Lsi04G002160 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G002160
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Rad60-SLD domain-containing protein
Location	chr04: 2266091 .. 2268645 (-)
RNA-Seq Expression	Lsi04G002160
Synteny	Lsi04G002160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAACTAAAAAAGAAAGAAAGAGAATTTCTAGAGGCGTCTCGCTAGGTAACGCTTCGACGGTGAACGGACAGTGATTTTGAATTTCCCGGCCGAATACGACGAATATTGATCGAAGAAGAACCCGAAGAGTTTAGGTTTCGAGGTCTTTGATAATGGCGAGTCTCTTTCTCTCTTTAATTTCACGGGCAGGGGACGCTTTTCCGTACCATTTCCACTCCTGTTTTACCCTCCTCTCTCACTTATCAATTCTTACTTTGAGTTTTTATTTTCAGGCCGATTCCGCTGAAGAATTTGAGCCCTTGTTCGATTACAGCCGTGTTCAGCCTCGCTCCCTTGTTTTTCTCGATGGTAATAGTTCTCAACGATATTGGAATTTCACGAAAGTCGGAACTTTCTATATCATCGTGTTTGATGTATTTATAATTCTCGTTTGAGCAAGAAATTTCGAAATTGAGTTTCCTTGTGCTTGAAGTCTTCCAAACCGATGGTAATTTTGTGCTTTGTTTTTCTTCTATTTGGAATAACAACATTAGACGAGGATTCAGACGCAGACAAATCTCCGGCACCTTTTTCAAAGCGAGTGAAGATTGTAAATCCGGCGGTATATTATTCCCTTCGTGTAGTGAAATAGTAGACTTTCTGATTTCTTATGATTAATGTTTCGTTGGCACAGTTAGTAAAGCTGGTTTTTTATGATCATTTCCTTTCAATCAATATTTAGGTTACGAATTTGGTGAATGGTAACCCAAAGGAGAAACAAGTGGAAATTGAAGATAAAGAGGAAGATTGGCTACCTCCTCCACCGAAGGTGTCAGTTGATGCAAAGAATATGTGTGGGGAAGATTCCACATTGAAGGAGTTAAGGTATTCCAACTTAGTGGTATGCATCTATTGTTTGGTTAATCCATTAATATATGAAACTGGAACTCTTGTTCGTTCTGTCCATAAGCTGCCATGGCATGTGTTTCATGCCATTTTGCCTTTGTATATCATGTGTAATCTGCACTGATAGGTTAAAGAAGCAAGAGTTGGCCTCTGTTGCTTTATCGGCTAAAAACTTGTTGCGAGAAGTGGAGGAATCTGCAAAAGTAGATGTTGGAAACACGCCCCAGGACTCCCTGGAGCCTGATTTGGATGACCAAACTCCAATTGCTTCTAAAGAAAGAGCAAAGATTGTTATTTCTGTACGAGACAGTGACAAGGAAGAGCTCAAACAGTTTCGCCTGTTTGTGGTATGTTCTTGTGCATGTCTGCGTGTTATCCACAACTCAGAAGTCGCCTTATTCACTTGCAACCAAACTGTTTTGTCAATACATGTCATGGTTTGCGATCACTGTTTTTGATATGCGTGCGAGATGCCTTTTATTTGCCCTGTACTCGTGCATTAGTAAGCATGTTTAGATATAGGGAAATGAATGAATGAATGAATGTGATGAAGTTGATTTGACTAGTAAGAGTGAGAATAGGAAATAAGTATGGTCTATGGTAAGCGAATTTTGAAAACATTGATTAGTACAAAAGTGGGTTTTGCGGAAAACTGTAATTTTTCAATTGATTGTTAAAAAGCAGAACAAATTTACCTTTCTCATTTGAATTCCCAACTTTTCTGAGTAGTCTTTTTATTATGTAGGAAAAAAGTATGATTCAGATCTTGGTTATTTTCTAGTTGTCAATAGTGATTAGCCACACATACCCTTTATTTTGATTTTCTTGTACTTCCCTTCCACATCATGATTGCCTTAACTTTGTTTTGTGATGATCATTAGACTTGAAGTTGAATGAAGATGTTGGATGTTACTTTTGTTACGTAGTGTTCTGTGTACAGTATCTGCGATCATGAATGTGGCTGTTTTAGAACAATGGGTCTTTCTATGATTCATCCACATTTAGGCTATGGTGAAAGTACTATAGGTCTCCCATGGTGATGATACTTCAGATGTTATTTGATTGATTTACTTTAGGAGAAACTCCCTGATCATAGTACAAAATATAATGCACCGGGCCTTGTTCAATAGGTCTCACTCTATTCTTATCTTCATATTTTCTGTCTTCATATAACCCTGCAGGCCAAGGTATTCTGTATATTTAACTTATGATGTGAGTGTGACACTTCTAAAAGTGTTCCAACATACTCTAATATGGTTTTGATTTTTGAATTTTAATGTTTGTATAGGATGACAAGTTTGAGCGACTTTTCAACATTTATGCGGACAAGCTTAAAATCGTCGACCCTAAGAGTTTGGTTTTCATTTTTGACGGGGATAAAGTCGGCCCAGACGATACCCCAGTTGGCCTTGGCATGGAAGACGATGATATGATCGAAGTGAACATCAAGTCGAGTTGAGTAAGGTGTCTTTTCAATGTATATTTTGTGAATTAGTTCACCAGTTTTGGGGATAGGAGACTTGGAAAAGGCCAAATTCAATATTTTGTACCATAAGATGAACAAATCCTTATGGAAGGCTGTGAAGGTTCCTTTTGTCCGGTAAATTTTTTTGGTAAGCACATTGAGATGAATGAAAAAAATAAAAATGATATCAAATTCATTTGT

mRNA sequence

AAAAAAACTAAAAAAGAAAGAAAGAGAATTTCTAGAGGCGTCTCGCTAGGTAACGCTTCGACGGTGAACGGACAGTGATTTTGAATTTCCCGGCCGAATACGACGAATATTGATCGAAGAAGAACCCGAAGAGTTTAGGTTTCGAGGTCTTTGATAATGGCCGATTCCGCTGAAGAATTTGAGCCCTTGTTCGATTACAGCCGTGTTCAGCCTCGCTCCCTTGTTTTTCTCGATGACGAGGATTCAGACGCAGACAAATCTCCGGCACCTTTTTCAAAGCGAGTGAAGATTGTAAATCCGGCGGTTACGAATTTGGTGAATGGTAACCCAAAGGAGAAACAAGTGGAAATTGAAGATAAAGAGGAAGATTGGCTACCTCCTCCACCGAAGGTGTCAGTTGATGCAAAGAATATGTGTGGGGAAGATTCCACATTGAAGGAGTTAAGGTATTCCAACTTAGTGGTATGCATCTATTGTTTGGTTAATCCATTAATATATGAAACTGGAACTCTTGTTCGTTCTGTCCATAAGCTGCCATGGCATGTGTTTCATGCCATTTTGCCTTTGTATATCATGTTAAAGAAGCAAGAGTTGGCCTCTGTTGCTTTATCGGCTAAAAACTTGTTGCGAGAAGTGGAGGAATCTGCAAAAGTAGATGTTGGAAACACGCCCCAGGACTCCCTGGAGCCTGATTTGGATGACCAAACTCCAATTGCTTCTAAAGAAAGAGCAAAGATTGTTATTTCTGTACGAGACAGTGACAAGGAAGAGCTCAAACAGTTTCGCCTGTTTGTGGATGACAAGTTTGAGCGACTTTTCAACATTTATGCGGACAAGCTTAAAATCGTCGACCCTAAGAGTTTGGTTTTCATTTTTGACGGGGATAAAGTCGGCCCAGACGATACCCCAGTTGGCCTTGGCATGGAAGACGATGATATGATCGAAGTGAACATCAAGTCGAGTTGAGTAAGGTGTCTTTTCAATGTATATTTTGTGAATTAGTTCACCAGTTTTGGGGATAGGAGACTTGGAAAAGGCCAAATTCAATATTTTGTACCATAAGATGAACAAATCCTTATGGAAGGCTGTGAAGGTTCCTTTTGTCCGGTAAATTTTTTTGGTAAGCACATTGAGATGAATGAAAAAAATAAAAATGATATCAAATTCATTTGT

Coding sequence (CDS)

ATGGCCGATTCCGCTGAAGAATTTGAGCCCTTGTTCGATTACAGCCGTGTTCAGCCTCGCTCCCTTGTTTTTCTCGATGACGAGGATTCAGACGCAGACAAATCTCCGGCACCTTTTTCAAAGCGAGTGAAGATTGTAAATCCGGCGGTTACGAATTTGGTGAATGGTAACCCAAAGGAGAAACAAGTGGAAATTGAAGATAAAGAGGAAGATTGGCTACCTCCTCCACCGAAGGTGTCAGTTGATGCAAAGAATATGTGTGGGGAAGATTCCACATTGAAGGAGTTAAGGTATTCCAACTTAGTGGTATGCATCTATTGTTTGGTTAATCCATTAATATATGAAACTGGAACTCTTGTTCGTTCTGTCCATAAGCTGCCATGGCATGTGTTTCATGCCATTTTGCCTTTGTATATCATGTTAAAGAAGCAAGAGTTGGCCTCTGTTGCTTTATCGGCTAAAAACTTGTTGCGAGAAGTGGAGGAATCTGCAAAAGTAGATGTTGGAAACACGCCCCAGGACTCCCTGGAGCCTGATTTGGATGACCAAACTCCAATTGCTTCTAAAGAAAGAGCAAAGATTGTTATTTCTGTACGAGACAGTGACAAGGAAGAGCTCAAACAGTTTCGCCTGTTTGTGGATGACAAGTTTGAGCGACTTTTCAACATTTATGCGGACAAGCTTAAAATCGTCGACCCTAAGAGTTTGGTTTTCATTTTTGACGGGGATAAAGTCGGCCCAGACGATACCCCAGTTGGCCTTGGCATGGAAGACGATGATATGATCGAAGTGAACATCAAGTCGAGTTGA

Protein sequence

MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKEKQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLVRSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDLDDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS

Homology

[Close]

BLAST of Lsi04G002160 vs. ExPASy TrEMBL
Match: A0A0A0KWH7 (Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 7.0e-97
Identity = 202/269 (75.09%), Postives = 210/269 (78.07%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKE 60
           MADSAEEFEPLFDYSRVQP S+V LDDEDSDADKSPAPF+KR KIVNPA T+ VNGNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLV 120
           KQVEIEDKEEDWLPPPPKV VDA+N   EDSTLKELR                       
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELR----------------------- 120

Query: 121 RSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDL 180
                               LKKQELASVALSAKNLLREVEESAKVDVGNT  D LEPDL
Sbjct: 121 --------------------LKKQELASVALSAKNLLREVEESAKVDVGNTSMDPLEPDL 180

Query: 181 DDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIF 240
           D QTP+ASKERAKIVISVRDSDKEELKQ+RLFVDDKFERLF +YADKLKI DPKSLVF+F
Sbjct: 181 DVQTPVASKERAKIVISVRDSDKEELKQYRLFVDDKFERLFKLYADKLKI-DPKSLVFVF 225

Query: 241 DGDKVGPDDTPVGLGMEDDDMIEVNIKSS 270
           DGDKVGPDDTP GLGMEDDDMIEVNIKSS
Sbjct: 241 DGDKVGPDDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Lsi04G002160 vs. ExPASy TrEMBL
Match: A0A5A7SVU4 (Putative Ubiquitin-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001350 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 7.3e-94
Identity = 196/269 (72.86%), Postives = 206/269 (76.58%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKE 60
           MADSAEEFEPLFDYSRVQP S+V LDDEDSDADKSPAPF+KR KI N A T+ VNGNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIANLAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLV 120
           KQVEIED EEDWLPPPPKV VD  N  GEDSTLKELR                       
Sbjct: 61  KQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELR----------------------- 120

Query: 121 RSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDL 180
                               LKKQELASVALSAKNLLREVEESAKVDVGNT +DSLEPDL
Sbjct: 121 --------------------LKKQELASVALSAKNLLREVEESAKVDVGNTSKDSLEPDL 180

Query: 181 DDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIF 240
           D QTP+ SKERAKIVISVRDSDKEELKQ+RLFVDD FERLF IYADKLKI DP+SLVF+F
Sbjct: 181 DVQTPVVSKERAKIVISVRDSDKEELKQYRLFVDDNFERLFKIYADKLKI-DPESLVFVF 225

Query: 241 DGDKVGPDDTPVGLGMEDDDMIEVNIKSS 270
           DGDK+GP+DTP GLGMEDDDMIEVNIKSS
Sbjct: 241 DGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Lsi04G002160 vs. ExPASy TrEMBL
Match: A0A1S3BF31 (uncharacterized protein LOC103489317 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489317 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 7.3e-94
Identity = 196/269 (72.86%), Postives = 206/269 (76.58%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKE 60
           MADSAEEFEPLFDYSRVQP S+V LDDEDSDADKSPAPF+KR KI N A T+ VNGNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIANLAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLV 120
           KQVEIED EEDWLPPPPKV VD  N  GEDSTLKELR                       
Sbjct: 61  KQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELR----------------------- 120

Query: 121 RSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDL 180
                               LKKQELASVALSAKNLLREVEESAKVDVGNT +DSLEPDL
Sbjct: 121 --------------------LKKQELASVALSAKNLLREVEESAKVDVGNTSKDSLEPDL 180

Query: 181 DDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIF 240
           D QTP+ SKERAKIVISVRDSDKEELKQ+RLFVDD FERLF IYADKLKI DP+SLVF+F
Sbjct: 181 DVQTPVVSKERAKIVISVRDSDKEELKQYRLFVDDNFERLFKIYADKLKI-DPESLVFVF 225

Query: 241 DGDKVGPDDTPVGLGMEDDDMIEVNIKSS 270
           DGDK+GP+DTP GLGMEDDDMIEVNIKSS
Sbjct: 241 DGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Lsi04G002160 vs. ExPASy TrEMBL
Match: A0A6J1JEF8 (uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 6.2e-93
Identity = 193/269 (71.75%), Postives = 208/269 (77.32%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKE 60
           MAD AEEFEPLF+YSRV PRS+  LD+EDSDA  SP PFSKR +I+NPAVT+LV+GNPKE
Sbjct: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLV 120
           KQVEIED+EEDWLPPPPKVSVDAKNMCGEDSTLKELR                       
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELR----------------------- 120

Query: 121 RSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDL 180
                               L K ELASV LSAKNLLREVEESAK+DVGNTPQD LEP L
Sbjct: 121 --------------------LMKLELASVTLSAKNLLREVEESAKMDVGNTPQDPLEPAL 180

Query: 181 DDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIF 240
           DDQ PIASKERAKIVISVRDSDKEELKQFR+F+DDKFERLF +YA+K KI DPKSLVFIF
Sbjct: 181 DDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKMYAEKRKI-DPKSLVFIF 225

Query: 241 DGDKVGPDDTPVGLGMEDDDMIEVNIKSS 270
           DGDKVGPDDTPVGLGMEDDDMI+VNI+ S
Sbjct: 241 DGDKVGPDDTPVGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of Lsi04G002160 vs. ExPASy TrEMBL
Match: A0A6J1H158 (uncharacterized protein LOC111458628 OS=Cucurbita moschata OX=3662 GN=LOC111458628 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 3.1e-92
Identity = 194/269 (72.12%), Postives = 207/269 (76.95%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKE 60
           MAD AEEFEPLFDYSRVQPRS+  LDDEDSDA  SP PFSKR +I+NPAVT+LV+G  K+
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGIRKD 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLV 120
           KQVEIED+EEDWLPPPPKVSVDAKNMCGEDSTLKELR                       
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELR----------------------- 120

Query: 121 RSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDL 180
                               L K ELASVALSAKNLLREVEESAK+DVGNTPQD LEP L
Sbjct: 121 --------------------LMKLELASVALSAKNLLREVEESAKMDVGNTPQDPLEPAL 180

Query: 181 DDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIF 240
           DDQ PIASKERAKIVISVRDSDKEELKQFRLF+DDKFERLF +YA+K KI DPKSLVFIF
Sbjct: 181 DDQIPIASKERAKIVISVRDSDKEELKQFRLFMDDKFERLFKMYAEKRKI-DPKSLVFIF 225

