Lsi04G000830 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G000830
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	thioredoxin-like 3-2, chloroplastic
Location	chr04: 992328 .. 994783 (-)
RNA-Seq Expression	Lsi04G000830
Synteny	Lsi04G000830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTTCAATTTATTTATTTTTGTTATTTAATTGGATTTCTGAAATCTAAAAAAAGAAAAACAAAGAAATTATTTGGTTTCTTAATTCTCTATGGTTTTTTGTTTTCTTCAACAAAACCAAATGGCGTTTCGTTAAGGTTTCACAGTGAAATCCATCGGAACAATCTCTGATTGACTCTGATTCTCCCGGTGGGACTCCACCGGAACCATCTCTAAGCCGCCGCCGCCGCCGCCACTCCGATCAAACCCACCACCCTCTGCCTTTTGAATTTTTCTTTTTCTCTTTCCTTTGCTGTTTCCCAATTCTTCTCCCCTTCCGAAATGGTCAAAGCTTTGCCCCTTCACCTCGGAATCGTGAAATCTTTTCCCAAATTCGACGGTTCTTTTGATCTTCCTCCACCTCCCCAACTTCCGTCCGCGAGGCTCGCCGTCTCTGGTTTCAACAGGCTTCCTTTGTCCCGGAAATTTCCGCCGTCTTTCCAGAAAGTTTCTGCGACTGGTGAGAAGACTTCGCTGCTCGGAGCTTGGACCCAAGACAGTACCCTGCAATTTCGAGATGAATCGCCTGTTTCGATTGAACTCAAGTCCATTTGCAGTGAACTTGAGTTCGATAAGGCTATTGCAGATGCGGAGAAACGCAACGAGCTCGTGATTCTTGTATGGTATGTATACATTTCTTGTGGGCTTTTTCTGGGAAATGTTGAGTTAATTACGGAAGTTTCTTACAAAGCGTTTTTCGGCTAATAAGTTTTAGATAGAAATCTAGACGATGTGAATGTATTTGAGTTTAACTGGATCTTGTTTGATTAGGAATTTATTTGTTTATTAGGAAAAATTGTTCCCAACTGCTAGATTTTCCCTGGGCTTTCACTGAAATTAACTAACCTTCGTAGTACATTGATTGTGATCATTTGGAAGTGAATGGTGTGATATTTTTCTCCAGTTTTCCTTACAAGCCTTTCAAGTACATTTCTCATAATTTTATCTTCTTTAGTTGAAAAGTGAATTTATGTGGATCTGTAGGATGGCTAACTGGTGCAGAAATTATATTTATTTAAAACCCCAACTGGAAAGATTGGCTGCTGATTATTACCCCAGGTTAGCTTCTAGCCCATTTCTTCTGACCAACCAGATGGCTAAGATTGAACTATTTTATCATTCTCAATGTGCTGGATAATACTTAAAAGACCAGTGTGCCGGTCCTTATTGAAGTTGTGTATGTGCTTGATGAATTGTAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCTGGATTAGCTGTAAGTTCCTTTCAAAGCATTGTGATATTTTTCCCATTTTGTTTGTGTTGCCATAAACCTTTATAATGATCTTTTTTAGGTAGGACTCGAGGTTATGATAAATTCTTCTTCTCTGAGGGAGTGATTTTCTTTGGATATTGTACTTGTGGTTCTCGTTACAATGGAAATTAGGACTTGTGTTTCATTACCATCAGGAACATTTCCGATTTGCAGTTTAGACAGAGACAGTAGACATCTTGAGTTTGTGTTACTTTGATGGATTAGTTGATTGAATAAACTACATTATCTGTTTAATCTTTCATTCTAATATGTCCAAACATAAAATCTTTCCATTCCTTGGTTGATACAAATTCTGATAGTTTTGATTTTGTACGTTTTCTCATGTATCTCAACCGTTCGTCTTTGAATCATCCAGAAGATGCCAGCTATACAGGTGAGTTTCCTGACAATCAAATGTCTTACAGCAGGAAACCTTCCTCTCTACTAATATCAAGATCTTCATTATGTTTGTTGCAGCTATGGAAGGATGGTAAGAAACAAGATGAGGTGATTGGTCTCTACAAAGCATATTTAGTCGTCAACGATGTTCAGAAAATGATTGAACGTGAGCTAACAGGCGAGTGACTTGCGATTCATTTTTACCCTCATCCTCTTATCCACTTAGTGGCATTAAAATTGATAGATAGCATCTCACAGAAATTTCTTTCTGCTTATATTCATCAACATAAAGAACAAGGCCTGGCTGGCCCTTCTTGCCAAGTCTTTGTCATTGCAGAGATCATTTCTTTGTTGTCATGGGGTGGATGATCTAACATGTATGTCCAATTCTTGACAATATACACATTGTGAGGAAGTCTTATTTGTAAGGTTTACCATCCTTTTTATACCATTTCCTTTCCCTTATATCTGATATGCAGAGGCCCCTGTTTTGTGTTGGTAGATTAATTTATTTGTTCAGGGATCTATTATGAATAACATTTCTCTTTCTGAGTCTTCTGGATCTCTCTGCATTAAAAATTGATGGATGGTGCCTTGAAAATCACTTGAGGAATGAATTTGAGGGACCTTGAACAGTGAAAAGAGCTACAAATGGTGGTCCTTGAGGTTCTTTTCTTTCTAAATGATAAAAAATCATAGAACCTTTTCTTTTCT

