Lsi04G001540 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G001540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	glycine-rich RNA-binding protein GRP1A-like
Location	chr04: 1739039 .. 1741334 (+)
RNA-Seq Expression	Lsi04G001540
Synteny	Lsi04G001540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATTTCATCTGCTGCTCTCCAACAACAAATCTTCCCAACAGGTCAGTATCCTTTCGAATCTCGTAGGAAATTCAATTCACCCAGTTTTCATCTCTATGGTTTTATCACAAATCTTCTCTGTATGTTCATTTTCTTGGGCCACACAATTTCGAAATTGAATCAAAGACTGAACAACATGACATCATTTCTTGGTATCTTCTAAATGAAAGTTCAGTCTCCACTTACGAAAAAAATAATAACTTCTCAAAGGAAATTTATTCGGTGTTTGCCTCATAATAATCTAACCTCACCTAACCTAATAGTTAGAGGTGAATTCAATAATTTGCATCTTCTCTATATCCAATAGTAAAAGAAGGTCAACACAGCGCACCGAACAATTTTTCCTTCAAAAGCTCAAAAGATCATCATTATGTCACTGGGTGTTTTTGTTAGTGCTTAATCTTGTGGGTTTACTACAAAAATTTAATCATACTAATACTCAAATTCTGCGCGACTCTCTTTTGATATTATGTTAAAAGACTCGTTAGGTCAGAAGTTTAGGTTAGGATAACTTTAATTATAACAATGCTTTGATCATAATCAAGCACATAATAAAGTATGTACGACAAAGTTGAAAAATGAGACAGACAAGGAACAGAAATAAAGTGTGCATTCCAGATAACATGTGTGGGTGTGTATAAACGACAAATTTGCAAGATTGAAGATCTGACCTAACGAGTGCAGGTTAATGTCTTTTACAATGTCGAATGAAAATAAATATACAAATAAAATAAAGTTTAATATCCTGTGAAAGGAGGGCCATAACAATTTATGGCTTTTCCACTAACTTTAGCTTTTGGGAGATAATATTTTCAATCAAATCAGAGTCTAGATGCTGCTACTCAGTACTGACAGAAGTGATCAAATAATCAACTATTCTAATTAGTCAAGATATTCATGATCTCCAATTGAGTTTTGTTTATTTGAATGGTACTACTTAGTAAAAACAAAGTTATCAAATGATTTAATTTTTCATTTATTTTATGATACATGATGCTTACAAGTTACATATATGTTTGGTTGCAAATATTTTGTGTTTTTTTAGAAGTGCTTTCTATTATTATAGTTCAAAAACTTGTTCAATAAGCTCTTCCTATATATTAGAGAAATTTTCACAAATAGAAAAATATCAAACTATTTACAGAAAATAGCAAAAAAAAATAATGATAGACATTGATAGACTTCTATCAGCATCATCAGTGATAAATTTCTATCATTTCTATCACTGATAGACCCTGATAGACTTCTATCAGTGTCTATCACAACTATCTAAAATTTTTGCTATTTTATGTAAATAGTTTCCCTTATTTTTCTATTTTAATTTTTTTTATATATTAATATTAAAAATGTAATTTTAAACTACTTGGGTAAGGAAGGATAAAAAGGAGTTTCGAAAACAGAAAAAATATAATTGAACAAAAATTATTAAGATTAATTATTAAAATGACTACCTTAGTTATTGAACTTTAAAAAATAGCTATTTTGGTCCATACTTTTATTTAAATTTAACAAATGAACAACATAACTTTAAATATGTATACTAATCAAGACGAACTTTAGACGAGCAAAGCCGTATAAGTAGAAAGTAGAATAGTAAAGACAATCAAATTATTGTTTTTTTTCTAAAATTTAATGACTAAAATAGATATTTTGAAAGTTCAAGGACTAAAATAGAACAAATTTAAAAGTTTATGGGTCATTATAAAGGTTTGCAAATTCAAAACTTCAAAGAGTAAAATGAGACTTAAAAGTTTTTGGTGCCTCACAAGTGCGTGCCATGAATGGTATGTACCTACACATTTCCCAAAAAAAACAAAAGGTCAACAAAAGAAAATTTACCACTTAATTCATACCGGCCGTGTGTATTTGTAGTGTGTTTTTCTGATATGTTCTATATGTATGCAGAGTCTAATTACCAACAGAGAACTTACACAGAAAAACATGGCAAAGATGGGGTTACTAACCAGATTGACAGAAGATACAGTGCAAGTGCAATCACCGTTTCTAGTGGGATTCGTCGTGGAAGTGCAGGTCATGGAGGTGCAGCCTCCGGCGGTGGAGAAAATGGTGGTGGCAATAGACCTCATACAGGAGGAGGTACAGCCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACATCACCGCCAAGGTCGACCGCACAATGCAGGAAATCGCTATGAGAACAACATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCTCATCTCTATAGAGTTTTCTGA

mRNA sequence

ATGGCCATTTCATCTGCTGCTCTCCAACAACAAATCTTCCCAACAGAGTCTAATTACCAACAGAGAACTTACACAGAAAAACATGGCAAAGATGGGGTTACTAACCAGATTGACAGAAGATACAGTGCAAGTGCAATCACCGTTTCTAGTGGGATTCGTCGTGGAAGTGCAGGTCATGGAGGTGCAGCCTCCGGCGGTGGAGAAAATGGTGGTGGCAATAGACCTCATACAGGAGGAGGTACAGCCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACATCACCGCCAAGGTCGACCGCACAATGCAGGAAATCGCTATGAGAACAACATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCTCATCTCTATAGAGTTTTCTGA

Coding sequence (CDS)

ATGGCCATTTCATCTGCTGCTCTCCAACAACAAATCTTCCCAACAGAGTCTAATTACCAACAGAGAACTTACACAGAAAAACATGGCAAAGATGGGGTTACTAACCAGATTGACAGAAGATACAGTGCAAGTGCAATCACCGTTTCTAGTGGGATTCGTCGTGGAAGTGCAGGTCATGGAGGTGCAGCCTCCGGCGGTGGAGAAAATGGTGGTGGCAATAGACCTCATACAGGAGGAGGTACAGCCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACATCACCGCCAAGGTCGACCGCACAATGCAGGAAATCGCTATGAGAACAACATGGGGCTTCTGGTAGCTGCAGTTTTGGCCGCCATTGCTCATCTCTATAGAGTTTTCTGA

Protein sequence

MAISSAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQGRPHNAGNRYENNMGLLVAAVLAAIAHLYRVF

Homology

[Close]

BLAST of Lsi04G001540 vs. ExPASy TrEMBL
Match: A0A5A7SUI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001940 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.8e-45
Identity = 110/132 (83.33%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 1   MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAG 60
           +AISSAALQQQIFP  TESNYQQ+TYT K GK GVTNQI RRYSASAITVS+ IRR  A 
Sbjct: 17  LAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRR--AN 76

Query: 61  HGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQGRPHNAGNRYENNMGLLVAA 120
            G AA+GGGENGGG+RPHTGGGTAVIPVYAAGSAQA HRQGRPHNAGN YENN GLLVAA
Sbjct: 77  GGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAA 136

Query: 121 VLAAIAHLYRVF 131
           VLAAIAHL RV+
Sbjct: 137 VLAAIAHLCRVY 146

[Close]

BLAST of Lsi04G001540 vs. ExPASy TrEMBL
Match: A0A1S3BFU8 (uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.8e-45
Identity = 110/132 (83.33%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 1   MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAG 60
           +AISSAALQQQIFP  TESNYQQ+TYT K GK GVTNQI RRYSASAITVS+ IRR  A 
Sbjct: 17  LAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRR--AN 76

Query: 61  HGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQGRPHNAGNRYENNMGLLVAA 120
            G AA+GGGENGGG+RPHTGGGTAVIPVYAAGSAQA HRQGRPHNAGN YENN GLLVAA
Sbjct: 77  GGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAA 136

Query: 121 VLAAIAHLYRVF 131
           VLAAIAHL RV+
Sbjct: 137 VLAAIAHLCRVY 146

[Close]

BLAST of Lsi04G001540 vs. ExPASy TrEMBL
Match: A0A0A0KUR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.3e-45
Identity = 112/138 (81.16%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 1   MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAG 60
           +AISSAALQQQIFP  TESNYQQ+TYT+KHGK GVTNQI+RRYS+SAITVS+ IRRGS  
Sbjct: 18  LAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGS 77

Query: 61  HGG------AASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQGRPHNAGNRYENNM 120
            GG      AA+GGGEN GG+RP TGGGTAVIPVYAAGSAQAHHRQGR HNAGN YENNM
Sbjct: 78  GGGGGSGSAAAAGGGEN-GGSRPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNM 137

Query: 121 GLLVAAVLAAIAHLYRVF 131
           GLLVAAVLAAIAHL RVF
Sbjct: 138 GLLVAAVLAAIAHLCRVF 154

[Close]

BLAST of Lsi04G001540 vs. ExPASy TrEMBL
Match: A0A6J1GZ71 (glycine-rich RNA-binding protein GRP1A-like OS=Cucurbita moschata OX=3662 GN=LOC111458855 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.2e-37
Identity = 96/127 (75.59%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 5   SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAAS 64
           S+ALQQQI PTESNY Q+T  EKHGKDGVTN+I   YSA AITVS GI     GHG AA 
Sbjct: 22  SSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGI-----GHGSAA- 81

Query: 65  GGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHNAGNRYENNMGLLVAAVLAAI 124
           GGGENGGG RP   GGG AVIPVYAAGSAQAHHRQGR  NAGN YENNMGLLVA+VLAAI
Sbjct: 82  GGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAI 141

Query: 125 AHLYRVF 131
            HL+ VF
Sbjct: 142 VHLHLVF 142

[Close]

BLAST of Lsi04G001540 vs. ExPASy TrEMBL
Match: A0A6J1JB47 (uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 95/127 (74.80%), Postives = 101/127 (79.53%), Query Frame = 0


Query: 5   SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAAS 64
           S+A QQQI PTE NY Q+T  EKHG+DGVTN+I   YSA AITVS GI     GHG AA 
Sbjct: 22  SSARQQQILPTEPNYHQKTNAEKHGQDGVTNRISSIYSARAITVSQGI-----GHGSAA- 81

Query: 65  GGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHNAGNRYENNMGLLVAAVLAAI 124
           GGGENGGG RP   GGG AVIPVYAAGSAQAHHRQGRP NAGN YENNMGLLVA+VLAAI
Sbjct: 82  GGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRPRNAGNHYENNMGLLVASVLAAI 141

Query: 125 AHLYRVF 131
           AHL+ VF
Sbjct: 142 AHLHLVF 142

[Close]

BLAST of Lsi04G001540 vs. NCBI nr
Match: XP_038892711.1 (uncharacterized protein LOC120081693 [Benincasa hispida])

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-47
Identity = 108/130 (83.08%), Postives = 115/130 (88.46%), Query Frame = 0


Query: 1   MAISSAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHG 60
           MAISSAALQQQIFPTESNYQQ+TYTEK  KDG+TNQI RRYSA+ ITVS+GI     G G
Sbjct: 18  MAISSAALQQQIFPTESNYQQKTYTEKRSKDGITNQIARRYSATEITVSNGI-----GQG 77

Query: 61  GAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQGRPHNAGNRYENNMGLLVAAVL 120
            A +GGGENGGG+RPH GGGTAVIPVYAAGSAQAHHRQGRPHNAGNR+ENN GLLVAAVL
Sbjct: 78  SAVAGGGENGGGSRPHNGGGTAVIPVYAAGSAQAHHRQGRPHNAGNRHENNRGLLVAAVL 137

Query: 121 AAIAHLYRVF 131
           AAIAHLY VF
Sbjct: 138 AAIAHLYGVF 142

[Close]

BLAST of Lsi04G001540 vs. NCBI nr
Match: XP_008446752.1 (PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo] >KAA0034650.1 uncharacterized protein E6C27_scaffold65G006690 [Cucumis melo var. makuwa] >TYK09201.1 uncharacterized protein E5676_scaffold475G001940 [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 3.7e-45
Identity = 110/132 (83.33%), Postives = 116/132 (87.88%), Query Frame = 0


Query: 1   MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAG 60
           +AISSAALQQQIFP  TESNYQQ+TYT K GK GVTNQI RRYSASAITVS+ IRR  A 
Sbjct: 17  LAISSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRR--AN 76

Query: 61  HGGAASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQGRPHNAGNRYENNMGLLVAA 120
            G AA+GGGENGGG+RPHTGGGTAVIPVYAAGSAQA HRQGRPHNAGN YENN GLLVAA
Sbjct: 77  GGAAAAGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAA 136

Query: 121 VLAAIAHLYRVF 131
           VLAAIAHL RV+
Sbjct: 137 VLAAIAHLCRVY 146

[Close]

BLAST of Lsi04G001540 vs. NCBI nr
Match: XP_011655831.2 (glycine-rich protein DOT1 [Cucumis sativus] >KAE8648819.1 hypothetical protein Csa_009069 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 3.1e-44
Identity = 113/142 (79.58%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 1   MAISSAALQQQIFP--TESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGS-- 60
           +AISSAALQQQIFP  TESNYQQ+TYT+KHGK GVTNQI+RRYS+SAITVS+ IRRGS  
Sbjct: 18  LAISSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGS 77

Query: 61  -AGHGG-------AASGGGENGGGNRPHTGGGTAVIPVYAAGSAQAHHRQGRPHNAGNRY 120
            +G GG       AA+GGGEN GG+RP TGGGTAVIPVYAAGSAQAHHRQGR HNAGN Y
Sbjct: 78  GSGSGGGGGSGSAAAAGGGEN-GGSRPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSY 137

Query: 121 ENNMGLLVAAVLAAIAHLYRVF 131
           ENNMGLLVAAVLAAIAHL RVF
Sbjct: 138 ENNMGLLVAAVLAAIAHLCRVF 158

[Close]

BLAST of Lsi04G001540 vs. NCBI nr
Match: XP_023517064.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] >KAG7032020.1 hypothetical protein SDJN02_06062 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.2 bits (417), Expect = 3.7e-37
Identity = 97/127 (76.38%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 5   SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAAS 64
           S+ALQQQI PTESNY Q+T  EKHGKDGVTN+I   YSA AITVS GI     GHG AA 
Sbjct: 22  SSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGI-----GHGSAA- 81

Query: 65  GGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHNAGNRYENNMGLLVAAVLAAI 124
           GGGENGGG RP   GGG AVIPVYAAGSAQAHHRQGR  NAGN YENNMGLLVA+VLAAI
Sbjct: 82  GGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAI 141

Query: 125 AHLYRVF 131
           AHL+ VF
Sbjct: 142 AHLHLVF 142

[Close]

BLAST of Lsi04G001540 vs. NCBI nr
Match: KAG6601227.1 (hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.2 bits (417), Expect = 3.7e-37
Identity = 97/127 (76.38%), Postives = 102/127 (80.31%), Query Frame = 0


Query: 5   SAALQQQIFPTESNYQQRTYTEKHGKDGVTNQIDRRYSASAITVSSGIRRGSAGHGGAAS 64
           S+ALQQQI PTESNY Q+T  EKHGKDGVTN+I   YSA AITVS GI     GHG AA 
Sbjct: 13  SSALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGI-----GHGSAA- 72

Query: 65  GGGENGGGNRPHT-GGGTAVIPVYAAGSAQAHHRQGRPHNAGNRYENNMGLLVAAVLAAI 124
           GGGENGGG RP   GGG AVIPVYAAGSAQAHHRQGR  NAGN YENNMGLLVA+VLAAI
Sbjct: 73  GGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVLAAI 132

Query: 125 AHLYRVF 131
           AHL+ VF
Sbjct: 133 AHLHLVF 133

The following BLAST results are available for this feature:

BLAST of Lsi04G001540 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G001540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUI0	1.8e-45	83.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFU8	1.8e-45	83.33	uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=...	[more]
A0A0A0KUR6	2.3e-45	81.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1	[more]
A0A6J1GZ71	5.2e-37	75.59	glycine-rich RNA-binding protein GRP1A-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JB47	1.2e-36	74.80	uncharacterized protein LOC111485159 OS=Cucurbita maxima OX=3661 GN=LOC111485159...	[more]

BLAST of Lsi04G001540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892711.1	1.8e-47	83.08	uncharacterized protein LOC120081693 [Benincasa hispida]	[more]
XP_008446752.1	3.7e-45	83.33	PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo] >KAA0034650.1 unc...	[more]
XP_011655831.2	3.1e-44	79.58	glycine-rich protein DOT1 [Cucumis sativus] >KAE8648819.1 hypothetical protein C...	[more]
XP_023517064.1	3.7e-37	76.38	glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo] >KAG703...	[more]
KAG6601227.1	3.7e-37	76.38	hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi04G001540 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..82
None	No IPR available	PANTHER	PTHR36245:SF2	PROTEIN, PUTATIVE-RELATED	coord: 4..127
None	No IPR available	PANTHER	PTHR36245	GLYCINE-RICH PROTEIN DOT1-LIKE	coord: 4..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G001540.1	Lsi04G001540.1	mRNA