Lsi04G001240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G001240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Period circadian protein
Location	chr04: 1398467 .. 1400380 (+)
RNA-Seq Expression	Lsi04G001240
Synteny	Lsi04G001240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGTTGAACTATGTTCATCTGAACAAATTTTTACCAATATAATAGAATAAATTTACTAACTTGTAAATGTTACACTATTTCAATTATTTTTCTTGATGAACTTATCAGAGTATTTTACTTGACTTGATGAACTCAATAGAGTATAAGTATATGCACAAAAGAACAATAAATCCTTGTAAAGAAAAATATTCTTTCACGTAAGGTTGAGTCCTTTACAAAAACACATCCCTCCCCAAAAAGTATTAGATTTTACGTGATAGCATGGTGAATTTGTAATTCAAGTAAAATGTGATATGCCAAACAAGGAATATTTGGGCACTGGTGTGTGGTATTTAGCACAATGCGTCTGATGCCTAAGTTAGCAAAACACTTTTGATTCTAGCAAGAATAGTTGTAGGGATGAGAGACTTCTTTCCTTTAGAGTTATGACAATGTATATATAGGCTAGCTAACCTAAAATTTCTCCTTCTACTCTTAGGATTTGAATTCTCAAATATCTGATCTTCTCTCAATCATCAATTATTGGGCTATGGGAGTACAAATTGCACACCCCGAAAGTGACTCTTAATGGGCCTTGACTTGTGGCTCACCTAGCCCAAGGCCCATTTGAGTCGGACATTTGGACGAGTATTTTAGTTTTAGGTTTTATCTAGTGTCCCATTTGAACTTGAATATCAGAAAGTTTATCTTGTATCCTTTTTTAGTGCAAATTTACTCATAAAATCACTAACAGAGGATCTAAGATCGACTTATAAAAGTTGTTTAAATTAATACAATTATTAATTTAAAGTTTTTATTGATACAACTCTAGGTATTGATTTTTTCTAAGGCATACTGATCCTATTTTGAGAACGATAAAAAAAATAGAAATTCAAATTATAAAAACAAGAAGTTAATTTCTCCGAAGCATAAATATGTAATTTTTCAATAAAATCATTGATAATTCAATTAATAATAATAATTAAAACAACTATGTAATTCACAATCAAACAAGCGCCCATGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGGCGATTGTGTGTTCGAGTCCCACTGGGCGTGCATTATTATTTTTCTTTCCTTTTCTATGGTACTAGAAATAAGATTTTAGTATTCAAAAAAAAAAAAAAGGTCAGAATTCTATTTTCAAATGAATATATTCTAATCAAATCGCCTTCCAACTCATAATTATATGAGCAAAACTTAATTTTACCCTCTATTAGCGATAGACCGCGATCGAAGACAATAAAATTTTTATATATTTGTAAATAGATTAATATATATTTTTATAATAATTTTTTTAAAATCAACTTGTTTGCAAAAAAAATAATGAATTATGTATAAATTTTTCTGTTTCTTTTTCTTTTTTTTTCATCTTTAAAAGGTTAAATCATCATCTTTGCTCAAAATTTGATTAGGAAAAGTGAAATATATCGATTTTCTCATCATCTACAATGCAAACTCTCTTTACACGTGACCAAATTAAGCATAATAAATAAAAATTAATTATCAACTAGGATCATATCTCAAAACGAGCATTGTTTGAAAACCCTAATATATATAATTTAATACATATTCAGTTTCAAGGTAAAGCTTCATAAATAAAAAATAAAATAATAATAAAAAAAGAAGCTAAAGCTAAAGAGCCTCCGGAAAACGTAAATCTGCAGGGCCAGGACCCAAAATCCCCTTCTGTTCACTAATCTTGCCTAGCCCAGGGAGGGAGATTGGGACCACAACTGGAACTGGAACGGTAACTGAAACTGGAACCGGAACCGCAACAACTGGAACCGGAACCGGAACAGGAACAGGAACCGGAACCGGACCAGAAACATGTTCTGCCTGTACACTTCTTTCTTCATCTCGCCACACACTCCCCTGCCACTCTATCTATAAAACCAAATAA

mRNA sequence

ATGTTAAGTATTTTACTTGACTTGATGAACTCAATAGAGTATAAAGCCTCCGGAAAACGTAAATCTGCAGGGCCAGGACCCAAAATCCCCTTCTGTTCACTAATCTTGCCTAGCCCAGGGAGGGAGATTGGGACCACAACTGGAACTGGAACGGTAACTGAAACTGGAACCGGAACCGCAACAACTGGAACCGGAACCGGAACAGGAACAGGAACCGGAACCGGACCAGAAACATGTTCTGCCTGTACACTTCTTTCTTCATCTCGCCACACACTCCCCTGCCACTCTATCTATAAAACCAAATAA

Coding sequence (CDS)

ATGTTAAGTATTTTACTTGACTTGATGAACTCAATAGAGTATAAAGCCTCCGGAAAACGTAAATCTGCAGGGCCAGGACCCAAAATCCCCTTCTGTTCACTAATCTTGCCTAGCCCAGGGAGGGAGATTGGGACCACAACTGGAACTGGAACGGTAACTGAAACTGGAACCGGAACCGCAACAACTGGAACCGGAACCGGAACAGGAACAGGAACCGGAACCGGACCAGAAACATGTTCTGCCTGTACACTTCTTTCTTCATCTCGCCACACACTCCCCTGCCACTCTATCTATAAAACCAAATAA

Protein sequence

MLSILLDLMNSIEYKASGKRKSAGPGPKIPFCSLILPSPGREIGTTTGTGTVTETGTGTATTGTGTGTGTGTGTGPETCSACTLLSSSRHTLPCHSIYKTK

Homology

[Close]

BLAST of Lsi04G001240 vs. ExPASy Swiss-Prot
Match: Q03353 (Period circadian protein (Fragments) OS=Drosophila mauritiana OX=7226 GN=per PE=3 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-04
Identity = 33/51 (64.71%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 40  GREIGTTTGTGTVTETGTGTAT-TGTGTGTGTGTGTGPETCSACTLLSSSR 90
           G   GT TGTGT T TGTGT T TGTGTGTGTGTG G  +C+     SSSR
Sbjct: 608 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGTNSCTGTGTTSSSR 658

[Close]

BLAST of Lsi04G001240 vs. ExPASy Swiss-Prot
Match: Q04537 (Period circadian protein (Fragment) OS=Drosophila serrata OX=7274 GN=per PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.6e-04
Identity = 38/70 (54.29%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 15 KASGKRKSAG---PGPKIPFCSLILPSPGREIGTTTGTGTVTETGTGTAT-TGTGTGTGT 74
          + SG   S+G    G  +   S+   S G   GT TGTGT T TGTGT T TGTGTGTGT
Sbjct: 1  EGSGGSGSSGHFTTGSNVHMSSVTNTSNGGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGT 60

Query: 75 GTGTGPETCS 81
          GTGTG  T S
Sbjct: 61 GTGTGTGTAS 70

[Close]

BLAST of Lsi04G001240 vs. NCBI nr
Match: WP_218512096.1 (hypothetical protein [Salmonella enterica])

HSP 1 Score: 53.9 bits (128), Expect = 9.3e-04
Identity = 43/80 (53.75%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 13  EYKASGKRKSAG-PGPKIPFCSLILPSPGREIGTTTGTGTVTETGTGTAT-TGTGTGTGT 72
           +YK S  R S   P P   F  + LP  G   GT TGTGT T TGTGT T TGTGTGTGT
Sbjct: 369 DYKDSMHRPSFNPPTPDDDFKPVPLPGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 428

Query: 73  GTGTGPETCSACTLLSSSRH 91
           GTGTG  T S  T ++ + H
Sbjct: 429 GTGTGTGTTSGTTPVNVNVH 448

The following BLAST results are available for this feature:

BLAST of Lsi04G001240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03353	3.3e-04	64.71	Period circadian protein (Fragments) OS=Drosophila mauritiana OX=7226 GN=per PE=...	[more]
Q04537	5.6e-04	54.29	Period circadian protein (Fragment) OS=Drosophila serrata OX=7274 GN=per PE=3 SV...	[more]

BLAST of Lsi04G001240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G001240 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_218512096.1	9.3e-04	53.75	hypothetical protein [Salmonella enterica]	[more]

BLAST of Lsi04G001240 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G001240.1	Lsi04G001240.1	mRNA