Lsi04G002210 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G002210
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPB1 domain-containing protein
Locationchr04: 2313360 .. 2316156 (+)
RNA-Seq ExpressionLsi04G002210
SyntenyLsi04G002210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGCTTGCTTGAATCCTTCGGAAGGCTATGGCTCATGTTGATGTATTCTAGCACTGAGCTGAAACCATTCGTTGTAGCTGATACAAATCTCTGCTGATTGATAATGTTCATATGCCTTATGGTGCTGGTCTCTTGATGGTTCGTCCCCGTTAACCTATCAATAATCAGATGATGAAGAAGATGGATACCTTCTTCAGAGAGGACCACACAATCGTCTTGGATTCCTTTGAAGAAAGGAGTACTAAGGTTTTTCTTGACTTGGTATTGAGCACTCTTTAGAAGGGTGCTCACTACTGACTTGTTTCCATTGATATCTTCCATTCTTTTGTGATAAAGTTTTTGTGAGGCTGCTTTATGTTCTGTGAAAGCTGTTCAACTTCCTTCCCAAATCTGTTCTTTCCTTCTTCATACCCTGTGCAAGGTACCTGTCGGCATTCGCAAGCTGTAAAGTATGGAATCTAATTAATGCACATATTCTAACTTGTAACATCTCATCGCTATTGTCATTTATTCTTTATTTGTTTTTTCATTAAAATGATATCAGAATCCAATCAAAGTTGATTTTTTTAGCAAGATCTCATTTGAAGATTATGATTGGACTGAAGTCTTGCTTTTGGTGAGATTATCAGCTAATTCAGGTGGGAATTTGGCAGTGTATTAACTACATCTTTGAAACTTTTCACATCTTGAAGTCTTAAATTTGCATGTGCCATCTGTAGCTGAAATGCTATAAGTTTCATGTGATTATCTGATATTTCAGTGGCTGGATTCCTTTCCGGATTGTCTTATAATATACAAATGTCAGGTTTAGTTTTTGGTGAAACTTTTATTACAATATGTACGAGGTTTGTTTTTGTTTTTGGAGATGGGGACAGGTTACAGAATTTATGACTCAGATAATCAAGTTTGCCACGTGGGTCTTAGCTAATCATGCTTGTCTTTGCTTCCTAAAGACGCTGATTTGCATTGTCATCATTTTCTCCTTTCATCTCCTTTACAATTTACTTCTATACAGAATTTTGGTTAAGGCACACTGATTATAGATCGTATTATTAACAAAAATTTGAAATTTCTGCAGATTTTCTTCAAGCAGTTGGCGAAATGATGCTGAAATCGAATCAAGGGGCTAATCGAATTTCAACTCAGATGTCCCATAAGCGACCAAGAACAAAGAATGGCACTTTTTGCAGGACATGTTTGGTGAGAATCGAAAATGAATTTAGGAATTCCACTAATTTTTGTCTAAAATCAGACGAAATCTTATTACAAAGGTTTCTACTGTTGAATTTCTCATCACAAGTTGATATGCGTATATTATACAATAGAACTCAAAGCCACCAAAGAACAATGATAAAAATTTGACTTTGGGATTTTTTAAAGGGTCCCTTCTCTCCATTTCAGTCCTTATCTATGATAAATCTAATATTCTATATAGGCAATGCAGGATCCACGTAAGAAAGCATTATTCAAAAGGGCGTTAATATGTGCGCGGACAAGACTTCGCCTCAATATTAGACTCATAAAAGCACCGATAATCATTTTAATTGGTTTATCTATCAATTGTTTAAGGACTTAGTTTCTTCTTTCCGATTGGCCAAGCCAACCTTCTTAGACAATGCTCTTAACACAATATCTTTGGCGACTGGTAAAGCTCTTACATTTCATTCTGACTATTCATTTATATAAAAAGGTATATTTGAATAAATCAACCCTGCTTAGATCATTCATGACTACATTTATTATAGTTGACAAGATTACCTAACTAAATGGATATAGACATAAATTACTATCGACGGTTGAATTTTCCACTTTTACAATTATTGAATTCAAAAAAAGAGGAAAAAAATCATTAGTTTTGAAGCAATTTTAAAATTAATATTTGTAATTAATGTGATGTGATCAATTCTTTTAACGAGAGTTTGACAAACATTGTATCAATTTTGGAGCAATTCATAAGATGATTATAAGTGAAGAAACTATTGGCATGTTTAAAAGTGATTATGAAGTTGTTAAAATCACTTTTGTTATTTTTAAAATCATTACAAAAATGTTTTAATTATTCAAAATCAATTTTAATAGTATGAAGAATTGCATTAAAAAAATATAAAATTAAATATTGAATTGATTTAGAGTAACTAAAGATGATTCTATACACCATTTTAACAATTTCAAAATTATATAGTATAATCCATTATTTGCTCCAAAAATGTTAGAAATGGAAATGGAAATAAATATACAGATCAGCAGCCCAAAGACGAGGGAAAAAAATGTATACTTTTTAACTTCTGCAATAAGTTAAGTGAGTGCTACTTTCTGTCGGGGCAAAATTGAAACTGACCATATTGTACAAAAACATGCAATATTCCAACCTATAATACAAATGTATTTTCCTTTTCATACAGAAACATTTACCTCAAACACTCTAACACAGTGGTCAGCGCCACAGGATGCAAGTTGCAGCTTCCTGCATTCTTCACCAATCTTCTCCGGTTCCTTCCATGCCAAACGGTTGACCGAGGAAACATGGCAAACAAATGGATCGAGGCGTATAGTGACCGAAGCAACTACATTTGAGCAAACATTATCTGTTCTTTTGATAGACAAACTCCACAACTCAAGGAGGCCATTTTCCATTCCAACTGCAAGGAATCCATTGTTTGTGGGATCAAGACCGACCCACGATAAAGCGGTGACACTAGATTTGAACTGTGACAAAGTTGTTAGCTGCTTAACTGAAGATTCAGCTGTCACAGCCCATATCTTCACAGTCTTATCTCTAGAGCCTGTTGCAAACTCA

