Lsi04G001400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G001400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr04: 1602192 .. 1602641 (+)
RNA-Seq Expression	Lsi04G001400
Synteny	Lsi04G001400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAGTGTTTATAGGCTGAAACATATCACAGAATCAATAAAGAGCTGTTCATGATGTGAGATGTTTCAGCCTTTCAATTTTCGACAGAATTCTGCTTCCAGTTGTGAAGAGTGTGAAAATTTCGACTATTAAAATGCAATTCCAAGCAACACTTTCATAAAGACTTAGGAAGCTTACATCGTCTGATTCTTCCTTCTCTTCAACCTTCTCCTCTTTCTTCGTCTCAGCTGCAGCAGGGGCAGCGGCACCACCACCGCCACCACCTCCTGCAGCAGCAACTGCCACAGCAGCACCTCCACCAGAAGGAACAGATGCTAGCTTTTCTCTTCCGGATGCAATGAGCTCTGTAACGTCCTTACCCTTAACATTAGACAGCAGAAGCTCGATTCTGTCCTCATCAATTTCAGCTCCAACTGCAAAATGGTTCAGGAAAGAGAAACTATGA

mRNA sequence

ATGGAACTTACATCGTCTGATTCTTCCTTCTCTTCAACCTTCTCCTCTTTCTTCGTCTCAGCTGCAGCAGGGGCAGCGGCACCACCACCGCCACCACCTCCTGCAGCAGCAACTGCCACAGCAGCACCTCCACCAGAAGGAACAGATGCTAGCTTTTCTCTTCCGGATGCAATGAGCTCTGTAACGTCCTTACCCTTAACATTAGACAGCAGAAGCTCGATTCTGTCCTCATCAATTTCAGCTCCAACTGCAAAATGGTTCAGGAAAGAGAAACTATGA

Coding sequence (CDS)

ATGGAACTTACATCGTCTGATTCTTCCTTCTCTTCAACCTTCTCCTCTTTCTTCGTCTCAGCTGCAGCAGGGGCAGCGGCACCACCACCGCCACCACCTCCTGCAGCAGCAACTGCCACAGCAGCACCTCCACCAGAAGGAACAGATGCTAGCTTTTCTCTTCCGGATGCAATGAGCTCTGTAACGTCCTTACCCTTAACATTAGACAGCAGAAGCTCGATTCTGTCCTCATCAATTTCAGCTCCAACTGCAAAATGGTTCAGGAAAGAGAAACTATGA

Protein sequence

MELTSSDSSFSSTFSSFFVSAAAGAAAPPPPPPPAAATATAAPPPEGTDASFSLPDAMSSVTSLPLTLDSRSSILSSSISAPTAKWFRKEKL

Homology

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BLAST of Lsi04G001400 vs. ExPASy TrEMBL
Match: A0A7C9DLY3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-09
Identity = 54/82 (65.85%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 3  LTSSDSSFSSTFSSFFVSAAAGAAAPPPPPPPAAATATA-APPPEGTDASFSLPDAMSSV 62
          ++SSDSSFSST   FF S A  AAAPP   PP  A ATA APPP GT+ASFSLP AMSSV
Sbjct: 1  MSSSDSSFSST---FFSSLAGSAAAPPAAAPPTGAAATATAPPPAGTEASFSLPAAMSSV 60

Query: 63 TSLPLTLDSRSSILSSSISAPT 84
           S PLT D+ +S LSSS S PT
Sbjct: 61 MSFPLTCDNSNSSLSSSGSIPT 79

The following BLAST results are available for this feature:

BLAST of Lsi04G001400 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G001400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7C9DLY3	2.5e-09	65.85	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]

BLAST of Lsi04G001400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of Lsi04G001400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G001400.1	Lsi04G001400.1	mRNA