Query: 241 DGDKVGPDDTPVGLGMEDDDMIEVNIKSS 270
           DGDKV PDDTP GLGMEDDDMI+VNI+SS
Sbjct: 241 DGDKVSPDDTPTGLGMEDDDMIDVNIRSS 225

[Close]

BLAST of Lsi04G002160 vs. NCBI nr
Match: XP_038891511.1 (uncharacterized protein LOC120080907 [Benincasa hispida])

HSP 1 Score: 372.9 bits (956), Expect = 2.4e-99
Identity = 207/269 (76.95%), Postives = 215/269 (79.93%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKE 60
           MADSAEEFEPLFDYSRVQPRS+V LDDEDSDADKSPAPFSKRVKIVNPA T+LV+ NPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPRSVVCLDDEDSDADKSPAPFSKRVKIVNPAATSLVDSNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLV 120
           KQVEIEDKEEDWLPPPPKV VDA+NMCGEDSTLKELR                       
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENMCGEDSTLKELR----------------------- 120

Query: 121 RSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDL 180
                               LKKQELASVALSAKNLLREVEESAKVDVGN P DSLEPDL
Sbjct: 121 --------------------LKKQELASVALSAKNLLREVEESAKVDVGNKP-DSLEPDL 180

Query: 181 DDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIF 240
           D QTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLF +YADK KI DPK+L+F+F
Sbjct: 181 DVQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFKMYADKHKI-DPKNLIFVF 224

Query: 241 DGDKVGPDDTPVGLGMEDDDMIEVNIKSS 270
           DGDKVGPDDTPV LGMEDDDMIEVNIKSS
Sbjct: 241 DGDKVGPDDTPVSLGMEDDDMIEVNIKSS 224

[Close]

BLAST of Lsi04G002160 vs. NCBI nr
Match: XP_004135076.1 (uncharacterized protein LOC101214853 [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 1.5e-96
Identity = 202/269 (75.09%), Postives = 210/269 (78.07%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKE 60
           MADSAEEFEPLFDYSRVQP S+V LDDEDSDADKSPAPF+KR KIVNPA T+ VNGNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLV 120
           KQVEIEDKEEDWLPPPPKV VDA+N   EDSTLKELR                       
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELR----------------------- 120

Query: 121 RSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDL 180
                               LKKQELASVALSAKNLLREVEESAKVDVGNT  D LEPDL
Sbjct: 121 --------------------LKKQELASVALSAKNLLREVEESAKVDVGNTSMDPLEPDL 180

Query: 181 DDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIF 240
           D QTP+ASKERAKIVISVRDSDKEELKQ+RLFVDDKFERLF +YADKLKI DPKSLVF+F
Sbjct: 181 DVQTPVASKERAKIVISVRDSDKEELKQYRLFVDDKFERLFKLYADKLKI-DPKSLVFVF 225

Query: 241 DGDKVGPDDTPVGLGMEDDDMIEVNIKSS 270
           DGDKVGPDDTP GLGMEDDDMIEVNIKSS
Sbjct: 241 DGDKVGPDDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Lsi04G002160 vs. NCBI nr
Match: XP_008446647.1 (PREDICTED: uncharacterized protein LOC103489317 isoform X1 [Cucumis melo] >KAA0034593.1 putative Ubiquitin-like superfamily protein [Cucumis melo var. makuwa] >TYK09144.1 putative Ubiquitin-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 353.6 bits (906), Expect = 1.5e-93
Identity = 196/269 (72.86%), Postives = 206/269 (76.58%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKE 60
           MADSAEEFEPLFDYSRVQP S+V LDDEDSDADKSPAPF+KR KI N A T+ VNGNPKE
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIANLAATSSVNGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLV 120
           KQVEIED EEDWLPPPPKV VD  N  GEDSTLKELR                       
Sbjct: 61  KQVEIEDNEEDWLPPPPKVLVDGNNRRGEDSTLKELR----------------------- 120

Query: 121 RSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDL 180
                               LKKQELASVALSAKNLLREVEESAKVDVGNT +DSLEPDL
Sbjct: 121 --------------------LKKQELASVALSAKNLLREVEESAKVDVGNTSKDSLEPDL 180