mRNA sequence

CGCTTCAATTTATTTATTTTTGTTATTTAATTGGATTTCTGAAATCTAAAAAAAGAAAAACAAAGAAATTATTTGGTTTCTTAATTCTCTATGGTTTTTTGTTTTCTTCAACAAAACCAAATGGCGTTTCGTTAAGGTTTCACAGTGAAATCCATCGGAACAATCTCTGATTGACTCTGATTCTCCCGGTGGGACTCCACCGGAACCATCTCTAAGCCGCCGCCGCCGCCGCCACTCCGATCAAACCCACCACCCTCTGCCTTTTGAATTTTTCTTTTTCTCTTTCCTTTGCTGTTTCCCAATTCTTCTCCCCTTCCGAAATGGTCAAAGCTTTGCCCCTTCACCTCGGAATCGTGAAATCTTTTCCCAAATTCGACGGTTCTTTTGATCTTCCTCCACCTCCCCAACTTCCGTCCGCGAGGCTCGCCGTCTCTGGTTTCAACAGGCTTCCTTTGTCCCGGAAATTTCCGCCGTCTTTCCAGAAAGTTTCTGCGACTGGTGAGAAGACTTCGCTGCTCGGAGCTTGGACCCAAGACAGTACCCTGCAATTTCGAGATGAATCGCCTGTTTCGATTGAACTCAAGTCCATTTGCAGTGAACTTGAGTTCGATAAGGCTATTGCAGATGCGGAGAAACGCAACGAGCTCGTGATTCTTGTATGGATGGCTAACTGGTGCAGAAATTATATTTATTTAAAACCCCAACTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCTGGATTAGCTCTATGGAAGGATGGTAAGAAACAAGATGAGGTGATTGGTCTCTACAAAGCATATTTAGTCGTCAACGATGTTCAGAAAATGATTGAACGTGAGCTAACAGGCGAGTGACTTGCGATTCATTTTTACCCTCATCCTCTTATCCACTTAGTGGCATTAAAATTGATAGATAGCATCTCACAGAAATTTCTTTCTGCTTATATTCATCAACATAAAGAACAAGGCCTGGCTGGCCCTTCTTGCCAAGTCTTTGTCATTGCAGAGATCATTTCTTTGTTGTCATGGGGTGGATGATCTAACATGTATGTCCAATTCTTGACAATATACACATTGTGAGGAAGTCTTATTTGTAAGGTTTACCATCCTTTTTATACCATTTCCTTTCCCTTATATCTGATATGCAGAGGCCCCTGTTTTGTGTTGGTAGATTAATTTATTTGTTCAGGGATCTATTATGAATAACATTTCTCTTTCTGAGTCTTCTGGATCTCTCTGCATTAAAAATTGATGGATGGTGCCTTGAAAATCACTTGAGGAATGAATTTGAGGGACCTTGAACAGTGAAAAGAGCTACAAATGGTGGTCCTTGAGGTTCTTTTCTTTCTAAATGATAAAAAATCATAGAACCTTTTCTTTTCT

Coding sequence (CDS)

ATGGTCAAAGCTTTGCCCCTTCACCTCGGAATCGTGAAATCTTTTCCCAAATTCGACGGTTCTTTTGATCTTCCTCCACCTCCCCAACTTCCGTCCGCGAGGCTCGCCGTCTCTGGTTTCAACAGGCTTCCTTTGTCCCGGAAATTTCCGCCGTCTTTCCAGAAAGTTTCTGCGACTGGTGAGAAGACTTCGCTGCTCGGAGCTTGGACCCAAGACAGTACCCTGCAATTTCGAGATGAATCGCCTGTTTCGATTGAACTCAAGTCCATTTGCAGTGAACTTGAGTTCGATAAGGCTATTGCAGATGCGGAGAAACGCAACGAGCTCGTGATTCTTGTATGGATGGCTAACTGGTGCAGAAATTATATTTATTTAAAACCCCAACTGGAAAGATTGGCTGCTGATTATTACCCCAGATTGCAATTCTACTGCATTGATGTCAATATGGTGCCACACAAGCTAGTTGTTCGTGCTGGATTAGCTCTATGGAAGGATGGTAAGAAACAAGATGAGGTGATTGGTCTCTACAAAGCATATTTAGTCGTCAACGATGTTCAGAAAATGATTGAACGTGAGCTAACAGGCGAGTGA

Protein sequence

MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAVSGFNRLPLSRKFPPSFQKVSATGEKTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLALWKDGKKQDEVIGLYKAYLVVNDVQKMIERELTGE

Homology

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BLAST of Lsi04G000830 vs. ExPASy Swiss-Prot
Match: Q8VZT6 (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.7e-39
Identity = 83/171 (48.54%), Postives = 114/171 (66.67%), Query Frame = 0


Query: 28  PQLPSARLAVSGFNRLPLSRKFPPSFQKVSATGEKTSLLGAWTQDSTLQFRDESPVSIEL 87
           P +P  R   S F+R P + K+     K+    E+   +    QD  LQ  D+SPVS+EL
Sbjct: 20  PLVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVEL 79

Query: 88  KSICSELEFDKAIADAEKRNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDV 147
             IC E  FD+ + DA+K  E V++VWMA WCR  IYLKP+LE+LAA++YPRL+FY +DV
Sbjct: 80  GPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV 139

Query: 148 NMVPHKLVVRAG------LALWKDGKKQDEVIGLYKAYLVVNDVQKMIERE 193
           N VP++LV RAG      + LW+DG+KQ EVIG +KA+ VVN+V++MIE +
Sbjct: 140 NAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

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BLAST of Lsi04G000830 vs. ExPASy Swiss-Prot
Match: Q9FG36 (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 102.8 bits (255), Expect = 4.4e-21
Identity = 47/116 (40.52%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 82  PVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQ 141
           P ++E++ I +  E D  ++ A + ++ +I+ WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRAGLA------LWKDGKKQDEVIGLYKAYLVVNDVQKMIER 192
           FY +DVN VP  LV R  ++      LWK+ + ++EVIG +K +LV+ +V+++I +
Sbjct: 153 FYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINK 208

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BLAST of Lsi04G000830 vs. ExPASy Swiss-Prot
Match: Q6Z7L3 (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-18
Identity = 46/113 (40.71%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 85  IELKSICSELEFDKAIADAEKRNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYC 144
           +E++ I S  + D A+  + +  + +I+ WMA+WCR  IYLKP+LE++A + +P ++FY 
Sbjct: 80  VEMEEIDSMEKLDDALRWSVENKQPIIIDWMASWCRKCIYLKPRLEKIAGE-FPGVRFYF 139

Query: 145 IDVNMVPHKLVVRAGLA------LWKDGKKQDEVIGLYKAYLVVNDVQKMIER 192
           +DVN VP  +V R  +       LWKDG+   EVIG +KA+LV+++V++MI++
Sbjct: 140 VDVNKVPQTVVKRGNITKMPTIQLWKDGEWAAEVIGGHKAWLVMDEVREMIQK 191

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BLAST of Lsi04G000830 vs. ExPASy TrEMBL
Match: A0A1S3BGW0 (thioredoxin-like 3-2, chloroplastic isoform X9 OS=Cucumis melo OX=3656 GN=LOC103489448 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.1e-98
Identity = 184/201 (91.54%), Postives = 187/201 (93.03%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAVSGFNRLPLSRKFPPSFQKVSATG 60
           MVKALPLHLGIVKSFPKFD SFDLPP PQL SARL  SGFNRLPLSRKFPP FQKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCR 120
           EKTSLLGAWTQDS LQFRDESPVSIELKSI SELEFDKAIADAE+RNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA-----LWKDGKKQDEVIGL 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA     LWKDGKKQDEV+GL
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAMPAIQLWKDGKKQDEVVGL 180

Query: 181 YKAYLVVNDVQKMIERELTGE 197
           YKAYLVVNDV+KMIERELT E
Sbjct: 181 YKAYLVVNDVRKMIERELTDE 201

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BLAST of Lsi04G000830 vs. ExPASy TrEMBL
Match: A0A5D3CG32 (Thioredoxin-like 3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002530 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.9e-98
Identity = 184/202 (91.09%), Postives = 187/202 (92.57%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAVSGFNRLPLSRKFPPSFQKVSATG 60
           MVKALPLHLGIVKSFPKFD SFDLPP PQL SARL  SGFNRLPLSRKFPP FQKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCR 120
           EKTSLLGAWTQDS LQFRDESPVSIELKSI SELEFDKAIADAE+RNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA      LWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 197
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of Lsi04G000830 vs. ExPASy TrEMBL
Match: A0A1S3BGQ4 (thioredoxin-like 3-2, chloroplastic isoform X8 OS=Cucumis melo OX=3656 GN=LOC103489448 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 7.9e-98
Identity = 184/202 (91.09%), Postives = 187/202 (92.57%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAVSGFNRLPLSRKFPPSFQKVSATG 60
           MVKALPLHLGIVKSFPKFD SFDLPP PQL SARL  SGFNRLPLSRKFPP FQKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCR 120
           EKTSLLGAWTQDS LQFRDESPVSIELKSI SELEFDKAIADAE+RNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA      LWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 197
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of Lsi04G000830 vs. ExPASy TrEMBL
Match: A0A1S3BG27 (thioredoxin-like 3-2, chloroplastic isoform X7 OS=Cucumis melo OX=3656 GN=LOC103489448 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.3e-97
Identity = 184/206 (89.32%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAVSGFNRLPLSRKFPPSFQKVSATG 60
           MVKALPLHLGIVKSFPKFD SFDLPP PQL SARL  SGFNRLPLSRKFPP FQKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCR 120
           EKTSLLGAWTQDS LQFRDESPVSIELKSI SELEFDKAIADAE+RNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA----------LWKDGKKQD 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA          LWKDGKKQD
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAVGLEKMPAIQLWKDGKKQD 180

Query: 181 EVIGLYKAYLVVNDVQKMIERELTGE 197
           EV+GLYKAYLVVNDV+KMIERELT E
Sbjct: 181 EVVGLYKAYLVVNDVRKMIERELTDE 206

[Close]

BLAST of Lsi04G000830 vs. ExPASy TrEMBL
Match: A0A0A0KUX7 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G622670 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 7.4e-96
Identity = 181/202 (89.60%), Postives = 185/202 (91.58%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAVSGFNRLPLSRKFPPSFQKVSATG 60
           MVKALPLH GIVKSFPKF  SFDLPP PQL SARLA SGFNRLPLSRKFPP FQKVSATG
Sbjct: 1   MVKALPLHHGIVKSFPKFGSSFDLPPSPQLLSARLAGSGFNRLPLSRKFPPLFQKVSATG 60

Query: 61  EKTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCR 120
           EKTSL GAWTQDS LQFRDESPVSIELKSI SELEFDKAIADAE+RNELVILVWMANWCR
Sbjct: 61  EKTSLFGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVN+VPHKLVVRAGLA      LWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNVVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 197
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of Lsi04G000830 vs. NCBI nr
Match: XP_038891539.1 (thioredoxin-like 3-2, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 379.8 bits (974), Expect = 1.4e-101
Identity = 191/202 (94.55%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAVSGFNRLPLSRKFPPSFQKVSATG 60
           MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLA SGFNRLPL RKFPP  QKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAGSGFNRLPLCRKFPPLSQKVSATG 60

Query: 61  EK-TSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWC 120
           EK TSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWC
Sbjct: 61  EKTTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWC 120

Query: 121 RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA-----LWKDGKKQDEVIG 180
           RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA     LWKDGKKQDEVIG
Sbjct: 121 RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAMPAIQLWKDGKKQDEVIG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 197
           LYKAYLV+NDVQKMIERELTGE
Sbjct: 181 LYKAYLVINDVQKMIERELTGE 202

[Close]

BLAST of Lsi04G000830 vs. NCBI nr
Match: XP_038891538.1 (thioredoxin-like 3-2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 379.4 bits (973), Expect = 1.9e-101
Identity = 191/203 (94.09%), Postives = 192/203 (94.58%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAVSGFNRLPLSRKFPPSFQKVSATG 60
           MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLA SGFNRLPL RKFPP  QKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAGSGFNRLPLCRKFPPLSQKVSATG 60

Query: 61  EK-TSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWC 120
           EK TSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWC
Sbjct: 61  EKTTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWC 120

Query: 121 RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA------LWKDGKKQDEVI 180
           RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA      LWKDGKKQDEVI
Sbjct: 121 RNYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVI 180

Query: 181 GLYKAYLVVNDVQKMIERELTGE 197
           GLYKAYLV+NDVQKMIERELTGE
Sbjct: 181 GLYKAYLVINDVQKMIERELTGE 203

[Close]

BLAST of Lsi04G000830 vs. NCBI nr
Match: XP_008446853.1 (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X9 [Cucumis melo])

HSP 1 Score: 366.7 bits (940), Expect = 1.3e-97
Identity = 184/201 (91.54%), Postives = 187/201 (93.03%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAVSGFNRLPLSRKFPPSFQKVSATG 60
           MVKALPLHLGIVKSFPKFD SFDLPP PQL SARL  SGFNRLPLSRKFPP FQKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCR 120
           EKTSLLGAWTQDS LQFRDESPVSIELKSI SELEFDKAIADAE+RNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA-----LWKDGKKQDEVIGL 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA     LWKDGKKQDEV+GL
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAMPAIQLWKDGKKQDEVVGL 180

Query: 181 YKAYLVVNDVQKMIERELTGE 197
           YKAYLVVNDV+KMIERELT E
Sbjct: 181 YKAYLVVNDVRKMIERELTDE 201

[Close]

BLAST of Lsi04G000830 vs. NCBI nr
Match: XP_008446852.1 (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X8 [Cucumis melo] >TYK09259.1 thioredoxin-like 3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 366.3 bits (939), Expect = 1.6e-97
Identity = 184/202 (91.09%), Postives = 187/202 (92.57%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAVSGFNRLPLSRKFPPSFQKVSATG 60
           MVKALPLHLGIVKSFPKFD SFDLPP PQL SARL  SGFNRLPLSRKFPP FQKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCR 120
           EKTSLLGAWTQDS LQFRDESPVSIELKSI SELEFDKAIADAE+RNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA------LWKDGKKQDEVIG 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA      LWKDGKKQDEV+G
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAKMPAIQLWKDGKKQDEVVG 180

Query: 181 LYKAYLVVNDVQKMIERELTGE 197
           LYKAYLVVNDV+KMIERELT E
Sbjct: 181 LYKAYLVVNDVRKMIERELTDE 202

[Close]

BLAST of Lsi04G000830 vs. NCBI nr
Match: XP_008446851.1 (PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo])

HSP 1 Score: 364.8 bits (935), Expect = 4.8e-97
Identity = 184/206 (89.32%), Postives = 187/206 (90.78%), Query Frame = 0


Query: 1   MVKALPLHLGIVKSFPKFDGSFDLPPPPQLPSARLAVSGFNRLPLSRKFPPSFQKVSATG 60
           MVKALPLHLGIVKSFPKFD SFDLPP PQL SARL  SGFNRLPLSRKFPP FQKVSATG
Sbjct: 1   MVKALPLHLGIVKSFPKFDSSFDLPPSPQLLSARLPGSGFNRLPLSRKFPPIFQKVSATG 60

Query: 61  EKTSLLGAWTQDSTLQFRDESPVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCR 120
           EKTSLLGAWTQDS LQFRDESPVSIELKSI SELEFDKAIADAE+RNELVILVWMANWCR
Sbjct: 61  EKTSLLGAWTQDSALQFRDESPVSIELKSISSELEFDKAIADAEERNELVILVWMANWCR 120

Query: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA----------LWKDGKKQD 180
           NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLA          LWKDGKKQD
Sbjct: 121 NYIYLKPQLERLAADYYPRLQFYCIDVNMVPHKLVVRAGLAVGLEKMPAIQLWKDGKKQD 180

Query: 181 EVIGLYKAYLVVNDVQKMIERELTGE 197
           EV+GLYKAYLVVNDV+KMIERELT E
Sbjct: 181 EVVGLYKAYLVVNDVRKMIERELTDE 206

[Close]

BLAST of Lsi04G000830 vs. TAIR 10
Match: AT5G04260.1 (WCRKC thioredoxin 2 )

HSP 1 Score: 162.5 bits (410), Expect = 3.3e-40
Identity = 83/171 (48.54%), Postives = 114/171 (66.67%), Query Frame = 0


Query: 28  PQLPSARLAVSGFNRLPLSRKFPPSFQKVSATGEKTSLLGAWTQDSTLQFRDESPVSIEL 87
           P +P  R   S F+R P + K+     K+    E+   +    QD  LQ  D+SPVS+EL
Sbjct: 20  PLVPPYRQTSSSFSR-PRNFKYHSFTDKICLAAERIRAVDIQKQDGGLQELDDSPVSVEL 79

Query: 88  KSICSELEFDKAIADAEKRNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQFYCIDV 147
             IC E  FD+ + DA+K  E V++VWMA WCR  IYLKP+LE+LAA++YPRL+FY +DV
Sbjct: 80  GPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV 139

Query: 148 NMVPHKLVVRAG------LALWKDGKKQDEVIGLYKAYLVVNDVQKMIERE 193
           N VP++LV RAG      + LW+DG+KQ EVIG +KA+ VVN+V++MIE +
Sbjct: 140 NAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMIEND 189

[Close]

BLAST of Lsi04G000830 vs. TAIR 10
Match: AT5G06690.1 (WCRKC thioredoxin 1 )

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-22
Identity = 47/116 (40.52%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 82  PVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQ 141
           P ++E++ I +  E D  ++ A + ++ +I+ WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRAGLA------LWKDGKKQDEVIGLYKAYLVVNDVQKMIER 192
           FY +DVN VP  LV R  ++      LWK+ + ++EVIG +K +LV+ +V+++I +
Sbjct: 153 FYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELINK 208

[Close]

BLAST of Lsi04G000830 vs. TAIR 10
Match: AT5G06690.2 (WCRKC thioredoxin 1 )

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-15
Identity = 35/81 (43.21%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 82  PVSIELKSICSELEFDKAIADAEKRNELVILVWMANWCRNYIYLKPQLERLAADYYPRLQ 141
           P ++E++ I +  E D  ++ A + ++ +I+ WMA+WCR  IYLKP+LE+LAA+Y  R +
Sbjct: 93  PTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAK 152

Query: 142 FYCIDVNMVPHKLVVRAGLAL 163
           FY +DVN VP  LV R  +++
Sbjct: 153 FYYVDVNKVPQTLVKRGNISV 173

The following BLAST results are available for this feature:

BLAST of Lsi04G000830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT6	4.7e-39	48.54	Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC2 PE...	[more]
Q9FG36	4.4e-21	40.52	Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=WCRKC1 PE...	[more]
Q6Z7L3	1.2e-18	40.71	Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]

BLAST of Lsi04G000830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BGW0	6.1e-98	91.54	thioredoxin-like 3-2, chloroplastic isoform X9 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5D3CG32	7.9e-98	91.09	Thioredoxin-like 3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]
A0A1S3BGQ4	7.9e-98	91.09	thioredoxin-like 3-2, chloroplastic isoform X8 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A1S3BG27	2.3e-97	89.32	thioredoxin-like 3-2, chloroplastic isoform X7 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0KUX7	7.4e-96	89.60	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G622670...	[more]

BLAST of Lsi04G000830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891539.1	1.4e-101	94.55	thioredoxin-like 3-2, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_038891538.1	1.9e-101	94.09	thioredoxin-like 3-2, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_008446853.1	1.3e-97	91.54	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X9 [Cucumis melo]	[more]
XP_008446852.1	1.6e-97	91.09	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X8 [Cucumis melo] >TYK092...	[more]
XP_008446851.1	4.8e-97	89.32	PREDICTED: thioredoxin-like 3-2, chloroplastic isoform X7 [Cucumis melo]	[more]

BLAST of Lsi04G000830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04260.1	3.3e-40	48.54	WCRKC thioredoxin 2	[more]
AT5G06690.1	3.1e-22	40.52	WCRKC thioredoxin 1	[more]
AT5G06690.2	1.3e-15	43.21	WCRKC thioredoxin 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 84..190 e-value: 1.3E-8 score: 36.5
None	No IPR available	PANTHER	PTHR47192:SF4	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 35..193
None	No IPR available	CDD	cd02947	TRX_family	coord: 95..190 e-value: 1.20415E-8 score: 48.7085
IPR044253	Thioredoxin-like 3-1/3-2	PANTHER	PTHR47192	THIOREDOXIN-LIKE 3-2, CHLOROPLASTIC	coord: 35..193
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 88..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000830.1	Lsi04G000830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma