEC FCNKSGGFCGFD STH+FKCYCP
Sbjct: 121 EPFHLADGQGEICGGEETRRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTHYFKCYCP 180

Query: 181 DRPHAFHCTPPPP 194
           DRPHA  C PP P
Sbjct: 181 DRPHALRCNPPSP 190

[Close]

BLAST of Lsi04G002350 vs. NCBI nr
Match: XP_038892236.1 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2 [Benincasa hispida])

HSP 1 Score: 353.6 bits (906), Expect = 1.1e-93
Identity = 163/191 (85.34%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 1   MVSNLSIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCG 60
           MVSNLSIFIFI+IFL+PETSS SAAVD+HF+AC RPMSCGDNQTIQYPFYI +RQ  FCG
Sbjct: 1   MVSNLSIFIFIIIFLSPETSSTSAAVDFHFEACRRPMSCGDNQTIQYPFYIQDRQRPFCG 60

Query: 61  YPGFKLKCHQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAILTASECSPLIQNLSVLAN 120
           YPGFKLKCHQNGHPILHLAGRDF +R ISYEDHS+RLSDHAILTAS+CSPLI+NLSVL N
Sbjct: 61  YPGFKLKCHQNGHPILHLAGRDFFIRHISYEDHSVRLSDHAILTASDCSPLIRNLSVLPN 120

Query: 121 EWFHLAARQGGICSREESREEAERNGLVVEWTAGECKFCNKSGGFCGFDDSTHFFKCYCP 180
           E F LAA Q GIC REESR+EAERNGLVVEWTAGEC+FCN S GFCGFD STH FKCYCP
Sbjct: 121 ERFRLAAGQDGICGREESRDEAERNGLVVEWTAGECRFCNNSDGFCGFDSSTHLFKCYCP 180

Query: 181 DRPHAFHCTPP 192
           DRPHAFHCTPP
Sbjct: 181 DRPHAFHCTPP 191

[Close]

BLAST of Lsi04G002350 vs. NCBI nr
Match: XP_008446632.1 (PREDICTED: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X4 [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 3.3e-90
Identity = 156/194 (80.41%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MVSNLSIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCG 60
           ++SNL IFIFIL+ L     +PS AVD+HF+AC +PM+CGDNQTIQYPFYIHNRQ SFCG
Sbjct: 2   VLSNLPIFIFILVLL-----TPSVAVDFHFEACRQPMTCGDNQTIQYPFYIHNRQRSFCG 61

Query: 61  YPGFKLKCHQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAILTASECSPLIQNLSVLAN 120
           YPGF+LKCHQNGHPILHLAGRDFSVRSISYE+HSLRLSDHA+ +A+ECS LI++LSVL N
Sbjct: 62  YPGFQLKCHQNGHPILHLAGRDFSVRSISYEEHSLRLSDHAVSSAAECSALIRSLSVLTN 121

Query: 121 EWFHLAARQGGICSREESREEAERNGLVVEWTAGECKFCNKSGGFCGFDDSTHFFKCYCP 180
           E FHL   Q GIC  EESR+EAERNGLVVEWTAGEC+FCNKSGG+CGFDDSTHFFKCYCP
Sbjct: 122 ERFHLGDGQDGICGGEESRDEAERNGLVVEWTAGECRFCNKSGGYCGFDDSTHFFKCYCP 181

Query: 181 DRPHAFHCTPPPPG 195
           DRPHAFHCTPPPPG
Sbjct: 182 DRPHAFHCTPPPPG 190

[Close]

BLAST of Lsi04G002350 vs. NCBI nr
Match: XP_008446630.1 (PREDICTED: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2 [Cucumis melo])

HSP 1 Score: 339.7 bits (870), Expect = 1.6e-89
Identity = 155/193 (80.31%), Postives = 173/193 (89.64%), Query Frame = 0


Query: 1   MVSNLSIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCG 60
           ++SNL IFIFIL+ L     +PS AVD+HF+AC +PM+CGDNQTIQYPFYIHNRQ SFCG
Sbjct: 2   VLSNLPIFIFILVLL-----TPSVAVDFHFEACRQPMTCGDNQTIQYPFYIHNRQRSFCG 61

Query: 61  YPGFKLKCHQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAILTASECSPLIQNLSVLAN 120
           YPGF+LKCHQNGHPILHLAGRDFSVRSISYE+HSLRLSDHA+ +A+ECS LI++LSVL N
Sbjct: 62  YPGFQLKCHQNGHPILHLAGRDFSVRSISYEEHSLRLSDHAVSSAAECSALIRSLSVLTN 121

Query: 121 EWFHLAARQGGICSREESREEAERNGLVVEWTAGECKFCNKSGGFCGFDDSTHFFKCYCP 180
           E FHL   Q GIC  EESR+EAERNGLVVEWTAGEC+FCNKSGG+CGFDDSTHFFKCYCP
Sbjct: 122 ERFHLGDGQDGICGGEESRDEAERNGLVVEWTAGECRFCNKSGGYCGFDDSTHFFKCYCP 181

Query: 181 DRPHAFHCTPPPP 194
           DRPHAFHCTPPPP
Sbjct: 182 DRPHAFHCTPPPP 189

[Close]

BLAST of Lsi04G002350 vs. NCBI nr
Match: XP_011655783.1 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 4.7e-89
Identity = 154/191 (80.63%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MVSNLSIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCG 60
           MVSNL IFIFIL+ L P+ S+PSAAVD+HF+ C +PM+CGDNQTIQYPFYI NRQ SFCG
Sbjct: 1   MVSNLPIFIFILLLLFPDKSTPSAAVDFHFEDCRQPMTCGDNQTIQYPFYIQNRQQSFCG 60

Query: 61  YPGFKLKCHQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAILTASECSPLIQNLSVLAN 120
           YPGF+LKCHQNGHPIL+LAGRDFSVRSISYE+HSLRLSDHA+ +A+ECS LI+NLSVLAN
Sbjct: 61  YPGFQLKCHQNGHPILNLAGRDFSVRSISYEEHSLRLSDHAVSSAAECSSLIRNLSVLAN 120

Query: 121 EWFHLAARQGGICSREESREEAERNGLVVEWTAGECKFCNKSGGFCGFDDSTHFFKCYCP 180
           E F L   Q  IC  EESR+EAERNGL+VEWTAGECKFCNKSGG+CGFD+STHFFKCYCP
Sbjct: 121 ERFSLGDGQDRICDGEESRDEAERNGLIVEWTAGECKFCNKSGGYCGFDESTHFFKCYCP 180

Query: 181 DRPHAFHCTPP 192
           DRPHAFHCTPP
Sbjct: 181 DRPHAFHCTPP 191

[Close]

BLAST of Lsi04G002350 vs. NCBI nr
Match: KGN52102.1 (hypothetical protein Csa_009302 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 4.7e-89
Identity = 154/191 (80.63%), Postives = 172/191 (90.05%), Query Frame = 0


Query: 1   MVSNLSIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCG 60
           MVSNL IFIFIL+ L P+ S+PSAAVD+HF+ C +PM+CGDNQTIQYPFYI NRQ SFCG
Sbjct: 1   MVSNLPIFIFILLLLFPDKSTPSAAVDFHFEDCRQPMTCGDNQTIQYPFYIQNRQQSFCG 60

Query: 61  YPGFKLKCHQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAILTASECSPLIQNLSVLAN 120
           YPGF+LKCHQNGHPIL+LAGRDFSVRSISYE+HSLRLSDHA+ +A+ECS LI+NLSVLAN
Sbjct: 61  YPGFQLKCHQNGHPILNLAGRDFSVRSISYEEHSLRLSDHAVSSAAECSSLIRNLSVLAN 120

Query: 121 EWFHLAARQGGICSREESREEAERNGLVVEWTAGECKFCNKSGGFCGFDDSTHFFKCYCP 180
           E F L   Q  IC  EESR+EAERNGL+VEWTAGECKFCNKSGG+CGFD+STHFFKCYCP
Sbjct: 121 ERFSLGDGQDRICDGEESRDEAERNGLIVEWTAGECKFCNKSGGYCGFDESTHFFKCYCP 180

Query: 181 DRPHAFHCTPP 192
           DRPHAFHCTPP
Sbjct: 181 DRPHAFHCTPP 191

[Close]

BLAST of Lsi04G002350 vs. TAIR 10
Match: AT1G18390.2 (Protein kinase superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-16
Identity = 68/241 (28.22%), Postives = 98/241 (40.66%), Query Frame = 0


Query: 6   SIFIFILIFLAPETSSPSAAVDYHFKACSRPMSCGDNQTIQYPFYIHNRQDSFCGYPGFK 65
           SIF +  I +A +T S    +D  FKAC  P SCG    I YPFY+  +Q+SFCGYP F+
Sbjct: 12  SIFFYFTI-IATQTLS----LDPKFKAC-EPKSCGKGPQISYPFYLSGKQESFCGYPSFE 71

Query: 66  LKC-HQNGHPILHLAGRDFSVRSISYEDHSLRLSDHAI---------------LTASECS 125
           L C  +   P+L ++G ++ +++ISY   S ++ +                   T    +
Sbjct: 72  LTCDDEEKLPVLGISGEEYVIKNISYLTQSFQVVNSKASHDPCPRPLNNLTLHRTPFFVN 131

Query: 126 PLIQNLSVLANEWFHL----------------AARQGGICSREESREEAE---------- 184
           P   N ++L N   HL                  R  G+  R++  +E +          
Sbjct: 132 PSHINFTILYNCSDHLLEDFRTYPLTCARNTSLLRSFGVFDRKKLGKEKQIASMSCQKLV 191

[Close]

BLAST of Lsi04G002350 vs. TAIR 10
Match: AT1G66930.1 (Protein kinase superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 9.7e-08
Identity = 25/68 (36.76%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 31  KACSRPMSCGDNQTIQYPFYIHNRQDSFCGYPGFKLKCHQNGHPILHLAGRDFSVRSISY 90
           + CS   SCG+ + + YPF+I  R+  +CG+P FKL C   G   L++A  +F + ++SY
Sbjct: 69  RRCSERFSCGNQRNLYYPFWIPGRE--YCGHPDFKLDC-SGGFAELNIASVNFRILNMSY 128

Query: 91  EDHSLRLS 99
           +  + RL+
Sbjct: 129 DSSNKRLA 133

[Close]

BLAST of Lsi04G002350 vs. TAIR 10
Match: AT2G46495.1 (RING/U-box superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 5.9e-05
Identity = 26/73 (35.62%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 29  HFKACSRPMSCG-DNQTIQYPFYIHNRQDSFCGYPGFKLKCHQNGHPILHLAGR-DFSVR 88
           H + CS   SCG D+  +++PF++ ++Q   CG+ GF L+C  +    L L     F VR
Sbjct: 22  HPQQCS-SSSCGRDDVHVRFPFWLLSKQPELCGHAGFNLQCTASPKTALKLPNSGTFLVR 81

Query: 89  SISYEDHSLRLSD 100
            I Y    +RL D
Sbjct: 82  EIDYLSQQIRLYD 93

[Close]

BLAST of Lsi04G002350 vs. TAIR 10
Match: AT5G38260.1 (Protein kinase superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 5.0e-04
Identity = 16/34 (47.06%), Postives = 19/34 (55.88%), Query Frame = 0


Query: 155 ECKFCNKSGGFCGFDDSTHFFKCYCPDRPHAFHC 189
           +C  C  S G CGF+ S+  F CYC D PH   C
Sbjct: 225 DCSLCVASKGACGFNQSSKAFVCYCKDEPHEHTC 258

The following BLAST results are available for this feature:

BLAST of Lsi04G002350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C5E2	3.6e-15	28.22	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 OS=A...	[more]
F4HQ23	1.4e-06	36.76	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7 OS=A...	[more]
P0CH01	8.3e-04	35.62	Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A...	[more]

BLAST of Lsi04G002350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BFJ8	1.6e-90	80.41	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isof...	[more]
A0A1S3BF16	7.9e-90	80.31	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isof...	[more]
A0A0A0KUJ6	2.3e-89	80.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610365 PE=4 SV=1	[more]
A0A6J1HSS0	5.3e-78	76.17	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isof...	[more]
A0A6J1G210	6.9e-78	75.65	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isof...	[more]

BLAST of Lsi04G002350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892236.1	1.1e-93	85.34	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isof...	[more]
XP_008446632.1	3.3e-90	80.41	PREDICTED: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-li...	[more]
XP_008446630.1	1.6e-89	80.31	PREDICTED: LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-li...	[more]
XP_011655783.1	4.7e-89	80.63	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isof...	[more]
KGN52102.1	4.7e-89	80.63	hypothetical protein Csa_009302 [Cucumis sativus]	[more]

BLAST of Lsi04G002350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18390.2	2.5e-16	28.22	Protein kinase superfamily protein	[more]
AT1G66930.1	9.7e-08	36.76	Protein kinase superfamily protein	[more]
AT2G46495.1	5.9e-05	35.62	RING/U-box superfamily protein	[more]
AT5G38260.1	5.0e-04	47.06	Protein kinase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032872	Wall-associated receptor kinase, C-terminal	PFAM	PF14380	WAK_assoc	coord: 107..181 e-value: 2.4E-11 score: 44.3
IPR025287	Wall-associated receptor kinase, galacturonan-binding domain	PFAM	PF13947	GUB_WAK_bind	coord: 33..99 e-value: 6.5E-19 score: 68.1
None	No IPR available	PANTHER	PTHR33138	OS01G0690200 PROTEIN	coord: 141..190
None	No IPR available	PANTHER	PTHR33138:SF27	WALL-ASSOCIATED RECEPTOR KINASE GALACTURONAN-BINDING PROTEIN	coord: 141..190
None	No IPR available	PANTHER	PTHR33138	OS01G0690200 PROTEIN	coord: 3..132
None	No IPR available	PANTHER	PTHR33138:SF27	WALL-ASSOCIATED RECEPTOR KINASE GALACTURONAN-BINDING PROTEIN	coord: 3..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G002350.1	Lsi04G002350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030247	polysaccharide binding
molecular_function	GO:0004672	protein kinase activity