mRNA sequence

TGGCTTGCTTGAATCCTTCGGAAGGCTATGGCTCATGTTGATGTATTCTAGCACTGAGCTGAAACCATTCGTTATGATGAAGAAGATGGATACCTTCTTCAGAGAGGACCACACAATCGTCTTGGATTCCTTTGAAGAAAGGAGTACTAAGAATCCAATCAAAGTTGATTTTTTTAGCAAGATCTCATTTGAAGATTATGATTGGACTGAAGTCTTGCTTTTGGTGAGATTATCAGCTAATTCAGATTTTCTTCAAGCAGTTGGCGAAATGATGCTGAAATCGAATCAAGGGGCTAATCGAATTTCAACTCAGATGTCCCATAAGCGACCAAGAACAAAGAATGGCACTTTTTGCAGGACATGTTTGGACTTAGTTTCTTCTTTCCGATTGGCCAAGCCAACCTTCTTAGACAATGCTCTTAACACAATATCTTTGGCGACTGAAACATTTACCTCAAACACTCTAACACAGTGGTCAGCGCCACAGGATGCAAGTTGCAGCTTCCTGCATTCTTCACCAATCTTCTCCGGTTCCTTCCATGCCAAACGGTTGACCGAGGAAACATGGCAAACAAATGGATCGAGGCGTATAGTGACCGAAGCAACTACATTTGAGCAAACATTATCTGTTCTTTTGATAGACAAACTCCACAACTCAAGGAGGCCATTTTCCATTCCAACTGCAAGGAATCCATTGTTTGTGGGATCAAGACCGACCCACGATAAAGCGGTGACACTAGATTTGAACTGTGACAAAGTTGTTAGCTGCTTAACTGAAGATTCAGCTGTCACAGCCCATATCTTCACAGTCTTATCTCTAGAGCCTGTTGCAAACTCA

Coding sequence (CDS)

ATGTTGATGTATTCTAGCACTGAGCTGAAACCATTCGTTATGATGAAGAAGATGGATACCTTCTTCAGAGAGGACCACACAATCGTCTTGGATTCCTTTGAAGAAAGGAGTACTAAGAATCCAATCAAAGTTGATTTTTTTAGCAAGATCTCATTTGAAGATTATGATTGGACTGAAGTCTTGCTTTTGGTGAGATTATCAGCTAATTCAGATTTTCTTCAAGCAGTTGGCGAAATGATGCTGAAATCGAATCAAGGGGCTAATCGAATTTCAACTCAGATGTCCCATAAGCGACCAAGAACAAAGAATGGCACTTTTTGCAGGACATGTTTGGACTTAGTTTCTTCTTTCCGATTGGCCAAGCCAACCTTCTTAGACAATGCTCTTAACACAATATCTTTGGCGACTGAAACATTTACCTCAAACACTCTAACACAGTGGTCAGCGCCACAGGATGCAAGTTGCAGCTTCCTGCATTCTTCACCAATCTTCTCCGGTTCCTTCCATGCCAAACGGTTGACCGAGGAAACATGGCAAACAAATGGATCGAGGCGTATAGTGACCGAAGCAACTACATTTGAGCAAACATTATCTGTTCTTTTGATAGACAAACTCCACAACTCAAGGAGGCCATTTTCCATTCCAACTGCAAGGAATCCATTGTTTGTGGGATCAAGACCGACCCACGATAAAGCGGTGACACTAGATTTGAACTGTGACAAAGTTGTTAGCTGCTTAACTGAAGATTCAGCTGTCACAGCCCATATCTTCACAGTCTTATCTCTAGAGCCTGTTGCAAACTCA

Protein sequence

MLMYSSTELKPFVMMKKMDTFFREDHTIVLDSFEERSTKNPIKVDFFSKISFEDYDWTEVLLLVRLSANSDFLQAVGEMMLKSNQGANRISTQMSHKRPRTKNGTFCRTCLDLVSSFRLAKPTFLDNALNTISLATETFTSNTLTQWSAPQDASCSFLHSSPIFSGSFHAKRLTEETWQTNGSRRIVTEATTFEQTLSVLLIDKLHNSRRPFSIPTARNPLFVGSRPTHDKAVTLDLNCDKVVSCLTEDSAVTAHIFTVLSLEPVANS
Homology
[Close]
BLAST of Lsi04G002210 vs. ExPASy TrEMBL
Match: A0A6A6N050 (PB1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_041128 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.0e-07
Identity = 45/89 (50.56%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 176 ETWQTNGSRRIVTEATTFEQTLSVLLIDKLHNSRRPFSIPTARNPL--FVGSRPTHDKAV 235
           ETW    S   V  A T     S LLI +LH+S    SIPTA+ PL  F        KAV
Sbjct: 590 ETWHMRESSPRVRAAATSGTVYSDLLIARLHSSMSLSSIPTAKKPLVSFDDQLQPKKKAV 649

Query: 236 TLDLNCDKVVSCLTEDSAVTAHIFTVLSL 263
           TL LNC KVV+CLTEDS   A I T+LSL
Sbjct: 650 TLLLNCGKVVNCLTEDSLSMAQISTLLSL 678

[Close]
BLAST of Lsi04G002210 vs. NCBI nr
Match: KAF2317813.1 (hypothetical protein GH714_041128 [Hevea brasiliensis])

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-07
Identity = 45/89 (50.56%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 176 ETWQTNGSRRIVTEATTFEQTLSVLLIDKLHNSRRPFSIPTARNPL--FVGSRPTHDKAV 235
           ETW    S   V  A T     S LLI +LH+S    SIPTA+ PL  F        KAV
Sbjct: 590 ETWHMRESSPRVRAAATSGTVYSDLLIARLHSSMSLSSIPTAKKPLVSFDDQLQPKKKAV 649

Query: 236 TLDLNCDKVVSCLTEDSAVTAHIFTVLSL 263
           TL LNC KVV+CLTEDS   A I T+LSL
Sbjct: 650 TLLLNCGKVVNCLTEDSLSMAQISTLLSL 678

The following BLAST results are available for this feature:
BLAST of Lsi04G002210 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi04G002210 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A6N0501.0e-0750.56PB1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_041128 PE=4... [more]
BLAST of Lsi04G002210 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF2317813.12.1e-0750.56hypothetical protein GH714_041128 [Hevea brasiliensis][more]
BLAST of Lsi04G002210 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G002210.1Lsi04G002210.1mRNA