Lsi04G001530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G001530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	DUF2996 family protein
Location	chr04: 1726405 .. 1729039 (-)
RNA-Seq Expression	Lsi04G001530
Synteny	Lsi04G001530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGATTCTCAAAGGAGGACGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCACAATTCTAAACCATCCCCAGTTTTCTCCGTTCACACGGTACGTTTCCTCCTTTTGTTCTCATTTCGATTTCGATTCCAATTCCGATTCCGTGTCGTTCTTGTCAATTTATTCTTGTTTTGGTTCTCTTGTGAATAGACTTACAGTTCTAGTTATACCTTTTTCGAGTTTCGTATTCTCTTTTGTAGCACAGTACTTAAGGAACTCATGGTTGATTTTACTTGGTTTTGTTCTTCCCACTGTTGACTAGCTGTGAGATGTTTGAGTGATTGGAGAAGAAAAGAGGAAAATGAAGCTTAAAAATTCTCCCTAGAATCGTGTCATGTTAGGTAGTTTTGGTTTGCAAAACTGTAATATTAAGTGATTCGGAATTGTAATGCCAAAATAAAGCAGTTAGCAGAAGAGAAAAATGCTATTAAGACTTTGAAATAAATTTAATTCATATTCATATTCTTAATATTTCCTCTCGCTTGTTAGCTTGAAAATTAGCACAATAAGTAACAAATAGTTATCAATATTAGCGGTAGAGGAAACGACTTGGTAAGGGTTTGAACTTAGGATATATTGGTAACCCAAAAATTAAAGTTGAGGGATTGTGGTAAATAAATTTAGTTATCAATTGTTCTTGACAGTTGTTCAGTTATTTCTATTATATTCTCTCCTGTTTCAATTGGGGGCAGAGTCATGGTTTATACTTTATATGTATATAGATTATGAATATTACATTATAAATATAGAAAAGAGGATTCAAACCTAAAATATTAGGCACTTATAAGTTCCCACTTTGCTCAAGTCGGTGATATGATAGGTAGTTGTGACAAAGGACATCAGAATGGTTGAGCCATAATTTCTGCCTTAGGTATCTTTTTCTTTGAATTGTTTCTAGAAATATAAGTTTTTCTTCAATTCATGATCTTGTTGTATTCCTGCCATACCAGAAAGAACGCATGAGTTCAATCACTTAAAGAAAACGAAAAGGTGCAGGTGTAGCCAGTATTTGTTAGTATACCAAAATCTTCTAAAACAGTGGAGTGATAGTATAACCTAGCTTTTATGATTCTAGTTGGAATCTGTCGTCTCTACTCGTCTTTACAGATATCATCCTGCTCTTCATTTTATAATTTTAGTTAACAAAAAGAGTAGATATAACTTAAGTTGACTTATGCAGGTGGTACATAAGCTTGCAGCTGAACGCAGAGTCATATGCTGCTCTACCTTGCAGGAATCATCTACTCCAACAGGTTAGTTGCTGGCAAGTTTTTTAACGTACCACTGAAAGATTGACGGAAGGAAATTCAACGTCAATAACTTTATACATTTTTATGCTAGAAAAATGAGTTTGATGTATTTCTCAATTTTTTTGTCCTATATCATTAGGTGTTTGTTTAGACTTAACGAGTGTTTAACATATTTAACAAATGTTGGACATGTATTTAATTTGTGTATTGTGCTAACAAGTGTCTAATACATATCCAACAAGTACCATGAGTGTCCAAGTATCTAACATGTGTCGGACAAGTACACACTAACCAAACTAAAGTGTCTTTGCTTCTTAAGTGACCCCTATAATTTTTGTTTATCTTTTTTCTCTTCCAAATGAAGAGGGTCAGGCTCTGGTTCATTTGTTTCTTTCTGCTGTGTTTATTAATACTCAATTTATGGCATCTGCTGAAATAGAAGTCTTTTCTATCAGTTGCTGCCGAGCCAAAGGAGATAAAGACAGTTCCGAAGGAAGCTCCAGCAAAGGCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTGAGTTGATGGAGGAAGATGTCATACCTTCGCTGAAAGCGATTCTTGAAGCACAAACCGATGTCTCCGATATTGAATTATCATTCCAAGATGATAGAGTTAGTTTCTAGTATCCTCATTTCTCGTTTACTAATCAACTCTTAGCTTGGGCTCATTGAATTTGGATTGACAATGGCAGTTGGATGGTTCATTCTTGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTACTTAAATTCTTAGATAATGTAAACCCTGAACTTTAAAGTATTCATATTCTTTTAAAAATTGCCATACATTCATTGACCTTTTATAAATATTTCAAAACTACTTTTGGAATAGAAATCCATTAGAACATTAGACGAAAATTGAGACCTGGAACACTGTAGCGATGAGACTATGACCTTGAATGGAAATTAGGATGAAATTAGGACTTAATCTATGTTCTGATTTCCATCTAAAATTCTAACCCATTTCTACTCTAAACGGTAGTTTTGCAACATTATGAAAAGTCAAGGCTAATATTGCAACTTTTAAAATAACGTGGGCATCCTTGAAAAACGGACAAAACATCTGAGCTCGATGTTTGACTCTTCAATGGTTGAATCACGAACAGGTCCAAAAGGGTTTTCACTATCTTCGTATGGCTATGGAGGAAGCTCAGTTGAACCCTTTCTGGTCGATGAGAAAAAAGTTACAGCAAAGCTTGTAGTTTTCTGGATTGAGAAGCGCTTGGCTGCACAAGGAATTATCCCAGTCTGGAAAGACTAA

mRNA sequence

ATGGCAATGATTCTCAAAGGAGGACGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCACAATTCTAAACCATCCCCAGTTTTCTCCGTTCACACGAAGTCTTTTCTATCAGTTGCTGCCGAGCCAAAGGAGATAAAGACAGTTCCGAAGGAAGCTCCAGCAAAGGCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTGAGTTGATGGAGGAAGATGTCATACCTTCGCTGAAAGCGATTCTTGAAGCACAAACCGATGTCTCCGATATTGAATTATCATTCCAAGATGATAGAGTTAGAAGCTCAGTTGAACCCTTTCTGGTCGATGAGAAAAAAGTTACAGCAAAGCTTGTAGTTTTCTGGATTGAGAAGCGCTTGGCTGCACAAGGAATTATCCCAGTCTGGAAAGACTAA

Coding sequence (CDS)

ATGGCAATGATTCTCAAAGGAGGACGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCACAATTCTAAACCATCCCCAGTTTTCTCCGTTCACACGAAGTCTTTTCTATCAGTTGCTGCCGAGCCAAAGGAGATAAAGACAGTTCCGAAGGAAGCTCCAGCAAAGGCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTGAGTTGATGGAGGAAGATGTCATACCTTCGCTGAAAGCGATTCTTGAAGCACAAACCGATGTCTCCGATATTGAATTATCATTCCAAGATGATAGAGTTAGAAGCTCAGTTGAACCCTTTCTGGTCGATGAGAAAAAAGTTACAGCAAAGCTTGTAGTTTTCTGGATTGAGAAGCGCTTGGCTGCACAAGGAATTATCCCAGTCTGGAAAGACTAA

Protein sequence

MAMILKGGRGIGVSTATYFPHNSKPSPVFSVHTKSFLSVAAEPKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDDRVRSSVEPFLVDEKKVTAKLVVFWIEKRLAAQGIIPVWKD

Homology

[Close]

BLAST of Lsi04G001530 vs. ExPASy TrEMBL
Match: A0A0A0KUS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614630 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.5e-50
Identity = 122/194 (62.89%), Postives = 131/194 (67.53%), Query Frame = 0


Query: 1   MAMILKGGRGIGVSTATYFPHNSKPSPVFSVH-------------------TKSFLSVAA 60
           MAMILKGGRGIGVSTATYFPHN KPSP+FS+H                     S  +VAA
Sbjct: 1   MAMILKGGRGIGVSTATYFPHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVAA 60

Query: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDDR 120
           EPKEIKTVPKEAPAKAKPPAKAPVKPLPELM+E+VIPSLKAILEAQ DVSD+ LSFQDDR
Sbjct: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMDEEVIPSLKAILEAQADVSDVALSFQDDR 120

Query: 121 V-----------------------------------RSSVEPFLVDEKKVTAKLVVFWIE 141
           +                                    SSVEPFLVDEKKV+ KL+VFWIE
Sbjct: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSGKLIVFWIE 180

[Close]

BLAST of Lsi04G001530 vs. ExPASy TrEMBL
Match: A0A6J1JE31 (uncharacterized protein LOC111484155 OS=Cucurbita maxima OX=3661 GN=LOC111484155 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.5e-50
Identity = 123/193 (63.73%), Postives = 130/193 (67.36%), Query Frame = 0


Query: 1   MAMILKGGRGIGVSTATYFPHNSKPSPVFSVHT------------------KSFLSVAAE 60
           MAMILKGG GIGVSTATYFP NSKPSPVFSVHT                   S  +V+AE
Sbjct: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLLAERRVICCSTLQESSTPTVSAE 60

Query: 61  PKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDDRV 120
           PKEIK V KEAPAK KPPAKAPVKPLP++MEEDVIPSLKAILEAQ DV+DIELSFQDDR+
Sbjct: 61  PKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRL 120

Query: 121 -----------------------------------RSSVEPFLVDEKKVTAKLVVFWIEK 141
                                               SSVEPFLVDEKKVTAKL+VFWIEK
Sbjct: 121 DGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEK 180

[Close]

BLAST of Lsi04G001530 vs. ExPASy TrEMBL
Match: A0A6J1GX25 (uncharacterized protein LOC111458230 OS=Cucurbita moschata OX=3662 GN=LOC111458230 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.5e-50
Identity = 123/193 (63.73%), Postives = 130/193 (67.36%), Query Frame = 0


Query: 1   MAMILKGGRGIGVSTATYFPHNSKPSPVFSVHT------------------KSFLSVAAE 60
           MAMILKGG GIGVSTATYFP NSKPSPVFSVHT                   S  +V+AE
Sbjct: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLPAERRVICCSTLQESSTPTVSAE 60

Query: 61  PKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDDRV 120
           PKEIK V KEAPAK KPPAKAPVKPLP++MEEDVIPSLKAILEAQ DV+DIELSFQDDR+
Sbjct: 61  PKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRL 120

Query: 121 -----------------------------------RSSVEPFLVDEKKVTAKLVVFWIEK 141
                                               SSVEPFLVDEKKVTAKL+VFWIEK
Sbjct: 121 DGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEK 180

[Close]

BLAST of Lsi04G001530 vs. ExPASy TrEMBL
Match: A0A5A7SZ21 (DUF2996 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001950 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.3e-49
Identity = 123/195 (63.08%), Postives = 131/195 (67.18%), Query Frame = 0


Query: 1   MAMILKGGRGIGVSTATYFP-HNSKPSPVFSVH-------------------TKSFLSVA 60
           MAMILKGGRG+GVSTATYFP HN KPSP+FS+H                     S  +VA
Sbjct: 1   MAMILKGGRGLGVSTATYFPAHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVA 60

Query: 61  AEPKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDD 120
           AEPKEIKTVPKEAPAKAKPPAKA VKPLPELMEE+VIPSLKAILEAQ DV DIELSFQDD
Sbjct: 61  AEPKEIKTVPKEAPAKAKPPAKAAVKPLPELMEEEVIPSLKAILEAQADVYDIELSFQDD 120

Query: 121 RV-----------------------------------RSSVEPFLVDEKKVTAKLVVFWI 141
           R+                                    SSVEPFLVDEKKV+AKL+VFWI
Sbjct: 121 RLDGSFLKDGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSAKLIVFWI 180

[Close]

BLAST of Lsi04G001530 vs. ExPASy TrEMBL
Match: A0A1S3BGH0 (uncharacterized protein LOC103489386 OS=Cucumis melo OX=3656 GN=LOC103489386 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 6.3e-49
Identity = 123/195 (63.08%), Postives = 131/195 (67.18%), Query Frame = 0


Query: 1   MAMILKGGRGIGVSTATYFP-HNSKPSPVFSVH-------------------TKSFLSVA 60
           MAMILKGGRG+GVSTATYFP HN KPSP+FS+H                     S  +VA
Sbjct: 1   MAMILKGGRGLGVSTATYFPAHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVA 60

Query: 61  AEPKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDD 120
           AEPKEIKTVPKEAPAKAKPPAKA VKPLPELMEE+VIPSLKAILEAQ DV DIELSFQDD
Sbjct: 61  AEPKEIKTVPKEAPAKAKPPAKAAVKPLPELMEEEVIPSLKAILEAQADVYDIELSFQDD 120

Query: 121 RV-----------------------------------RSSVEPFLVDEKKVTAKLVVFWI 141
           R+                                    SSVEPFLVDEKKV+AKL+VFWI
Sbjct: 121 RLDGSFLKDGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSAKLIVFWI 180

[Close]

BLAST of Lsi04G001530 vs. NCBI nr
Match: XP_038891519.1 (uncharacterized protein LOC120080914 isoform X1 [Benincasa hispida])

HSP 1 Score: 216.1 bits (549), Expect = 2.0e-52
Identity = 128/194 (65.98%), Postives = 134/194 (69.07%), Query Frame = 0


Query: 1   MAMILKGGRGIGVSTATYFPHNSKPSPVFSVHT-------------------KSFLSVAA 60
           MAMILKGGRGIGVSTATYFPHNSKPSPVFS+HT                    S  +VAA
Sbjct: 1   MAMILKGGRGIGVSTATYFPHNSKPSPVFSLHTMVHKLAAERKVVCCSTLQESSTPTVAA 60

Query: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDDR 120
           EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQ DVSDI LSFQD+R
Sbjct: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQADVSDIGLSFQDNR 120

Query: 121 V-----------------------------------RSSVEPFLVDEKKVTAKLVVFWIE 141
           +                                    SSVEPFLVDEKKVTAKL+VFWIE
Sbjct: 121 LDGSFLKNGVPYTFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLIVFWIE 180

[Close]

BLAST of Lsi04G001530 vs. NCBI nr
Match: XP_004135038.1 (uncharacterized protein LOC101205552 [Cucumis sativus] >KGN52187.1 hypothetical protein Csa_009193 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 3.1e-50
Identity = 122/194 (62.89%), Postives = 131/194 (67.53%), Query Frame = 0


Query: 1   MAMILKGGRGIGVSTATYFPHNSKPSPVFSVH-------------------TKSFLSVAA 60
           MAMILKGGRGIGVSTATYFPHN KPSP+FS+H                     S  +VAA
Sbjct: 1   MAMILKGGRGIGVSTATYFPHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVAA 60

Query: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDDR 120
           EPKEIKTVPKEAPAKAKPPAKAPVKPLPELM+E+VIPSLKAILEAQ DVSD+ LSFQDDR
Sbjct: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMDEEVIPSLKAILEAQADVSDVALSFQDDR 120

Query: 121 V-----------------------------------RSSVEPFLVDEKKVTAKLVVFWIE 141
           +                                    SSVEPFLVDEKKV+ KL+VFWIE
Sbjct: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSGKLIVFWIE 180

[Close]

BLAST of Lsi04G001530 vs. NCBI nr
Match: XP_022986445.1 (uncharacterized protein LOC111484155 [Cucurbita maxima] >XP_022986526.1 uncharacterized protein LOC111484155 [Cucurbita maxima])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 123/193 (63.73%), Postives = 130/193 (67.36%), Query Frame = 0


Query: 1   MAMILKGGRGIGVSTATYFPHNSKPSPVFSVHT------------------KSFLSVAAE 60
           MAMILKGG GIGVSTATYFP NSKPSPVFSVHT                   S  +V+AE
Sbjct: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLLAERRVICCSTLQESSTPTVSAE 60

Query: 61  PKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDDRV 120
           PKEIK V KEAPAK KPPAKAPVKPLP++MEEDVIPSLKAILEAQ DV+DIELSFQDDR+
Sbjct: 61  PKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRL 120

Query: 121 -----------------------------------RSSVEPFLVDEKKVTAKLVVFWIEK 141
                                               SSVEPFLVDEKKVTAKL+VFWIEK
Sbjct: 121 DGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEK 180

[Close]

BLAST of Lsi04G001530 vs. NCBI nr
Match: XP_022956513.1 (uncharacterized protein LOC111458230 [Cucurbita moschata] >XP_023539763.1 uncharacterized protein LOC111800345 [Cucurbita pepo subsp. pepo] >KAG7032019.1 hypothetical protein SDJN02_06061 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 123/193 (63.73%), Postives = 130/193 (67.36%), Query Frame = 0


Query: 1   MAMILKGGRGIGVSTATYFPHNSKPSPVFSVHT------------------KSFLSVAAE 60
           MAMILKGG GIGVSTATYFP NSKPSPVFSVHT                   S  +V+AE
Sbjct: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLPAERRVICCSTLQESSTPTVSAE 60

Query: 61  PKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDDRV 120
           PKEIK V KEAPAK KPPAKAPVKPLP++MEEDVIPSLKAILEAQ DV+DIELSFQDDR+
Sbjct: 61  PKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRL 120

Query: 121 -----------------------------------RSSVEPFLVDEKKVTAKLVVFWIEK 141
                                               SSVEPFLVDEKKVTAKL+VFWIEK
Sbjct: 121 DGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEK 180

[Close]

BLAST of Lsi04G001530 vs. NCBI nr
Match: XP_008446754.1 (PREDICTED: uncharacterized protein LOC103489386 [Cucumis melo] >KAA0034651.1 DUF2996 family protein [Cucumis melo var. makuwa] >TYK09202.1 DUF2996 family protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.4 bits (516), Expect = 1.3e-48
Identity = 123/195 (63.08%), Postives = 131/195 (67.18%), Query Frame = 0


Query: 1   MAMILKGGRGIGVSTATYFP-HNSKPSPVFSVH-------------------TKSFLSVA 60
           MAMILKGGRG+GVSTATYFP HN KPSP+FS+H                     S  +VA
Sbjct: 1   MAMILKGGRGLGVSTATYFPAHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVA 60

Query: 61  AEPKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDD 120
           AEPKEIKTVPKEAPAKAKPPAKA VKPLPELMEE+VIPSLKAILEAQ DV DIELSFQDD
Sbjct: 61  AEPKEIKTVPKEAPAKAKPPAKAAVKPLPELMEEEVIPSLKAILEAQADVYDIELSFQDD 120

Query: 121 RV-----------------------------------RSSVEPFLVDEKKVTAKLVVFWI 141
           R+                                    SSVEPFLVDEKKV+AKL+VFWI
Sbjct: 121 RLDGSFLKDGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSAKLIVFWI 180

[Close]

BLAST of Lsi04G001530 vs. TAIR 10
Match: AT2G04039.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 157 Blast hits to 157 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 7.2e-21
Identity = 61/121 (50.41%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 56  KAKPPAKAP--VKPLPELMEEDVIPSLKAILEAQTDVSDIELSFQDDRVR---------- 115
           K KP AKA    KPL ++MEEDVIP L+AILE+Q D+SDI+LSFQDD++           
Sbjct: 43  KPKPAAKAAAVAKPLRQMMEEDVIPPLQAILESQDDISDIDLSFQDDKLEGFFLKKSIPY 102

Query: 116 --------------------------SSVEPFLVDEKKVTAKLVVFWIEKRLAAQGIIPV 139
                                     S+VEPFLVDE+K TA  VVFW+EKRLAAQGIIPV
Sbjct: 103 SFWAFFPTGNLTGAKGFSISSHGSGPSTVEPFLVDERKPTANHVVFWVEKRLAAQGIIPV 162

[Close]

BLAST of Lsi04G001530 vs. TAIR 10
Match: AT2G04039.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). )

HSP 1 Score: 95.9 bits (237), Expect = 2.7e-20
Identity = 69/148 (46.62%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 34  KSFLSVAAEPKEIKTVPKEA----PA-KAKPPAKAP--VKPLPELMEEDVIPSLKAILEA 93
           +S  S  A  K+ K   +E+    PA K KP AKA    KPL ++MEEDVIP L+AILE+
Sbjct: 50  ESSTSAVATEKKNKEEGEESTVAVPAKKPKPAAKAAAVAKPLRQMMEEDVIPPLQAILES 109

Query: 94  QTDVSDIELSFQDDRVR------------------------------------SSVEPFL 139
           Q D+SDI+LSFQDD++                                     S+VEPFL
Sbjct: 110 QDDISDIDLSFQDDKLEGFFLKKSIPYSFWAFFPTGNLTGAKGFSISSHGSGPSTVEPFL 169

[Close]

BLAST of Lsi04G001530 vs. TAIR 10
Match: AT2G04039.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-08
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 34  KSFLSVAAEPKEIKTVPKEA----PA-KAKPPAKAP--VKPLPELMEEDVIPSLKAILEA 93
           +S  S  A  K+ K   +E+    PA K KP AKA    KPL ++MEEDVIP L+AILE+
Sbjct: 50  ESSTSAVATEKKNKEEGEESTVAVPAKKPKPAAKAAAVAKPLRQMMEEDVIPPLQAILES 109

Query: 94  QTDVSDIELSFQDDRV 103
           Q D+SDI+LSFQDD++
Sbjct: 110 QDDISDIDLSFQDDKL 125

The following BLAST results are available for this feature:

BLAST of Lsi04G001530 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G001530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUS0	1.5e-50	62.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614630 PE=4 SV=1	[more]
A0A6J1JE31	7.5e-50	63.73	uncharacterized protein LOC111484155 OS=Cucurbita maxima OX=3661 GN=LOC111484155...	[more]
A0A6J1GX25	7.5e-50	63.73	uncharacterized protein LOC111458230 OS=Cucurbita moschata OX=3662 GN=LOC1114582...	[more]
A0A5A7SZ21	6.3e-49	63.08	DUF2996 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A1S3BGH0	6.3e-49	63.08	uncharacterized protein LOC103489386 OS=Cucumis melo OX=3656 GN=LOC103489386 PE=...	[more]

BLAST of Lsi04G001530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891519.1	2.0e-52	65.98	uncharacterized protein LOC120080914 isoform X1 [Benincasa hispida]	[more]
XP_004135038.1	3.1e-50	62.89	uncharacterized protein LOC101205552 [Cucumis sativus] >KGN52187.1 hypothetical ...	[more]
XP_022986445.1	1.5e-49	63.73	uncharacterized protein LOC111484155 [Cucurbita maxima] >XP_022986526.1 uncharac...	[more]
XP_022956513.1	1.5e-49	63.73	uncharacterized protein LOC111458230 [Cucurbita moschata] >XP_023539763.1 unchar...	[more]
XP_008446754.1	1.3e-48	63.08	PREDICTED: uncharacterized protein LOC103489386 [Cucumis melo] >KAA0034651.1 DUF...	[more]

BLAST of Lsi04G001530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04039.2	7.2e-21	50.41	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloropla...	[more]
AT2G04039.1	2.7e-20	46.62	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloropla...	[more]
AT2G04039.3	5.4e-08	52.63	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloropla...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021374	Protein of unknown function DUF2996	PFAM	PF11210	DUF2996	coord: 101..132 e-value: 1.8E-5 score: 25.2
IPR021374	Protein of unknown function DUF2996	PANTHER	PTHR36341	DUF2996 FAMILY PROTEIN	coord: 103..140 coord: 29..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G001530.1	Lsi04G001530.1	mRNA