Lsi04G001370 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G001370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RAB6-interacting golgin
Location	chr04: 1577231 .. 1579072 (-)
RNA-Seq Expression	Lsi04G001370
Synteny	Lsi04G001370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACGAAGTTTATAAGAAAACAAAGAAAATTATGACAAGTAAGAATGGAGGTGGAGGAAATGGCGAGAGAGTCCTATCGGAAGGAAGTATTGGTCAAAACGAAGAAGAGATGGTGTCTAAACTGACCGTATCTACATTGCAAGCTAGGGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTAAAAGAGAAGGTCGAATTTCAGTTAACCCGTGCGGAGGAAGAAGCCAAACGCTTGGCACAAATTTGGGAAGTAAGTTTTATAATTAATCTTTCATGTAACACGCGTAAAGAGGGTACAAGTTTAGGCCCTTTGGTCGCAGAATTATAATGTAAATTCTTCTATTGATTTTAGTTAATTTATTTATGAAGAAACAAAAGAATTAGTCATATGTATGAATATATGAAGAGGTTCATGATTTATAAAAGATAATAATAATGATGATAAGATATAAGATAAAAAAAAAAATGGCTCTAAATTTCTACGCTGAACAAAAATTTATTCCGGAAATAAAATGTTAATATTGAATTTTTGGTGGGATGAAAGTATATAGTACCCTGAATTTATGCCAAAAGACCAAATTTTCTTTGAAAAAGTTAACTGTAGACTACCCATAAAGACTATTTTTAAGATTTATTAAATGGTTGTTTTCAAATATAACAAAATAAACCAAAATATTTATAAATATAACAAAATGTCACTGTTTATCCATTTTGGTACATTCGAAAATATTTATAGTAGTTTTGTCATTTAAAACAATTGCCCTTTATTAAAACTAAAAGTATATATAAACTAAATTTCGGCTACAATGAAACACATTTTAAAGTACGAGAATCAAAATAATATTTCAACCCTAATGGAAAAAAAAAACAATTATCTTGGTGTTGTTTGGTAACCATTTAATTTTTTTTTTGTTTTTAAAAATTAAGCCTATAAACATCATTTTCATCCAATGTTTTGTTGTTTACATTTTTAAAAATATTTTCAAAATCAAAGCCAAATTTTAAAAACTAAAAAAAAGTAGTTTTCAAACTTTTGTTTTTGTTTTCTAAAATTGGGAAAGAATTCAAATGTTTACCTAAGAAATATGAACACCACAAATAGGAAATTAGGAGAAAACAAGCATAAATTTCAAAAAAACAAAAATCGAAAACCAAATAGTTACTAAACGAGGCCATATAATTAAATTTCAAATTCTCAGCTGTGAAATAAAATCTCTAATGCAATCAAAGTAGAAAGCAATATGCATTTTCTTGATAAATAAAGAAACATATTACTATAACAATGTTGTGGATGATGAAGGAGCTGGAAGTAATGGGAGATCCAATGGGGAAGGAAGTTGGTAATGTGCGAAAAAGAATTGACACAGTCAAGAGAGAACTGAAATCTCTGGGACAGATTTGCCAAAAGAAGGTGTTTCCTCAACGACAAGAATTCCTTTGATTCATCTTCTTAAGATTTCATCTTCATTTGTATAAGTGTTTTAAAGCTTGATTTTGATTCTAACCACTAATCTTATAACGCAAGTTTCAAGTTAGAAATGGAAGATATAAGTTGAAAATCATTATTTCTAAATAAATGGTAACAGGAAAAAGAATATAAGGAAGTCCAGGAAATATTCAACGAAAAAGGCAACGAGAAAGCTCAGCTACTTGCTACACTAATGGAGGTATATAATTCTCAACATCATCTGTAAATGTTCCTGCATTTTCTTGGTAACCAAAAATATTTTCTTAAATTATCCATTTATACATGGCCATAATCTTATCAGCTGCTGGGGCAGAGTGAGAAATGGAGGATGAAAAAGCTCGAGGAGTTGAATAAGAATATAGAATCAACGAAC

mRNA sequence

GAGACGAAGTTTATAAGAAAACAAAGAAAATTATGACAAGTAAGAATGGAGGTGGAGGAAATGGCGAGAGAGTCCTATCGGAAGGAAGTATTGGTCAAAACGAAGAAGAGATGGTGTCTAAACTGACCGTATCTACATTGCAAGCTAGGGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTAAAAGAGAAGGTCGAATTTCAGTTAACCCGTGCGGAGGAAGAAGCCAAACGCTTGGCACAAATTTGGGAAGAGCTGGAAGTAATGGGAGATCCAATGGGGAAGGAAGTTGGTAATGTGCGAAAAAGAATTGACACAGTCAAGAGAGAACTGAAATCTCTGGGACAGATTTGCCAAAAGAAGGAAAAAGAATATAAGGAAGTCCAGGAAATATTCAACGAAAAAGGCAACGAGAAAGCTCAGCTACTTGCTACACTAATGGAGCTGCTGGGGCAGAGTGAGAAATGGAGGATGAAAAAGCTCGAGGAGTTGAATAAGAATATAGAATCAACGAAC

Coding sequence (CDS)

ATGACAAGTAAGAATGGAGGTGGAGGAAATGGCGAGAGAGTCCTATCGGAAGGAAGTATTGGTCAAAACGAAGAAGAGATGGTGTCTAAACTGACCGTATCTACATTGCAAGCTAGGGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTAAAAGAGAAGGTCGAATTTCAGTTAACCCGTGCGGAGGAAGAAGCCAAACGCTTGGCACAAATTTGGGAAGAGCTGGAAGTAATGGGAGATCCAATGGGGAAGGAAGTTGGTAATGTGCGAAAAAGAATTGACACAGTCAAGAGAGAACTGAAATCTCTGGGACAGATTTGCCAAAAGAAGGAAAAAGAATATAAGGAAGTCCAGGAAATATTCAACGAAAAAGGCAACGAGAAAGCTCAGCTACTTGCTACACTAATGGAGCTGCTGGGGCAGAGTGAGAAATGGAGGATGAAAAAGCTCGAGGAGTTGAATAAGAATATAGAATCAACGAAC

Protein sequence

MTSKNGGGGNGERVLSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEIFNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN

Homology

[Close]

BLAST of Lsi04G001370 vs. ExPASy TrEMBL
Match: A0A1S3BFW5 (RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103489402 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.3e-71
Identity = 152/161 (94.41%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 1   MTSKNGGGGNGERVLSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60
           MTSKNGGGGNG+RVL EGS  +NE+E VSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR
Sbjct: 1   MTSKNGGGGNGDRVLLEGSNDRNEDETVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60

Query: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEI 120
           AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQ+I
Sbjct: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQDI 120

Query: 121 FNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 162
           FNEK NEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
Sbjct: 121 FNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 161

[Close]

BLAST of Lsi04G001370 vs. ExPASy TrEMBL
Match: A0A0A0KTG1 (RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_5G615265 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.9e-69
Identity = 149/161 (92.55%), Postives = 153/161 (95.03%), Query Frame = 0


Query: 1   MTSKNGGGGNGERVLSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60
           MTSKNGGGGN +RVL EGS  +NE+E VSKLTVSTLQAREEEIERKKMEVKEKVE QLTR
Sbjct: 1   MTSKNGGGGNEDRVLLEGSNDRNEDETVSKLTVSTLQAREEEIERKKMEVKEKVELQLTR 60

Query: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEI 120
           AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQ+I
Sbjct: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQDI 120

Query: 121 FNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 162
           FNEK NEKAQLLATLMELLGQSEKWRMKKLEELNKNIES N
Sbjct: 121 FNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 161

[Close]

BLAST of Lsi04G001370 vs. ExPASy TrEMBL
Match: A0A5D3CFS0 (RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002090 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.6e-67
Identity = 148/161 (91.93%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 1   MTSKNGGGGNGERVLSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60
           MTSKNGGGGNG+RVL EGS  +NE+E VSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR
Sbjct: 1   MTSKNGGGGNGDRVLLEGSNDRNEDETVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60

Query: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEI 120
           AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQ+I
Sbjct: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQDI 120

Query: 121 FNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 162
           FNEK NEKAQLLATLME    SEKWRMKKLEELNKNIESTN
Sbjct: 121 FNEKSNEKAQLLATLME----SEKWRMKKLEELNKNIESTN 157

[Close]

BLAST of Lsi04G001370 vs. ExPASy TrEMBL
Match: A0A6J1D8N9 (RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111018644 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.8e-60
Identity = 135/161 (83.85%), Postives = 145/161 (90.06%), Query Frame = 0


Query: 1   MTSKNGGGGNGERVLSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60
           MTS +GG  NGER   EGS  Q E+EMVSKLTVSTLQAREEEI+RKKMEV+EKVE QL+R
Sbjct: 1   MTSNDGGSRNGERTSIEGSDDQEEDEMVSKLTVSTLQAREEEIDRKKMEVREKVELQLSR 60

Query: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEI 120
           AEEEAKRLAQIWEEL+VM DPM KEVGNVRKRIDTVKRELKSLGQICQKKEKEYKE  EI
Sbjct: 61  AEEEAKRLAQIWEELKVMVDPMRKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKETLEI 120

Query: 121 FNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 162
           FNEK NEKAQLLA LMELLGQSE+WRM+KLEEL+KNIEST+
Sbjct: 121 FNEKSNEKAQLLAALMELLGQSERWRMEKLEELSKNIESTH 161

[Close]

BLAST of Lsi04G001370 vs. ExPASy TrEMBL
Match: A0A6J1HV92 (RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111467754 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.4e-60
Identity = 135/162 (83.33%), Postives = 147/162 (90.74%), Query Frame = 0


Query: 1   MTSKNGGGGNGERVLSEGSIGQNEE-EMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLT 60
           MTSK+G  GNGER++SEGS G++E+ EM  +LTVSTLQAREEEIER+KMEVKEKVE QL+
Sbjct: 1   MTSKHGDEGNGERIVSEGSRGRDEDGEMGKRLTVSTLQAREEEIERRKMEVKEKVELQLS 60

Query: 61  RAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQE 120
           RAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDT K+ELKSLGQICQKKEKEYKEV E
Sbjct: 61  RAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKKEKEYKEVLE 120

Query: 121 IFNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 162
           IFNEK NEKAQLL TLMELL QSE+WRM KLEELNK+I  TN
Sbjct: 121 IFNEKTNEKAQLLTTLMELLDQSERWRMNKLEELNKHIALTN 162

[Close]

BLAST of Lsi04G001370 vs. NCBI nr
Match: XP_008446775.1 (PREDICTED: uncharacterized protein LOC103489402 [Cucumis melo])

HSP 1 Score: 278.1 bits (710), Expect = 4.8e-71
Identity = 152/161 (94.41%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 1   MTSKNGGGGNGERVLSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60
           MTSKNGGGGNG+RVL EGS  +NE+E VSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR
Sbjct: 1   MTSKNGGGGNGDRVLLEGSNDRNEDETVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60

Query: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEI 120
           AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQ+I
Sbjct: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQDI 120

Query: 121 FNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 162
           FNEK NEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
Sbjct: 121 FNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 161

[Close]

BLAST of Lsi04G001370 vs. NCBI nr
Match: XP_004150485.1 (uncharacterized protein LOC101217540 [Cucumis sativus] >KGN52204.1 hypothetical protein Csa_008287 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 1.0e-68
Identity = 149/161 (92.55%), Postives = 153/161 (95.03%), Query Frame = 0


Query: 1   MTSKNGGGGNGERVLSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60
           MTSKNGGGGN +RVL EGS  +NE+E VSKLTVSTLQAREEEIERKKMEVKEKVE QLTR
Sbjct: 1   MTSKNGGGGNEDRVLLEGSNDRNEDETVSKLTVSTLQAREEEIERKKMEVKEKVELQLTR 60

Query: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEI 120
           AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQ+I
Sbjct: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQDI 120

Query: 121 FNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 162
           FNEK NEKAQLLATLMELLGQSEKWRMKKLEELNKNIES N
Sbjct: 121 FNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 161

[Close]

BLAST of Lsi04G001370 vs. NCBI nr
Match: KAA0034665.1 (uncharacterized protein E6C27_scaffold65G006840 [Cucumis melo var. makuwa] >TYK09216.1 uncharacterized protein E5676_scaffold475G002090 [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 3.2e-67
Identity = 148/161 (91.93%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 1   MTSKNGGGGNGERVLSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60
           MTSKNGGGGNG+RVL EGS  +NE+E VSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR
Sbjct: 1   MTSKNGGGGNGDRVLLEGSNDRNEDETVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60

Query: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEI 120
           AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQ+I
Sbjct: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQDI 120

Query: 121 FNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 162
           FNEK NEKAQLLATLME    SEKWRMKKLEELNKNIESTN
Sbjct: 121 FNEKSNEKAQLLATLME----SEKWRMKKLEELNKNIESTN 157

[Close]

BLAST of Lsi04G001370 vs. NCBI nr
Match: XP_038892385.1 (uncharacterized protein LOC120081508 [Benincasa hispida])

HSP 1 Score: 249.6 bits (636), Expect = 1.8e-62
Identity = 140/161 (86.96%), Postives = 146/161 (90.68%), Query Frame = 0


Query: 1   MTSKNGGGGNGERVLSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60
           MTSKNG GGN           +NE+EM+SKLT+STLQAREEEIE+KKMEVKEKVEFQLTR
Sbjct: 1   MTSKNGSGGN----------DRNEDEMMSKLTISTLQAREEEIEKKKMEVKEKVEFQLTR 60

Query: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEI 120
           AEEEAKRLAQIWEELEVMGDPM KEVGNVRKRIDTVKRELKSLGQICQKKEKE KEVQ+I
Sbjct: 61  AEEEAKRLAQIWEELEVMGDPMEKEVGNVRKRIDTVKRELKSLGQICQKKEKECKEVQDI 120

Query: 121 FNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 162
           FNEK NEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN
Sbjct: 121 FNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 151

[Close]

BLAST of Lsi04G001370 vs. NCBI nr
Match: XP_022150510.1 (uncharacterized protein LOC111018644 [Momordica charantia])

HSP 1 Score: 241.9 bits (616), Expect = 3.8e-60
Identity = 135/161 (83.85%), Postives = 145/161 (90.06%), Query Frame = 0


Query: 1   MTSKNGGGGNGERVLSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60
           MTS +GG  NGER   EGS  Q E+EMVSKLTVSTLQAREEEI+RKKMEV+EKVE QL+R
Sbjct: 1   MTSNDGGSRNGERTSIEGSDDQEEDEMVSKLTVSTLQAREEEIDRKKMEVREKVELQLSR 60

Query: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEI 120
           AEEEAKRLAQIWEEL+VM DPM KEVGNVRKRIDTVKRELKSLGQICQKKEKEYKE  EI
Sbjct: 61  AEEEAKRLAQIWEELKVMVDPMRKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKETLEI 120

Query: 121 FNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 162
           FNEK NEKAQLLA LMELLGQSE+WRM+KLEEL+KNIEST+
Sbjct: 121 FNEKSNEKAQLLAALMELLGQSERWRMEKLEELSKNIESTH 161

[Close]

BLAST of Lsi04G001370 vs. TAIR 10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 151.8 bits (382), Expect = 4.8e-37
Identity = 87/145 (60.00%), Postives = 109/145 (75.17%), Query Frame = 0


Query: 15  LSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEE 74
           +S  S    E+E +S+  +S  +A+EEEIE+KKME++E+V+ QL R EEE KRLA I EE
Sbjct: 32  MSFSSQMSKEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALIREE 91

Query: 75  LEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEIFNEKGNEKAQLLAT 134
           LE + DPM KEV  VRK+ID+V +ELK LG   QKKE+EYKE  E FNEK  EK QL+  
Sbjct: 92  LEGLADPMRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLITR 151

Query: 135 LMELLGQSEKWRMKKLEELNKNIES 160
           LMEL+G+SEK RMKKLEEL+KNI+S
Sbjct: 152 LMELVGESEKMRMKKLEELSKNIDS 176

[Close]

BLAST of Lsi04G001370 vs. TAIR 10
Match: AT3G52900.1 (Family of unknown function (DUF662) )

HSP 1 Score: 151.0 bits (380), Expect = 8.3e-37
Identity = 91/160 (56.88%), Postives = 113/160 (70.62%), Query Frame = 0


Query: 1   MTSKNGGGG---NGERVLSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQ 60
           M+SKN  G    +G     +  +  NEEE + K+ V+  QAREEEIERKKM VKEKV+ +
Sbjct: 1   MSSKNNSGAAAVSGVNTNGKLPMEDNEEEEIWKVAVTRFQAREEEIERKKMTVKEKVQQR 60

Query: 61  LTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEV 120
           L  AEE  + L Q  EELE+MGDPM KEVG VRK+ID   R++KSL Q CQKKEKEYK+ 
Sbjct: 61  LGFAEEATRCLTQTLEELEIMGDPMRKEVGMVRKKIDMANRDIKSLAQSCQKKEKEYKDT 120

Query: 121 QEIFNEKGNEKAQLLATLMELLGQSEKWRMKKLEELNKNI 158
            E FNEK  EKA L++ LMELL +SE+ R+KKLEE+NK +
Sbjct: 121 LEAFNEKNKEKAHLVSMLMELLAESERLRIKKLEEINKTV 160

[Close]

BLAST of Lsi04G001370 vs. TAIR 10
Match: AT3G52920.2 (Family of unknown function (DUF662) )

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-34
Identity = 80/145 (55.17%), Postives = 109/145 (75.17%), Query Frame = 0


Query: 15  LSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEE 74
           LS  S    E+E +++  +S  +A+E+EIE++KMEV+E+V+ QL R EEE +RLA I EE
Sbjct: 18  LSFSSQMSKEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIREE 77

Query: 75  LEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEIFNEKGNEKAQLLAT 134
           LE M DPM KEV  VRK+ID+V +ELK LG   QKKE+EYKE  + FNEK  EK QL+  
Sbjct: 78  LETMADPMRKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLITK 137

Query: 135 LMELLGQSEKWRMKKLEELNKNIES 160
           LMEL+G+SEK R+KKL+EL+++I++
Sbjct: 138 LMELVGESEKLRLKKLDELSRSIDT 162

[Close]

BLAST of Lsi04G001370 vs. TAIR 10
Match: AT2G36410.2 (Family of unknown function (DUF662) )

HSP 1 Score: 141.0 bits (354), Expect = 8.5e-34
Identity = 82/155 (52.90%), Postives = 112/155 (72.26%), Query Frame = 0


Query: 10  NGERVLSEGSIG-----QNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTRAEEE 69
           + E VL  GS+        E+E +++  +S  +A+E+EIE+++MEV+E+++ QL R E+E
Sbjct: 37  SNEMVLHTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQE 96

Query: 70  AKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEIFNEK 129
            KRL+ I EELE M DPM KEV  VRK+ID+V +ELK LG   QKKE+EYKE  + FNEK
Sbjct: 97  TKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEK 156

Query: 130 GNEKAQLLATLMELLGQSEKWRMKKLEELNKNIES 160
             EK QL+  LMEL+G+SEK RM KLEEL+K+IE+
Sbjct: 157 NREKVQLITKLMELVGESEKLRMIKLEELSKSIET 191

[Close]

BLAST of Lsi04G001370 vs. TAIR 10
Match: AT5G03660.1 (Family of unknown function (DUF662) )

HSP 1 Score: 137.9 bits (346), Expect = 7.2e-33
Identity = 80/146 (54.79%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 15  LSEGSIGQNEEEMVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTRAEEEAKRLAQIWEE 74
           +S  S  + E++ +S   +S  +A+EEEIE+KKME++E+V+ QL R E+E+KRLA I EE
Sbjct: 26  MSFSSQMKKEDDELSMKALSAFKAKEEEIEKKKMEIRERVQAQLGRVEDESKRLAMIREE 85

Query: 75  LEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQEIFNEKGNEKAQLLAT 134
           LE   DPM KEV  VRK+ID++ +ELK LG   QKKE EYK+  E FNEK  EK +L+  
Sbjct: 86  LEGFADPMRKEVTMVRKKIDSLDKELKPLGNTVQKKETEYKDALEAFNEKNKEKVELITK 145

Query: 135 LMELLGQSEKWRMKKLEELNKNIEST 161
           L EL G+SEK+R KKLEEL+KNI+ T
Sbjct: 146 LQELEGESEKFRFKKLEELSKNIDLT 171

The following BLAST results are available for this feature:

BLAST of Lsi04G001370 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G001370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BFW5	2.3e-71	94.41	RAB6-interacting golgin OS=Cucumis melo OX=3656 GN=LOC103489402 PE=3 SV=1	[more]
A0A0A0KTG1	4.9e-69	92.55	RAB6-interacting golgin OS=Cucumis sativus OX=3659 GN=Csa_5G615265 PE=3 SV=1	[more]
A0A5D3CFS0	1.6e-67	91.93	RAB6-interacting golgin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1D8N9	1.8e-60	83.85	RAB6-interacting golgin OS=Momordica charantia OX=3673 GN=LOC111018644 PE=3 SV=1	[more]
A0A6J1HV92	2.4e-60	83.33	RAB6-interacting golgin OS=Cucurbita maxima OX=3661 GN=LOC111467754 PE=3 SV=1	[more]

BLAST of Lsi04G001370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446775.1	4.8e-71	94.41	PREDICTED: uncharacterized protein LOC103489402 [Cucumis melo]	[more]
XP_004150485.1	1.0e-68	92.55	uncharacterized protein LOC101217540 [Cucumis sativus] >KGN52204.1 hypothetical ...	[more]
KAA0034665.1	3.2e-67	91.93	uncharacterized protein E6C27_scaffold65G006840 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_038892385.1	1.8e-62	86.96	uncharacterized protein LOC120081508 [Benincasa hispida]	[more]
XP_022150510.1	3.8e-60	83.85	uncharacterized protein LOC111018644 [Momordica charantia]	[more]

BLAST of Lsi04G001370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09980.1	4.8e-37	60.00	Family of unknown function (DUF662)	[more]
AT3G52900.1	8.3e-37	56.88	Family of unknown function (DUF662)	[more]
AT3G52920.2	5.0e-34	55.17	Family of unknown function (DUF662)	[more]
AT2G36410.2	8.5e-34	52.90	Family of unknown function (DUF662)	[more]
AT5G03660.1	7.2e-33	54.79	Family of unknown function (DUF662)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 150..161
None	No IPR available	COILS	Coil	Coil	coord: 93..113
None	No IPR available	COILS	Coil	Coil	coord: 33..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR21470:SF3	RAB6-INTERACTING GOLGIN (DUF662)	coord: 19..160
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 19..159 e-value: 3.5E-62 score: 208.8
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	RAB6-INTERACTING PROTEIN GORAB	coord: 19..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G001370.1	Lsi04G001370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity