Lsi04G001750 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AATTATTTGAAAAAATATAGAAATTTTTTGCCTCATAAGAGAATTCGGTGGATGGAACTGTATTTTTCTATGCGATTTAGACGTAACGTGTGATAAACCAAACCACTGGCTCTCATATGGACCCAAAGTTTCAATTCACTCAAAAATCGCTAAATCGCAATGGCGTTCTATAAAACGAAACCTCACTCTTTTTGCCTCCAATGCCGTTTCAGATTTCTACACACTTCTTCTGGAGCTTTTTCCCCTCTGAGTCTCGGCGGCGATGGACGTTTTATCGGCGTTTCTCTTCCCTCCGCCTCCTTCCACGTTCGTCAACGTCATGACAGTGGTGAGCTCGACCGCGATGGCTGTGGCTGGAATTTCCGAGATTAACGGTAAGCATTTGCAGTATTCCAAGTTCTGGAATGCGAATACTGTTCCGAAACCTTCATCTGAAGAAACTAAGCTTTCTTCCAAATACGGAATGCTCTTGGCTTATACTCCGGCGTTTCTCGCTGGTGCGGCGTCGTTTTGGCTCTTTCCGAGCGGCGAGGAAAGGATTCTTTTGCTTAAATCTGCTTTAACTCTCCATTTCTTCAAGAGGATCTTTGAGGTATTCTCTCTTTTTTTCTCTACGCTTCTGATTGAGTTCTGAAATTTCAAATCTGATTCTGGAAATAGGTATTATAGAATGCAGTTTCTTCTATGATGTTCTTGAATAGCATCCTCGTAAAATTATTTGTTCGAATCGATTCTGGATTTATTGAGAACGTGTTAATCTTATTCTTCGAAAATTTCTCGTGTTCTTGAAAACCGTCTGAAAATTCGCGGCGAAGAGAAAATTGTGGAGAGATCTGCATCTCTTCTTCCTTCTCTGCATCTTATAATTCCTTTGGAGATTTCAAGTTTGGACTTCTTTGTTTACGGAATTAGGAAGACTTTTAACCTAACTTGATTTTTTTAATTAATTGTTTGTATTATGAATTTTTTTAGTACAGTGGGGGGGGGGGGGGGGGGGGGGGGGTTCGAACTCGACCTACCTATGCTCGCAATCCGAGTTTATTAATTTTTCTCTTTGACTAATTGAATTATCATTAAGATACTCTATGAGTCTACTTTGTATAGAATAATTAAAATTATTATTATATGTAGTCTGTTTAAGAAAGAAACAAACAACACGATTCTGTTCAACAGATCTCTAAAAATTCTGTTTCACTAATCACGATATGATTTGCTAGTCTTATACCTTTCATTTGTGGAACTATTATTTTGCAAACTATTCAAGGATTCTTTTCTTTTTCTTTTTCTTTCTTCAATCCGTTGTCGTTGAAGGATTGAACCATGAAAGTTTGAAATGATAATAGATATTTGGTAAATTCTACGAGCTATTTAGAAAATAATGAAAAATGTTTTAAACAATCAGGTTTGTTGGTTTTAAACAACAAGAAAAACATGGTCTTGTGTTAAATCACCATCAACTTAAAAAAGCTTATATCAATACTTTACACTCTTCCTTGCTTGCAAGGTTAGAAATTTATAGAAAACTTAACAAGTAGTAACCAATGTTAATATATTTTTCTAAAGGATATTAAACTTTTCATTAAGGAAATGAAAAGAGACTAATGCTCCAAAATACTAAGTAAATAGAGTCGCTAAAAATTCAAAAGATAGAGATCAACTAAGAAAAAAACATAAAATTCTTTCAGTTCCTATTCAAATCTTGGATGGAATAATCCTTGAAACTTTTAGATAATGAACACCATGAAGAAGACTTCAAGTGGGCTAAATCAAAGCACTCCAAACATGAACTTGATGAATTTTGAAATATACGTAGATTTCTCAACATGTAGTAATCAATGTTAGTTGAAAAGGAAATTATATTGAAGAAAAGTTCAAACATGTCGAACTTCTTACTCTAATACGATGTTAAATCACTACTAAATAAAAAATATACCTTATTTCAAACCATCTCTAAAATAATACTCTTTTTACTCTTGAACATCTTCACAGGTACTGTTTATTCACAAATACAGCAGTAAAATGGTATTGGAGACAGCAATCAAAATCTCCCTCAGCTACTTCTTGTCCACAGTAATCATGATATACACTCAGCATCTTTCACAAGGGTTTTCAGAGCCACCCATTGATCTTAAAAACATTGGAATTGGTTTGTTTCTGATAGGCATTATTGGGAACTTTTACCATCATTATCTCTTGTCCAAAACCAGAAAACAGGGAGAAACAAGCTACAAAATTCCCAAAGGAGGCCTCTTCAGCCTTGTCATCTGCCCTCACTATCTGTTTGAAATAATTGAGTTCTTTGGATTTGCTTTAATCTCTCAGGAACTCTATCCTTTGTGCTTCAGCATTGGCACCAGTCTTTATTTGGCTGGGAGGAGCTATGCCACTAGGAAATGGTACATCTCCAAATTTGAAAACTTCCCCAACCATGTCAAAGCCCTTCTCCCTTTTGTCTTTTAG AATTATTTGAAAAAATATAGAAATTTTTTGCCTCATAAGAGAATTCGGTGGATGGAACTGTATTTTTCTATGCGATTTAGACGTAACGTGTGATAAACCAAACCACTGGCTCTCATATGGACCCAAAGTTTCAATTCACTCAAAAATCGCTAAATCGCAATGGCGTTCTATAAAACGAAACCTCACTCTTTTTGCCTCCAATGCCGTTTCAGATTTCTACACACTTCTTCTGGAGCTTTTTCCCCTCTGAGTCTCGGCGGCGATGGACGTTTTATCGGCGTTTCTCTTCCCTCCGCCTCCTTCCACGTTCGTCAACGTCATGACAGTGGTGAGCTCGACCGCGATGGCTGTGGCTGGAATTTCCGAGATTAACGGTAAGCATTTGCAGTATTCCAAGTTCTGGAATGCGAATACTGTTCCGAAACCTTCATCTGAAGAAACTAAGCTTTCTTCCAAATACGGAATGCTCTTGGCTTATACTCCGGCGTTTCTCGCTGGTGCGGCGTCGTTTTGGCTCTTTCCGAGCGGCGAGGAAAGGATTCTTTTGCTTAAATCTGCTTTAACTCTCCATTTCTTCAAGAGGATCTTTGAGAATGCAGTTTCTTCTATGATGTTCTTGAATAGCATCCTCGTACTGTTTATTCACAAATACAGCAGTAAAATGGTATTGGAGACAGCAATCAAAATCTCCCTCAGCTACTTCTTGTCCACAGTAATCATGATATACACTCAGCATCTTTCACAAGGGTTTTCAGAGCCACCCATTGATCTTAAAAACATTGGAATTGGTTTGTTTCTGATAGGCATTATTGGGAACTTTTACCATCATTATCTCTTGTCCAAAACCAGAAAACAGGGAGAAACAAGCTACAAAATTCCCAAAGGAGGCCTCTTCAGCCTTGTCATCTGCCCTCACTATCTGTTTGAAATAATTGAGTTCTTTGGATTTGCTTTAATCTCTCAGGAACTCTATCCTTTGTGCTTCAGCATTGGCACCAGTCTTTATTTGGCTGGGAGGAGCTATGCCACTAGGAAATGGTACATCTCCAAATTTGAAAACTTCCCCAACCATGTCAAAGCCCTTCTCCCTTTTGTCTTTTAG ATGGACGTTTTATCGGCGTTTCTCTTCCCTCCGCCTCCTTCCACGTTCGTCAACGTCATGACAGTGGTGAGCTCGACCGCGATGGCTGTGGCTGGAATTTCCGAGATTAACGGTAAGCATTTGCAGTATTCCAAGTTCTGGAATGCGAATACTGTTCCGAAACCTTCATCTGAAGAAACTAAGCTTTCTTCCAAATACGGAATGCTCTTGGCTTATACTCCGGCGTTTCTCGCTGGTGCGGCGTCGTTTTGGCTCTTTCCGAGCGGCGAGGAAAGGATTCTTTTGCTTAAATCTGCTTTAACTCTCCATTTCTTCAAGAGGATCTTTGAGAATGCAGTTTCTTCTATGATGTTCTTGAATAGCATCCTCGTACTGTTTATTCACAAATACAGCAGTAAAATGGTATTGGAGACAGCAATCAAAATCTCCCTCAGCTACTTCTTGTCCACAGTAATCATGATATACACTCAGCATCTTTCACAAGGGTTTTCAGAGCCACCCATTGATCTTAAAAACATTGGAATTGGTTTGTTTCTGATAGGCATTATTGGGAACTTTTACCATCATTATCTCTTGTCCAAAACCAGAAAACAGGGAGAAACAAGCTACAAAATTCCCAAAGGAGGCCTCTTCAGCCTTGTCATCTGCCCTCACTATCTGTTTGAAATAATTGAGTTCTTTGGATTTGCTTTAATCTCTCAGGAACTCTATCCTTTGTGCTTCAGCATTGGCACCAGTCTTTATTTGGCTGGGAGGAGCTATGCCACTAGGAAATGGTACATCTCCAAATTTGAAAACTTCCCCAACCATGTCAAAGCCCTTCTCCCTTTTGTCTTTTAG MDVLSAFLFPPPPSTFVNVMTVVSSTAMAVAGISEINGKHLQYSKFWNANTVPKPSSEETKLSSKYGMLLAYTPAFLAGAASFWLFPSGEERILLLKSALTLHFFKRIFENAVSSMMFLNSILVLFIHKYSSKMVLETAIKISLSYFLSTVIMIYTQHLSQGFSEPPIDLKNIGIGLFLIGIIGNFYHHYLLSKTRKQGETSYKIPKGGLFSLVICPHYLFEIIEFFGFALISQELYPLCFSIGTSLYLAGRSYATRKWYISKFENFPNHVKALLPFVF Homology
BLAST of Lsi04G001750 vs. ExPASy Swiss-Prot
Match: Q28891 (3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Macaca fascicularis OX=9541 GN=SRD5A1 PE=1 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 3.5e-19 Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 0
BLAST of Lsi04G001750 vs. ExPASy Swiss-Prot
Match: P18405 (3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Homo sapiens OX=9606 GN=SRD5A1 PE=1 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.0e-18 Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 0
BLAST of Lsi04G001750 vs. ExPASy Swiss-Prot
Match: Q28892 (3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Macaca fascicularis OX=9541 GN=SRD5A2 PE=1 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 1.1e-17 Identity = 49/134 (36.57%), Postives = 82/134 (61.19%), Query Frame = 0
BLAST of Lsi04G001750 vs. ExPASy Swiss-Prot
Match: Q68FF9 (3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Mus musculus OX=10090 GN=Srd5a1 PE=2 SV=2) HSP 1 Score: 90.5 bits (223), Expect = 3.2e-17 Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 0
BLAST of Lsi04G001750 vs. ExPASy Swiss-Prot
Match: P24008 (3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Rattus norvegicus OX=10116 GN=Srd5a1 PE=1 SV=2) HSP 1 Score: 90.5 bits (223), Expect = 3.2e-17 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 0
BLAST of Lsi04G001750 vs. ExPASy TrEMBL
Match: A0A6J1J6R3 (3-oxo-5-alpha-steroid 4-dehydrogenase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111483043 PE=3 SV=1) HSP 1 Score: 466.8 bits (1200), Expect = 6.1e-128 Identity = 236/279 (84.59%), Postives = 247/279 (88.53%), Query Frame = 0
BLAST of Lsi04G001750 vs. ExPASy TrEMBL
Match: A0A6J1GZA3 (3-oxo-5-alpha-steroid 4-dehydrogenase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111458588 PE=3 SV=1) HSP 1 Score: 466.8 bits (1200), Expect = 6.1e-128 Identity = 236/279 (84.59%), Postives = 247/279 (88.53%), Query Frame = 0
BLAST of Lsi04G001750 vs. ExPASy TrEMBL
Match: A0A1S3BFS0 (3-oxo-5-alpha-steroid 4-dehydrogenase 2-like OS=Cucumis melo OX=3656 GN=LOC103489360 PE=3 SV=1) HSP 1 Score: 464.2 bits (1193), Expect = 4.0e-127 Identity = 232/279 (83.15%), Postives = 250/279 (89.61%), Query Frame = 0
BLAST of Lsi04G001750 vs. ExPASy TrEMBL
Match: A0A6J1DAI6 (very-long-chain enoyl-CoA reductase-like OS=Momordica charantia OX=3673 GN=LOC111018692 PE=3 SV=1) HSP 1 Score: 441.8 bits (1135), Expect = 2.1e-120 Identity = 220/279 (78.85%), Postives = 241/279 (86.38%), Query Frame = 0
BLAST of Lsi04G001750 vs. ExPASy TrEMBL
Match: A0A0A0KTC7 (S5A_REDUCTASE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G612880 PE=3 SV=1) HSP 1 Score: 428.3 bits (1100), Expect = 2.4e-116 Identity = 216/279 (77.42%), Postives = 236/279 (84.59%), Query Frame = 0
BLAST of Lsi04G001750 vs. NCBI nr
Match: XP_038891781.1 (3-oxo-5-alpha-steroid 4-dehydrogenase 2-like [Benincasa hispida]) HSP 1 Score: 479.9 bits (1234), Expect = 1.4e-131 Identity = 244/279 (87.46%), Postives = 254/279 (91.04%), Query Frame = 0
BLAST of Lsi04G001750 vs. NCBI nr
Match: XP_022984951.1 (3-oxo-5-alpha-steroid 4-dehydrogenase 1-like [Cucurbita maxima]) HSP 1 Score: 466.8 bits (1200), Expect = 1.3e-127 Identity = 236/279 (84.59%), Postives = 247/279 (88.53%), Query Frame = 0
BLAST of Lsi04G001750 vs. NCBI nr
Match: XP_022957108.1 (3-oxo-5-alpha-steroid 4-dehydrogenase 1-like [Cucurbita moschata]) HSP 1 Score: 466.8 bits (1200), Expect = 1.3e-127 Identity = 236/279 (84.59%), Postives = 247/279 (88.53%), Query Frame = 0
BLAST of Lsi04G001750 vs. NCBI nr
Match: KAG7032032.1 (3-oxo-5-alpha-steroid 4-dehydrogenase 1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 466.1 bits (1198), Expect = 2.2e-127 Identity = 236/279 (84.59%), Postives = 247/279 (88.53%), Query Frame = 0
BLAST of Lsi04G001750 vs. NCBI nr
Match: XP_004135052.2 (3-oxo-5-alpha-steroid 4-dehydrogenase 2 [Cucumis sativus] >KAE8648808.1 hypothetical protein Csa_008329 [Cucumis sativus]) HSP 1 Score: 465.3 bits (1196), Expect = 3.7e-127 Identity = 232/279 (83.15%), Postives = 253/279 (90.68%), Query Frame = 0
BLAST of Lsi04G001750 vs. TAIR 10
Match: AT5G16010.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein ) HSP 1 Score: 312.0 bits (798), Expect = 4.9e-85 Identity = 155/281 (55.16%), Postives = 208/281 (74.02%), Query Frame = 0
BLAST of Lsi04G001750 vs. TAIR 10
Match: AT2G38050.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein ) HSP 1 Score: 77.0 bits (188), Expect = 2.6e-14 Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 0
BLAST of Lsi04G001750 vs. TAIR 10
Match: AT1G72590.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein ) HSP 1 Score: 59.3 bits (142), Expect = 5.7e-09 Identity = 40/115 (34.78%), Postives = 57/115 (49.57%), Query Frame = 0
BLAST of Lsi04G001750 vs. TAIR 10
Match: AT3G55360.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein ) HSP 1 Score: 58.5 bits (140), Expect = 9.7e-09 Identity = 48/165 (29.09%), Postives = 73/165 (44.24%), Query Frame = 0
BLAST of Lsi04G001750 vs. TAIR 10
Match: AT2G16530.1 (3-oxo-5-alpha-steroid 4-dehydrogenase family protein ) HSP 1 Score: 56.6 bits (135), Expect = 3.7e-08 Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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