Query: 181 DDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIF 240
           D QTP+ SKERAKIVISVRDSDKEELKQ+RLFVDD FERLF IYADKLKI DP+SLVF+F
Sbjct: 181 DVQTPVVSKERAKIVISVRDSDKEELKQYRLFVDDNFERLFKIYADKLKI-DPESLVFVF 225

Query: 241 DGDKVGPDDTPVGLGMEDDDMIEVNIKSS 270
           DGDK+GP+DTP GLGMEDDDMIEVNIKSS
Sbjct: 241 DGDKIGPNDTPGGLGMEDDDMIEVNIKSS 225

[Close]

BLAST of Lsi04G002160 vs. NCBI nr
Match: XP_023553495.1 (uncharacterized protein LOC111810893 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351.3 bits (900), Expect = 7.5e-93
Identity = 194/269 (72.12%), Postives = 208/269 (77.32%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKE 60
           MAD AEEFEPLFDYSRVQPRS+  LDDEDSDA  SP PFSKR +I+NPAVT+LV+GNPKE
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLV 120
           KQVEI D+EEDWLPPPPKV VDAKNMCGEDSTLKELR                       
Sbjct: 61  KQVEIVDEEEDWLPPPPKVLVDAKNMCGEDSTLKELR----------------------- 120

Query: 121 RSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDL 180
                               LKK ELA VALSAKNLLREVEESAK+DVGNTPQD LEP L
Sbjct: 121 --------------------LKKLELALVALSAKNLLREVEESAKMDVGNTPQDPLEPAL 180

Query: 181 DDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIF 240
           DDQ PIASKERAKIVISVRDS+KEELKQFRLF+DDKFERLF +YA+K KI DPKSLVFIF
Sbjct: 181 DDQIPIASKERAKIVISVRDSEKEELKQFRLFMDDKFERLFKMYAEKRKI-DPKSLVFIF 225

Query: 241 DGDKVGPDDTPVGLGMEDDDMIEVNIKSS 270
           DGDKVGPDDTP+GLGMEDDDMI+VNI+ S
Sbjct: 241 DGDKVGPDDTPIGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of Lsi04G002160 vs. NCBI nr
Match: XP_022985708.1 (uncharacterized protein LOC111483658 [Cucurbita maxima])

HSP 1 Score: 350.5 bits (898), Expect = 1.3e-92
Identity = 193/269 (71.75%), Postives = 208/269 (77.32%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKE 60
           MAD AEEFEPLF+YSRV PRS+  LD+EDSDA  SP PFSKR +I+NPAVT+LV+GNPKE
Sbjct: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLV 120
           KQVEIED+EEDWLPPPPKVSVDAKNMCGEDSTLKELR                       
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELR----------------------- 120

Query: 121 RSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDL 180
                               L K ELASV LSAKNLLREVEESAK+DVGNTPQD LEP L
Sbjct: 121 --------------------LMKLELASVTLSAKNLLREVEESAKMDVGNTPQDPLEPAL 180

Query: 181 DDQTPIASKERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLVFIF 240
           DDQ PIASKERAKIVISVRDSDKEELKQFR+F+DDKFERLF +YA+K KI DPKSLVFIF
Sbjct: 181 DDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKMYAEKRKI-DPKSLVFIF 225

Query: 241 DGDKVGPDDTPVGLGMEDDDMIEVNIKSS 270
           DGDKVGPDDTPVGLGMEDDDMI+VNI+ S
Sbjct: 241 DGDKVGPDDTPVGLGMEDDDMIDVNIRPS 225

[Close]

BLAST of Lsi04G002160 vs. TAIR 10
Match: AT1G68185.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 2.2e-34
Identity = 103/272 (37.87%), Postives = 142/272 (52.21%), Query Frame = 0


Query: 1   MADSAEEFEPLFDYSRVQPRSLVFLDDEDSDADKSPAPFSKRVKIVNPAVTNLVNGNPKE 60
           M    E+ EPLFDY RVQP + V +DD+D DA  +P P  K+ K  +  V  L   +   
Sbjct: 1   MGGEGEDLEPLFDYRRVQPANFVCIDDDDDDASVTPIP--KKAK-TSQTVEKL---DDDV 60

Query: 61  KQVEIEDKEEDWLPPPPKVSVDAKNMCGEDSTLKELRYSNLVVCIYCLVNPLIYETGTLV 120
           K +E+   ++DWL PPPKV  D      EDST+K LR                       
Sbjct: 61  KVIEVTG-DDDWLLPPPKVIFDKSKDSVEDSTIKALR----------------------- 120

Query: 121 RSVHKLPWHVFHAILPLYIMLKKQELASVALSAKNLLREVEESAKVDVGNTPQDSLEPDL 180
                                KK EL S   +  ++++EVEESAK +V    ++S  P  
Sbjct: 121 --------------------SKKMELMSFTKTVGDVMQEVEESAKREV----EESRNPSS 180

Query: 181 DDQTPIASK---ERAKIVISVRDSDKEELKQFRLFVDDKFERLFNIYADKLKIVDPKSLV 240
           +    + S+   +RAKIVI+++D D +  K  R+F D+KFER+  +Y DK K+ DP++LV
Sbjct: 181 ETAAQLPSEPTNDRAKIVITIQDKDGQ--KTLRVFADEKFERVIKLYTDKAKL-DPQNLV 215

Query: 241 FIFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 270
           FIFDGDK+ P  TP  LGMED DMIEV+ K +
Sbjct: 241 FIFDGDKIDPSTTPSELGMEDHDMIEVHTKKT 215

[Close]

BLAST of Lsi04G002160 vs. TAIR 10
Match: AT5G55160.2 (small ubiquitin-like modifier 2 )

HSP 1 Score: 43.1 bits (100), Expect = 4.1e-04
Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 171 TPQDSLEPDLDDQTPIASKERAKIVIS---VRDSDKEELKQFRLFVDDKFERLFNIYADK 230
           TP++  +PD      +  K +A  V+    V D+D  E+  FR+    + ++L N Y D+
Sbjct: 4   TPEEDKKPDQGAHINLKVKGQAFFVVGTWLVIDTDGNEV-FFRIKRSTQLKKLMNAYCDR 63

Query: 231 LKIVDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIE 264
            + VD  S+ F+FDG ++  + TP  L MED D I+
Sbjct: 64  -QSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEID 97

The following BLAST results are available for this feature:

BLAST of Lsi04G002160 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G002160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWH7	7.0e-97	75.09	Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 P...	[more]
A0A5A7SVU4	7.3e-94	72.86	Putative Ubiquitin-like superfamily protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BF31	7.3e-94	72.86	uncharacterized protein LOC103489317 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1JEF8	6.2e-93	71.75	uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658...	[more]
A0A6J1H158	3.1e-92	72.12	uncharacterized protein LOC111458628 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]

BLAST of Lsi04G002160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891511.1	2.4e-99	76.95	uncharacterized protein LOC120080907 [Benincasa hispida]	[more]
XP_004135076.1	1.5e-96	75.09	uncharacterized protein LOC101214853 [Cucumis sativus]	[more]
XP_008446647.1	1.5e-93	72.86	PREDICTED: uncharacterized protein LOC103489317 isoform X1 [Cucumis melo] >KAA00...	[more]
XP_023553495.1	7.5e-93	72.12	uncharacterized protein LOC111810893 [Cucurbita pepo subsp. pepo]	[more]
XP_022985708.1	1.3e-92	71.75	uncharacterized protein LOC111483658 [Cucurbita maxima]	[more]

BLAST of Lsi04G002160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68185.1	2.2e-34	37.87	Ubiquitin-like superfamily protein	[more]
AT5G55160.2	4.1e-04	33.33	small ubiquitin-like modifier 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022617	Rad60/SUMO-like domain	PFAM	PF11976	Rad60-SLD	coord: 194..266 e-value: 1.7E-11 score: 43.8
None	No IPR available	GENE3D	3.10.20.90		coord: 181..266 e-value: 1.7E-18 score: 68.6
None	No IPR available	PANTHER	PTHR47813	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 139..269 coord: 1..99
None	No IPR available	CDD	cd01763	Ubl_SUMO_like	coord: 193..264 e-value: 1.99878E-20 score: 80.7021
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 182..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G002160.1	Lsi04G002160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding